Lag0025603.1 (mRNA) Sponge gourd (AG‐4) v1

Overview


Name	Lag0025603.1
Type	mRNA
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Unknown protein
Location	chr10: 16028770 .. 16032679 (+)
Sequence length	792
RNA-Seq Expression	Lag0025603.1
Synteny	Lag0025603.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACAGCGGTAGGGAAGGGAGGGGAAACGAGGGAGAAAGAAAGGGAAAGAAATAAAGGGAGGATGGAGAAGCCGCCGTCCGTCGCCGTCGCGTCCATCGCCGGCAAGGGATGGGAGGGGGAAAGGCGAGGGAAAGAAGGGGAAAGGGAAAGAAGGGGGGGGGTTCGGGTGAGTGGGTGGGTGGGGAGAGAGAAAGAGTATTTTGTTTTTTGTTTTTTTTTTTAAGAATTTATTATTATTATTTTAATATATTATTATTTTAATTCAAAAATCAATATTTTAATATTTTAAAATATGACACGTCAGCACCGTTACTGCCACGTCATCACCGTTAAAAAAATTAACGGTCCAGGGACTCAATAGAAGCATTTTTTAAATAGTGGGGACTTGATTGTTCAATTTTCAAACTTAGGGACCTATTGGAAACGACCCTCAAACATGAGGGACCAAAAAGGTATTTTACCCTTATTTTTTTGTTGGGGGCAAAGTTTTGGATCTCTCTTTTCTCCAAACTCATTTCCACTCACCAACCTTGAAACAAACAATTCATCTCTTCTCTCTTTCATCTTAACCAACAAAATATATGATATTTTTGTTTTATGCCTTTTTCTTCCCACTTTTGATATGATATTTATCCGATTTTTAAATTAAAAAAAAAAGTTCAATGCAATTATTCATTTTGAATTTTACTTATTTTTGTCATAGTTGTAGTAACATTGACAGATTGAATGCATAACATTCAATTTCTTGAAACTTGATTGTGATGGACGATCAAACACCTCATTAGATAGATAAAGAAATGTTTTGATTACATTCTTTAATTTTTTTTGGGTGGAAACATTCTTTAAATTTAAATTGTACTTATTTGGTAAGTTTTTGATATTAACATTGATTAATGAAAAACACATACATCACTCTCAATTTCTTAAAATTTGAATGAGACATAGTGAATTCGACGAATAAGAAATTGATGAGTACGTAATTTTGATGGATTAAATTTTTGAGAAATTTGAGTTGATAGTAATTGCATTGGGTAGTTATTTGTCTAGTCAATAGTCTATATTTTCAAAATGTTATGGGCAAGAGATTATACCATTTTGAAACCTAGAGATAGAAAATAATTCTTTCTCAAATTTAAGCAACTAAAACGATATTTATTACTAATTTATTTAATTTTATTTAATAATTTATTCTTATTAAAAAAATTAAGACGTTTTTTTTTTAGTTTAATAACATGTGGGTAGAGAGATTCAAATATTTGACCACTTGGTCAAAGACAAAAATGTATTATTATAAAAAGAATTTAATAATTCATTAATTTGATACTATTAGCAAGAGCATATAACTCAACTGGCATGAAGTGTGTGCTCATGCCTCAGAGGTAATGGGTTCGAATTCCCCAACCTCTCATATTGTTGAATTCAAAAGAAAATAAATCATTAATTTGATACTAAAGTTTGGCAAAATTAAATACATTAAATCTAATCCATGTAAAAAGACTAATTAAAACCCCTCCTATCACGAAGGTGAAAACTTTCACCGATCAAATTTCAGCCATTGCCCCGTCTTCGTTTGGCATGGCTGTCAGTCATTGTAGTTGTTTTTTGAACACAGAGGCTCACTGTGTTGCGAGGTTGGTCGCGAATCTTCACTCTGATTTCGATCTTCTCCATGGGTGCTCTGTTTCGCAAGAGAAGGAACATTTTTTTTGGGCTCCTCATATTCCTTATTGGGTTTTCCCTCTCTTAGATGAGGGTAGGTGAAAACGGTTCTGATCTTTTAATGCAATTTATGTTTCAAAAAAAAAAAAAACCCTCCTATCACTAGTAGGAGTCTATGTGATATACTACAGTTGGAAGTGAAGTTTATCAGAGATAGGTTTCTATCACAAACATACTTTAATCATAATTGCAATTATTGTTGGTCTGGTGTTGTTATAATAGTCTATTACTAATAGACTTCTTTCAAGTTTGATATATTATTAGTAATAGCAGTTTATCACTAATAGTATAGAAAGAAAAATTACAGTCTCTATCAATGACGAACTTCAATATGTAACTGAATTAGCTTCCTAATTGATGATAAACTTCAATATCTGTTACCTCAACAACATCCTTCAATGTCTCACTTACACTCCCCCCCCCCCCGCCTTTTAGCATTCTTCAATATGTAATTGAAGTTATTCATGACTGATGATAGACCTTGATAACCATAATTTGAAATTACTGTCCAAAAAAAAAAGAGGAAAAAATCACACAACATATTAGTATAACAACAATAAGTTTCAATATAAGTCCATCATCATAGAGGAATGTAAGTTTATCAATGATTGTGAAAAAACATGAACATAATATTAGGTCAATGAAGGAGCAAAAAACGTAAGATTGATAATGGAGACAGACTATTAATATATGGATAGACTTCAATTAGTGATCCAAGTATATGTCACTGATAGACTTGGATTGTGAATGCAGTGATAAGACTCTATCCCTGATAAACTTTTATCACAGTTTACCAGTGATTGAAGTCTATCCCTGATAGACAAGAAGAATAAAATAGGAATAATGAAATCTTATTTTAAAATTTTTCCATAATTATGAATGTTTTTAAAATTGTTATAATTGCAAATAAAGATACCTAATTTGCTACACATTACAATTTCTCTCATAAAAGAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACATGTGAAGAAGGGAAGTTGAACCTCTAAACCTCTTAGTTGAGAGTACAAGCTATATCAGTTTTTTTTTTTTTTTTTAAAAAAAAACAAGTTATTCAGTTGAGCTATGTTTTGGTTGGTTTTTAGAAAAGACGTCGATATGCAAAGAGTTTCATTCATAATTTAATTCAATAATTTGCTATACCTTATGACTATGACCTAATAATCCTTTAAAGGGGAAAAAAATTATCTAGTGGCTTTTTTCATTGATAAGCACTAAAATTATTTCTTTATTTTATAATGAAACTTCGTCCGTATTTGCAATTCATCTTAATATAAGCTCCATATATCAAAATAAAGTATATTTATCTGAACATAAATTTCGTGAATTAAGTTGTGGCCACGTGGCAAAATAATTTTTAATGAATTGCAGTTCTCCTCTCTCTAAAAAAGAAAATATAACATAAAATAAATAATAATTTCGAAAAATAGTGATCTTTAATTATAGGAGATATAAGATTTGAGGTCACCCTTTTATGTTTAGTACAATTGTCTGAGCTGGAGGATTGAAATTTTAATCCCAAAAAAGGGCAATAGATAGGGGCAGATTTACGTCGGGGTCGGGGGCCCTGAAATTTTGAGTTTTTTATGTATACTAGTTTGAAACTACGTGCGTTGCACGTGTTATAATACCCTTTTAAGTATGAGTAGTGTTATAGGTGATTTTGGACCACACAAGGAGCTGACGAGGACAAACGGGCAGAGGTAGGACCAAAAGACCGACCCAGAGGAAGACCGGGCCAAAGGGTCGGGCCAACATGGCCCAACCCATATGGTCGGCCTCGGCCGACCATTCGACCTGGTTGCGCTGGCCGAGTCCGTTCGATGTCGTTTGGTCCCCACCGCCTTTGGCCGCCTTGGTTTCGCCTGGTTTGACCTAAAACGCCTCTGAATCCCTAAAAACCCTAGGAGGATGAGCAAGTATTTATATCCTTCTTCGCCACTGAAGAGGGGATCCCGAATTCTATCCCTAAACTCTACTCTCTATCCTCTGCTTTTTGCTCTTGCTCTTGCTTTTCCGCACCCTTCCGTTCTGTTTGCTGACTTAAGCATCGGAGTCGGTGTGGCGAGCACCACACCGGTGTGCAGGTTTACTGTCTTGCAGACCACGTCTTCCCCTTTCATCTACAAATTTACCGTTGGTGGCACGTGA

mRNA sequence

ATGACAGCGGTAGGGAAGGGAGGGGAAACGAGGGAGAAAGAAAGGGAAAGAAATAAAGGGAGGATGGAGAAGCCGCCGTCCGTCGCCGTCGCGTCCATCGCCGGCAAGGGATGGGAGGGGGAAAGGCGAGGGAAAGAAGGGGAAAGGGAAAGAAGGGGGGGGGTTCGGGTGAAAACTTTCACCGATCAAATTTCAGCCATTGCCCCGTCTTCGTTTGGCATGGCTGTCAGTCATTGTAGTTGTTTTTTGAACACAGAGGCTCACTGTGTTGCGAGGTTGGTCGCGAATCTTCACTCTGATTTCGATCTTCTCCATGGGTGCTCTGTTTCGCAAGAGAAGGAACATTTTTTTTGGGCTCCTCATATTCCTTATTGGGTTTTCCCTCTCTTAGATGAGGGAGCTGACGAGGACAAACGGGCAGAGGTAGGACCAAAAGACCGACCCAGAGGAAGACCGGGCCAAAGGGTCGGGCCAACATGGCCCAACCCATATGGTCGGCCTCGGCCGACCATTCGACCTGGTTGCGCTGGCCGAGTCCGTTCGATGTCGTTTGGTCCCCACCGCCTTTGGCCGCCTTGGTTTCGCCTGAGGGGATCCCGAATTCTATCCCTAAACTCTACTCTCTATCCTCTGCTTTTTGCTCTTGCTCTTGCTTTTCCGCACCCTTCCGTTCTGTTTGCTGACTTAAGCATCGGAGTCGGTGTGGCGAGCACCACACCGGTGTGCAGGTTTACTGTCTTGCAGACCACGTCTTCCCCTTTCATCTACAAATTTACCGTTGGTGGCACGTGA

Coding sequence (CDS)

ATGACAGCGGTAGGGAAGGGAGGGGAAACGAGGGAGAAAGAAAGGGAAAGAAATAAAGGGAGGATGGAGAAGCCGCCGTCCGTCGCCGTCGCGTCCATCGCCGGCAAGGGATGGGAGGGGGAAAGGCGAGGGAAAGAAGGGGAAAGGGAAAGAAGGGGGGGGGTTCGGGTGAAAACTTTCACCGATCAAATTTCAGCCATTGCCCCGTCTTCGTTTGGCATGGCTGTCAGTCATTGTAGTTGTTTTTTGAACACAGAGGCTCACTGTGTTGCGAGGTTGGTCGCGAATCTTCACTCTGATTTCGATCTTCTCCATGGGTGCTCTGTTTCGCAAGAGAAGGAACATTTTTTTTGGGCTCCTCATATTCCTTATTGGGTTTTCCCTCTCTTAGATGAGGGAGCTGACGAGGACAAACGGGCAGAGGTAGGACCAAAAGACCGACCCAGAGGAAGACCGGGCCAAAGGGTCGGGCCAACATGGCCCAACCCATATGGTCGGCCTCGGCCGACCATTCGACCTGGTTGCGCTGGCCGAGTCCGTTCGATGTCGTTTGGTCCCCACCGCCTTTGGCCGCCTTGGTTTCGCCTGAGGGGATCCCGAATTCTATCCCTAAACTCTACTCTCTATCCTCTGCTTTTTGCTCTTGCTCTTGCTTTTCCGCACCCTTCCGTTCTGTTTGCTGACTTAAGCATCGGAGTCGGTGTGGCGAGCACCACACCGGTGTGCAGGTTTACTGTCTTGCAGACCACGTCTTCCCCTTTCATCTACAAATTTACCGTTGGTGGCACGTGA

Protein sequence

MTAVGKGGETREKERERNKGRMEKPPSVAVASIAGKGWEGERRGKEGERERRGGVRVKTFTDQISAIAPSSFGMAVSHCSCFLNTEAHCVARLVANLHSDFDLLHGCSVSQEKEHFFWAPHIPYWVFPLLDEGADEDKRAEVGPKDRPRGRPGQRVGPTWPNPYGRPRPTIRPGCAGRVRSMSFGPHRLWPPWFRLRGSRILSLNSTLYPLLFALALAFPHPSVLFADLSIGVGVASTTPVCRFTVLQTTSSPFIYKFTVGGT

Homology

The following BLAST results are available for this feature:

BLAST of Lag0025603.1 vs.


Match Name	E-value	Identity	Description

BLAST of Lag0025603.1 vs.


Match Name	E-value	Identity	Description

BLAST of Lag0025603.1 vs.


Match Name	E-value	Identity	Description

BLAST of Lag0025603.1 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 137..170
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 38..54
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..54
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 7..23
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 137..152

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lag0025603	Lag0025603	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lag0025603.1.exon1	Lag0025603.1.exon1	exon
Lag0025603.1.exon2	Lag0025603.1.exon2	exon
Lag0025603.1.exon3	Lag0025603.1.exon3	exon
Lag0025603.1.exon4	Lag0025603.1.exon4	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.Lag0025603.1	cds.Lag0025603.1	CDS
cds.Lag0025603.1	cds.Lag0025603.1_2	CDS
cds.Lag0025603.1	cds.Lag0025603.1_3	CDS
cds.Lag0025603.1	cds.Lag0025603.1_4	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lag0025603.1	Lag0025603.1-protein	polypeptide