Lag0023293.1 (mRNA) Sponge gourd (AG‐4) v1

Overview
NameLag0023293.1
TypemRNA
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionCopper efflux ATPase
Locationchr7: 46929722 .. 46933972 (+)
Sequence length756
RNA-Seq ExpressionLag0023293.1
SyntenyLag0023293.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACCAAGGAGCAAAACCGGTAAGTGGGACGGGCCAAGACCGAAGGGGTCGGGTTTTTGGCCCAACCCCGTGCTCAGCCTCGGCCATGGGCCGAGGCCGACCCTCGGCCCGCTCGCGCGGGCCGAGCCAGTCTGGTGCCGTTAGGTCCCCACTGCTTCCATCTGCCCGGGGTTGCCTGGTTTGACCGAAAATGCCTCCGAAACCCTAAAAACGCTAGGAGGATGAACATGTATTTATACCCCACTTCACCACTGAAGAAGGGGGGATTCTATCCCTAAACGCTATTTTACATTCTCTACTCTCTCTCCTCTTGCTCTTACTTTTCCACTCCCTACCGTTCTGCTTGCTGACTTAAGCATCGGAGCCAGTGTGGCGAGCACCACACCGGTGCGCAGGTTTACTGTCTTGCAGGCCACGTCTTCCCCTTCATCTACAAATTACCGTTGGTGGCACGTGGAGGTCAGGTGAGTCCCTTGGCCAAATTTTGGCATCAACATTTGATATTTGATTTTCAAATTTTTTAGATAGCCCTCAAGCTTATGTTAGTACCTTCAAACCCAACATTTGATTCTCTATATACTCATCCTTAATGACTCTAGTGTCACACAACATCAACACAATACAAGGCCTCTAACCTTTTGACTTCAATGAACTACCAAGAACATGTTGGCATCATCAAGATTCTACTTTGAAGGACCCCAACAAAATTTAAAAGCAAATTATTGGAGGTAATTATGGAAAGGAGACCGCCACAATGTGACTGTACAATGTATGAAAGAGAAACTATGAAATTTTCAATAGACATAAAAAAATCTCGAATGTTTAGGGACCTATATTAGACACAAAATTAAAAGTTCAGGACTTATGTTTTTTTAAATTTAGGGACCTATTAAATACAAAATTGAAAGTTCTAGATACACTTTTGAAAGTTCAAAGACCTAATTGATATAATCCTAAAAGTTTAGAGACTAAACTTGTAATAAAACCAATTTTTTTTTATCTTATTCTCTAATATACAAGTATAATTAATAAAACTAAAATAAAAATTATATGTAACTTTCATAATTAAAGAGTAAAATTGTAATGAGATTGATACCATTTTCTCCCTTTTTCTAAGAAAACATAAGAGAAAATGTTCTTATTTTTTATGAATTAAAAATAGTTATTATTAAACATGTTTCATTTTATTTTTGTTTATGTTTTTTTCTTTTGAATTTAACAAGATTCGGGAGTGAAACTGAAAAACATTCAAACGTATGACCTTTTGAGCAAGGATACATGACCGCTAAACTGTAAAGTGCATGGTAATGTTCTTGTTTTCAGAAACCAACCCTCTTTATAGTACTCCTCACAATAGTGGTGGAATGGAAAAAAAAATGATCAAACCACTGGCCAAATTAAGAGAATTGAAGTAAAAAATGGTGGGTGTAGGCTCGATTTGGTCACAGTTTCATTTTAAGTTTTCTATTTTTGAAATTCATGTTTGTTCTTACTTATGGGTTTCTTTATTTTATTATTTACTTCCAAAAAATGTTTTCAAAATCCAAGTTTTGAAAACTAAAAAGTTTTATTTTTGGAATTTCACTAAAAAAACTCCTATTATTATACTTTGATCGACTTTAATCAAATTGCTCCTAAGTTAACCAAAAATTATTAGAAGAGGACACGACAATGTAACTGGTAATTTTACATCATTAGAGATGTGGATGTATTAAAGAGATTATAAAAATATTTTTAATCTATAGCTAATCCTTGGAAGGCATCATACAATATCTCACTATTATTAGGAGGTGACAATCACATTATGACATCTCCTTCAAATAATTTTTCGTAACTAAGTGTCCTTACACTGCCAAAACATGAGCTTAGCACAAAAAAATAATTAAAAAAGTAGTAGAAATTAGATTTAACTTTCATAATTAAAAAGTAAAATTATAATTGGACAATGCTATTGTATACTCTAATTTAAAAATAGGGATTATACATATTTTAGTTTTCTTTTTCTAAGAAAACATAACAGAAGCATGTCTTCATCGAAGGAACATGTCAATTACTGTTGAGCTAAGCTCGCTTTGGCAGTTTTTTTTTTTCTTTTCATGTTGGTTCTTAATTAAATACAACTTGTAACATTTCACATTCGAAGGATAACAAAAAAGTTGTAGCTCTTGAAAATATAAAGCGTTGAGGATATATATCATTTCCTTTCAATGCAGGGCCGTTCCAAATGGAATGAGGCTTGTGATACTTTTCAAAATGAAACCCTTATAATATTTTATAACAAAGACAAAATTGTAAAATATCAAAATTTATCGTATTATTACGATTGTTTCTTACAAAAAAAAAAAAAAAAAAACAAAATATATGAAACTAAGAAAATGTCACCAAGCAATTATACAACGGTGATATTTTATTTACAAAGTTACATCCACCGCCGAACTTTCTTTGAAGCAAAATCGTCAACCAATTCTTTATAGTCAACTCTCCTCAAAATATCATTATCAATCGCTATCAATGATTAAAATTGAATTTCTAAGATGATAACGGAGAAAATTAAAAGGTTTGATGTTTAATTTAGCTAGAATTGACAAAATGAGAAATTTGAAGAGTTTTGCTTGGTTGAAGAGGGGAGAAAAAGGAAGAGATAAGGAGTTATATATGAAGTGAGAAAAGTTTAGTTCACTTTGGTTTGTTCCCAAGGCATGCACACTAGTAAAGAGTTTTTTTTTTTTCTTTTTTTGGTTAAGCAACTTTTTCAATTTGGGGTTCTGTGATAGATCACAACCCACACATGTTAAATAACGACTCTGTCATGACTTTCATCCTAAATTTCTCATCATGACTTTCATCCTAGTTAAGGTTACATTTGAATTCCTAGCCAAATTTTAAAAACAAAAACGAGTTTTTGAAAACTACTTTTCTTTTGTTTCCAAAATTGGACTTGGTTTTTGAAAACAACGTAGAAGATTGATACTAAAACCAATAAACTTATAGGTGGAAGTATGTGTGTATAAACTTAATTTTTAAAATCTAAAAACAAAAAACTAAATGGTTATCAAATGGAGCAACAATCAAAATGCTACATATTCCAAACCTTAAGGACCAAAATGTAATTTTTTTCACGAGTTTGCCAATGGATGTGGACATGGAAACATGTGCCAAGAAAAAATAAAATTATCCTGTTTCAAAAAAAAAAAGAAACTCCAACAAGATCGAGAGTACTATTACTATTATATCACACTCTCAATCTGGATGTGGATCAAGGACTCCATGTGCAATTTTTTGTATTTTTGTGATAATTTACAATCATGCCCCTTCATCATTTATTGTGGTGAACATCTAACATCTTCTCTCACAAACTCACACACATGGTTCACTTTTGAGGAGAATAAATCAAGGTTAAAGTTAAAAGAGAATTTGTACTGGGTGTCAAATTGGACCAAATTAATAGTAAATATAGCTGTTGAAGGAGAAATTTTGACCAATCACGAATTGCCACGTCGTTACATAAACTTAATGACGAAATTAAAATTAATTAAATTTGGGACCAATTATAAATTGACATGTGTCCCAAATTTAATTTGAATACAAAGTTGGCCAATTATACATTTTTAGGGCCAAATGTCCATTTGATCAATTAATTAAAAATAAATTATTTTGATCCGATTAATTGATTTGACCAATTAATTAAAGAAAATAATTAATTGGATCAAATTTGGGTGTTTTAAATATTTGGGTCATATGGTTTTGGATCAAATATAAACCAGACCCAAGCCCAATAAAAGCCCAAGCCCAAGTTGTTAGGCCCAAAAGTCATCAGGGCCCATCCAGCGAGAACTCTATAAATAGAGGGGTTCTCCTCTATTTCAGGGGTTCAGAAATTCTACAATCTCACAAAGACAAGAGTTCAGAGTTTTCAAAGCTCTCAAGCAGAACCAGAGAATTCAGAGAGACTCCACCTAGTCTGAAGACCGAAGACTCTCTGCAATCCACAAGTCCAAGTGTTGAACACTTCTTGAAGACCAAACACTCTTCAAGACTTCAACACTCCTTGAAGACCAAACACTCTTCAAGACTTCAACACTCCTTGAAGACCAAACACTCTTCAAGACTTCAACACTCCTTGAAGACCAAACACTCTTCAAGACTTCAACACTCCTTGAAGATCAAAGACTCTTCAGGACATCAACACTTCTTGAAGACTGAAGACTCCTTCAAGACTAGAAGACTTCAAGCTCCAAGAATCCATTGA

mRNA sequence

ATGGACCAAGGAGCAAAACCGGTAAGTGGGACGGGCCAAGACCGAAGGGGTCGGGTTTTTGGCCCAACCCCGTGCTCAGCCTCGGCCATGGGCCGAGGCCGACCCTCGGCCCGCTCGCGCGGGCCGAGCCAGTCTGGTGCCGTTAGGTCCCCACTGCTTCCATCTGCCCGGGGTTGCCTGTGTGGCGAGCACCACACCGGTGCGCAGGTTTACTGTCTTGCAGGCCACGTCTTCCCCTTCATCTACAAATTACCGTTGGTGGCACGTGGAGACCCAAGCCCAATAAAAGCCCAAGCCCAAGTTGTTAGGCCCAAAAGTCATCAGGGCCCATCCAGCGAGAACTCTATAAATAGAGGGGTTCTCCTCTATTTCAGGGGTTCAGAAATTCTACAATCTCACAAAGACAAGAGTTCAGAGTTTTCAAAGCTCTCAAGCAGAACCAGAGAATTCAGAGAGACTCCACCTAGTCTGAAGACCGAAGACTCTCTGCAATCCACAAGTCCAAGTGTTGAACACTTCTTGAAGACCAAACACTCTTCAAGACTTCAACACTCCTTGAAGACCAAACACTCTTCAAGACTTCAACACTCCTTGAAGACCAAACACTCTTCAAGACTTCAACACTCCTTGAAGACCAAACACTCTTCAAGACTTCAACACTCCTTGAAGATCAAAGACTCTTCAGGACATCAACACTTCTTGAAGACTGAAGACTCCTTCAAGACTAGAAGACTTCAAGCTCCAAGAATCCATTGA

Coding sequence (CDS)

ATGGACCAAGGAGCAAAACCGGTAAGTGGGACGGGCCAAGACCGAAGGGGTCGGGTTTTTGGCCCAACCCCGTGCTCAGCCTCGGCCATGGGCCGAGGCCGACCCTCGGCCCGCTCGCGCGGGCCGAGCCAGTCTGGTGCCGTTAGGTCCCCACTGCTTCCATCTGCCCGGGGTTGCCTGTGTGGCGAGCACCACACCGGTGCGCAGGTTTACTGTCTTGCAGGCCACGTCTTCCCCTTCATCTACAAATTACCGTTGGTGGCACGTGGAGACCCAAGCCCAATAAAAGCCCAAGCCCAAGTTGTTAGGCCCAAAAGTCATCAGGGCCCATCCAGCGAGAACTCTATAAATAGAGGGGTTCTCCTCTATTTCAGGGGTTCAGAAATTCTACAATCTCACAAAGACAAGAGTTCAGAGTTTTCAAAGCTCTCAAGCAGAACCAGAGAATTCAGAGAGACTCCACCTAGTCTGAAGACCGAAGACTCTCTGCAATCCACAAGTCCAAGTGTTGAACACTTCTTGAAGACCAAACACTCTTCAAGACTTCAACACTCCTTGAAGACCAAACACTCTTCAAGACTTCAACACTCCTTGAAGACCAAACACTCTTCAAGACTTCAACACTCCTTGAAGACCAAACACTCTTCAAGACTTCAACACTCCTTGAAGATCAAAGACTCTTCAGGACATCAACACTTCTTGAAGACTGAAGACTCCTTCAAGACTAGAAGACTTCAAGCTCCAAGAATCCATTGA

Protein sequence

MDQGAKPVSGTGQDRRGRVFGPTPCSASAMGRGRPSARSRGPSQSGAVRSPLLPSARGCLCGEHHTGAQVYCLAGHVFPFIYKLPLVARGDPSPIKAQAQVVRPKSHQGPSSENSINRGVLLYFRGSEILQSHKDKSSEFSKLSSRTREFRETPPSLKTEDSLQSTSPSVEHFLKTKHSSRLQHSLKTKHSSRLQHSLKTKHSSRLQHSLKTKHSSRLQHSLKIKDSSGHQHFLKTEDSFKTRRLQAPRIH
Homology
[Close]
BLAST of Lag0023293.1 vs. NCBI nr
Match: WP_128129922.1 (multicopper oxidase domain-containing protein [Legionella sainthelensi] >VEB36060.1 copper efflux ATPase [Legionella sainthelensi])

HSP 1 Score: 58.5 bits (140), Expect = 9.3e-05
Identity = 32/87 (36.78%), Postives = 51/87 (58.62%), Query Frame = 0 

Query: 155 PSLKTEDSLQSTSPSVEHFLKTKHSSRLQHSLKTKHSSRLQHSLKTKHSSRLQHSLKTKH 214
           PS K +  L  +S +  H +K  HS ++ HS+K  HS ++ HS+K  HS ++ HS+K  H
Sbjct: 380 PSNKQKKHLLMSSKNPHHSMKMDHSMKMDHSMKMDHSMKMDHSMKMDHSMKMDHSMKMDH 439

Query: 215 SSRLQHSLKIKDSSGHQHFLKTEDSFK 242
           S ++ HS+K+  S    H +K + S K
Sbjct: 440 SMKMDHSMKMDHSMKMDHSMKMDHSMK 466

[Close]
BLAST of Lag0023293.1 vs. ExPASy TrEMBL
Match: A0A447SYR6 (Copper efflux ATPase OS=Legionella sainthelensi OX=28087 GN=copA_3 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 4.5e-05
Identity = 32/87 (36.78%), Postives = 51/87 (58.62%), Query Frame = 0 

Query: 155 PSLKTEDSLQSTSPSVEHFLKTKHSSRLQHSLKTKHSSRLQHSLKTKHSSRLQHSLKTKH 214
           PS K +  L  +S +  H +K  HS ++ HS+K  HS ++ HS+K  HS ++ HS+K  H
Sbjct: 380 PSNKQKKHLLMSSKNPHHSMKMDHSMKMDHSMKMDHSMKMDHSMKMDHSMKMDHSMKMDH 439

Query: 215 SSRLQHSLKIKDSSGHQHFLKTEDSFK 242
           S ++ HS+K+  S    H +K + S K
Sbjct: 440 SMKMDHSMKMDHSMKMDHSMKMDHSMK 466

The following BLAST results are available for this feature:
BLAST of Lag0023293.1 vs. NCBI nr
Match NameE-valueIdentityDescription
WP_128129922.19.3e-0536.78multicopper oxidase domain-containing protein [Legionella sainthelensi] >VEB3606... [more]
BLAST of Lag0023293.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Lag0023293.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A447SYR64.5e-0536.78Copper efflux ATPase OS=Legionella sainthelensi OX=28087 GN=copA_3 PE=4 SV=1[more]
BLAST of Lag0023293.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 219..245
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 179..218
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 135..251
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..49
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 135..156
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 157..173

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Lag0023293Lag0023293gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Lag0023293.1.exon1Lag0023293.1.exon1exon
Lag0023293.1.exon2Lag0023293.1.exon2exon
Lag0023293.1.exon3Lag0023293.1.exon3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
cds.Lag0023293.1cds.Lag0023293.1CDS
cds.Lag0023293.1cds.Lag0023293.1_2CDS
cds.Lag0023293.1cds.Lag0023293.1_3CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Lag0023293.1Lag0023293.1-proteinpolypeptide