Lag0025622.1 (mRNA) Sponge gourd (AG‐4) v1

Overview


Name	Lag0025622.1
Type	mRNA
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Ulp1-like peptidase
Location	chr10: 16532316 .. 16533088 (-)
Sequence length	447
RNA-Seq Expression	Lag0025622.1
Synteny	Lag0025622.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATCCTCTTCCCGAAATCCCCCACGATCTGGATGCGTCATTCCAAAGATGGCTTGATAGTGAGAACCCAGAAGACAATGTTCGGATAACTGCATATGTCTGAGACAAGGCGTGGTTCTGTGACCTTTTTACTCCGTCGAAATGGATGACCAATGAGGTATGGTTTAATTACAAACAATCATTTTTCTTAATTGAAATACTAACACCGTAACTACATGTAGGCTATCGACTCAATCTTCATGTTCGTCCAGAAGAAATGGGGAGAACAACCAGAGTTATGTCGTAGGAAGGTCACCACTGGGGACCTGTGTGTAATGGTACGTACCACTGGAACAACTTAGTTCATATGTTTGTTTGATAGTGTTCGATAGGGTTTTTATTTTTTGTATCTTTTTATGATCATAATTTTTTAAGACGCGAAGATGGTCTATACAAAGAAATGAGTAGCGCCGTACATCCCCGAGACTTGACGTACGATTGAAGCAATGCAGGTAACGTCTTGAAGTACGGGATGGGCGAGCTTGCAGACCATAACATCCCATGGAGCACGGTTGATGCAGTGTACATGTCGTACAACATCAATGGGCTTCATTGGGTCCTCGTATGCATTGACTTGGAGGTGGGGGAGGTGGTCGTATCGGATTCCATGGTGGTGTTGAATAAGGACGGGGTGGTGGAGAAGGAGTTAAGGGTCCTTTGCCAAGTCCTGCCAGCTGTACTTTGGAAGATCAGTGTCATGAATGTGAGGAAGGATCTCACCGTTGAAAGATGA

mRNA sequence

ATGATCCTCTTCCCGAAATCCCCCACGATCTGGATGCGTCATTCCAAAGATGGCTTGATAGTGAGAACCCAGAAGACAATGCTATCGACTCAATCTTCATGTTCGTCCAGAAGAAATGGGGAGAACAACCAGAGTTATGTCGTAGGAAGGTCACCACTGGGGACCTGTAACGTCTTGAAGTACGGGATGGGCGAGCTTGCAGACCATAACATCCCATGGAGCACGGTTGATGCAGTGTACATGTCGTACAACATCAATGGGCTTCATTGGGTCCTCGTATGCATTGACTTGGAGGTGGGGGAGGTGGTCGTATCGGATTCCATGGTGGTGTTGAATAAGGACGGGGTGGTGGAGAAGGAGTTAAGGGTCCTTTGCCAAGTCCTGCCAGCTGTACTTTGGAAGATCAGTGTCATGAATGTGAGGAAGGATCTCACCGTTGAAAGATGA

Coding sequence (CDS)

ATGATCCTCTTCCCGAAATCCCCCACGATCTGGATGCGTCATTCCAAAGATGGCTTGATAGTGAGAACCCAGAAGACAATGCTATCGACTCAATCTTCATGTTCGTCCAGAAGAAATGGGGAGAACAACCAGAGTTATGTCGTAGGAAGGTCACCACTGGGGACCTGTAACGTCTTGAAGTACGGGATGGGCGAGCTTGCAGACCATAACATCCCATGGAGCACGGTTGATGCAGTGTACATGTCGTACAACATCAATGGGCTTCATTGGGTCCTCGTATGCATTGACTTGGAGGTGGGGGAGGTGGTCGTATCGGATTCCATGGTGGTGTTGAATAAGGACGGGGTGGTGGAGAAGGAGTTAAGGGTCCTTTGCCAAGTCCTGCCAGCTGTACTTTGGAAGATCAGTGTCATGAATGTGAGGAAGGATCTCACCGTTGAAAGATGA

Protein sequence

MILFPKSPTIWMRHSKDGLIVRTQKTMLSTQSSCSSRRNGENNQSYVVGRSPLGTCNVLKYGMGELADHNIPWSTVDAVYMSYNINGLHWVLVCIDLEVGEVVVSDSMVVLNKDGVVEKELRVLCQVLPAVLWKISVMNVRKDLTVER

Homology

[Close]

BLAST of Lag0025622.1 vs. NCBI nr
Match: XP_038885861.1 (sentrin-specific protease [Benincasa hispida])

HSP 1 Score: 86.3 bits (212), Expect = 2.5e-13
Identity = 38/84 (45.24%), Postives = 61/84 (72.62%), Query Frame = 0


Query: 55  TCNVLKYGMGELADHNIPWSTVDAVYMSYNINGLHWVLVCIDLEVGEVVVSDSMVVLNKD 114
           T NV+KY  G+  D+++PWS VDA+YM +N++ +HWVLVC+D +V E++V DS++VL+ +
Sbjct: 36  TTNVVKYVHGKHTDYDVPWSNVDAIYMPFNLSRMHWVLVCVDFQVRELIVFDSLIVLHLN 95

Query: 115 GVVEKELRVLCQVLPAVLWKISVM 139
             +E E+R LC+    +L   +VM
Sbjct: 96  ADLEHEMRSLCKNFLGLLIASAVM 119

[Close]

BLAST of Lag0025622.1 vs. NCBI nr
Match: XP_038882332.1 (uncharacterized protein LOC120073583 [Benincasa hispida])

HSP 1 Score: 84.7 bits (208), Expect = 7.2e-13
Identity = 37/81 (45.68%), Postives = 60/81 (74.07%), Query Frame = 0


Query: 58  VLKYGMGELADHNIPWSTVDAVYMSYNINGLHWVLVCIDLEVGEVVVSDSMVVLNKDGVV 117
           VLKY  G+  D+++PWS VDAVYM +N++G+HWVLVC D +V E+++ DS++ L+ +  +
Sbjct: 68  VLKYVHGKHTDYDVPWSNVDAVYMPFNLSGMHWVLVCADFQVRELIMFDSLIALHLNADL 127

Query: 118 EKELRVLCQVLPAVLWKISVM 139
           E E+R++C+  P +L   +VM
Sbjct: 128 ECEMRLVCKNFPGLLIVGAVM 148

[Close]

BLAST of Lag0025622.1 vs. NCBI nr
Match: XP_022148308.1 (uncharacterized protein LOC111016993 [Momordica charantia])

HSP 1 Score: 82.8 bits (203), Expect = 2.7e-12
Identity = 37/91 (40.66%), Postives = 60/91 (65.93%), Query Frame = 0


Query: 57  NVLKYGMGELADHNIPWSTVDAVYMSYNINGLHWVLVCIDLEVGEVVVSDSMVVLNKDGV 116
           +++ Y  G   D+ + W  VDA+Y+ +NI G HWV+VCIDLE GE+VV DS+  +  D  
Sbjct: 203 SIMGYTDGTHTDYPLRWMEVDAIYIPFNIRGKHWVMVCIDLEEGEIVVWDSLNSMTTDHA 262

Query: 117 VEKELRVLCQVLPAVLWKISVMNVRKDLTVE 148
           +E  L+V+  ++P +L+K  VM V+ +L ++
Sbjct: 263 MEDHLKVMHTIIPVMLFKCDVMKVQPNLPIQ 293

[Close]

BLAST of Lag0025622.1 vs. NCBI nr
Match: XP_022148137.1 (uncharacterized protein LOC111016890 [Momordica charantia])

HSP 1 Score: 77.0 bits (188), Expect = 1.5e-10
Identity = 36/89 (40.45%), Postives = 53/89 (59.55%), Query Frame = 0


Query: 58  VLKYGMGELADHNIPWSTVDAVYMSYNINGLHWVLVCIDLEVGEVVVSDSMVVLNKDGVV 117
           + +Y  G  +DHN+PWS  D VY   N+ G HWV++ IDL  G++ V DS+        +
Sbjct: 20  IWRYVHGRQSDHNVPWSDADIVYTPMNVGGNHWVMLGIDLVQGDITVWDSLQTATPLDEL 79

Query: 118 EKELRVLCQVLPAVLWKISVMNVRKDLTV 147
           EKEL+ +C +LP +L    + +VR DL V
Sbjct: 80  EKELKPMCTILPTLLHHGGIFSVRPDLPV 108

[Close]

BLAST of Lag0025622.1 vs. NCBI nr
Match: XP_022156568.1 (uncharacterized protein LOC111023442 [Momordica charantia])

HSP 1 Score: 72.0 bits (175), Expect = 4.8e-09
Identity = 32/78 (41.03%), Postives = 54/78 (69.23%), Query Frame = 0


Query: 67  ADHNIPWSTVDAVYMSYNINGLHWVLVCIDLEVGEVVVSDSMVVLNKDGVVEKELRVLCQ 126
           +D+ + W  V+AVY+ +N+NG HWV++CID   GE+VV DS+  +     +E++L+V+  
Sbjct: 9   SDYPLKWREVEAVYLPFNVNGNHWVMICIDFVEGEIVVWDSLRAITSYASLEEQLKVMHT 68

Query: 127 VLPAVLWKISVMNVRKDL 145
           V+P++L K  V+ VR +L
Sbjct: 69  VIPSLLHKSQVIAVRPNL 86

The following BLAST results are available for this feature:

BLAST of Lag0025622.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038885861.1	2.5e-13	45.24	sentrin-specific protease [Benincasa hispida]	[more]
XP_038882332.1	7.2e-13	45.68	uncharacterized protein LOC120073583 [Benincasa hispida]	[more]
XP_022148308.1	2.7e-12	40.66	uncharacterized protein LOC111016993 [Momordica charantia]	[more]
XP_022148137.1	1.5e-10	40.45	uncharacterized protein LOC111016890 [Momordica charantia]	[more]
XP_022156568.1	4.8e-09	41.03	uncharacterized protein LOC111023442 [Momordica charantia]	[more]

BLAST of Lag0025622.1 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.40.395.10	Adenoviral Proteinase; Chain A	coord: 13..146 e-value: 2.3E-6 score: 29.1
IPR003653	Ulp1 protease family, C-terminal catalytic domain	PFAM	PF02902	Peptidase_C48	coord: 75..131 e-value: 1.0E-7 score: 32.0
IPR038765	Papain-like cysteine peptidase superfamily	SUPERFAMILY	54001	Cysteine proteinases	coord: 63..128

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lag0025622	Lag0025622	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lag0025622.1.exon3	Lag0025622.1.exon3	exon
Lag0025622.1.exon2	Lag0025622.1.exon2	exon
Lag0025622.1.exon1	Lag0025622.1.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.Lag0025622.1	cds.Lag0025622.1_3	CDS
cds.Lag0025622.1	cds.Lag0025622.1_2	CDS
cds.Lag0025622.1	cds.Lag0025622.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lag0025622.1	Lag0025622.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006508	proteolysis
molecular_function	GO:0008234	cysteine-type peptidase activity