Lag0023128.1 (mRNA) Sponge gourd (AG‐4) v1

Overview
NameLag0023128.1
TypemRNA
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionUnknown protein
Locationchr7: 44616320 .. 44617935 (-)
Sequence length243
RNA-Seq ExpressionLag0023128.1
SyntenyLag0023128.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCTGCGGCCCCAAGTCGGCAGTTTCCAAACAACCCACCAAAAAGGGGTCAGATCTCGGCCAGGATTCGTGACGATTTGGCCACCTCAGCAACCGCCGCAGCAACCTATGTCACCGCCGCACTCGCCGGATTCATCCCAGATCGTGCTCCGCCGCCGCCACCGCCGCCCGCAGCTGGTACCTAGACCTTCTTCAACCTTGAGCCCCAGTAATAAACACAGCTAGCTATTTGCTCTCATTGACCAACAATTTATCCTCCCACCTACTGTAATTAATTATCTGTAAATTATGAGTTTTAATTTCTTTTACTTTTTTTTTTGGTAATTTTCAGCTCAATATCTGTTTGTTGGTTCAGTGACCAAATCTCCCAGCTGCTGTATTTATATATGTAAATTAAAAAGTGTGTGCTTTATTTTACATTTTGATTTCTACTCTATTCTGGGTAATTCTAAGCTCATGAGCATGAAAATTTAATGAAAACATTATGTTAAAATGTGGGTAAAAGTTGAGTAATATTAAGATTATGGAACAATCTACAAATAATGTATAGTAAACTTGGAGAACAAATCAAAAATCTTTTACTGTTGTGTCACTCTCTCATACTTATTTGTGTTTGACTGGGATGACTGTTGTTTTGTTTATTTTTTGTGGTTTTTGAAGATAATATTGAATTGGGTGTGTGGAGGTAAAAGTGATATCAGTGTGATATCAAGTGGCCACTTAATTAGTTTGGAAAAGTATTGAAATTGACAACAGGTTTAATATATATATGTTTGTCATTCAACTTTGGAGGGCTAGGGTTATGAACAATCCAAATTTCTCCTTTGACAAATGTCTTCTTCTCATTTTTGTTTCCCCAATTGGATTTGGCCACATGGGATAATTTGTGCACATGTTGGTAACCTTATGTGTGTATTGATATAAGAGGGTTTTAACTTTTACTTTGAGAGATTAAATGTGAGGGTTTTTCTTTGATCTAAGAAGAGAGAAACTTGAGAAAACGGTAATTGACATGTATCTTCAATCAAGAGGTCAGAGGTTCCCACCTCCAAATGTTGTTGAACTCAAAAAAGAAACTTGTTTACTTATCATTGAGGTGTTAAAAAATTTGGGTAACAAATTCCTACTTCTAAAAGTTTTTATATAAATAACTCTCTTTACCACATCCTCAATACTATTTTAAGAGCAACGGACCAAAAGATGAGTGTTTATTATTCTTTTTTGGAACTTTAAACTCAATTTTATTGTGCAAAGTGATATGAGCTATATATATATATATGTTGAATCTTCCCATAAAGATAGCGAGATGCCCCCACCTAATTAATTATTGGCGTCGTTTTGTTTATCAATGGTTTCTTGTATTTACTTTGGGTGTGTTTGGGGCAAGGGTTTGGGTTTTGGAAGTTGGGGTTTAGGAAATAGGGTGTTTTTTGAAATCTGTGGGTTTAGGAAGTCTGTGTTTGGGGTGCTGGTTTCTGAAGTCTGATTTAGGAAGTCTGTGTTTGGGGTGTTGGTTTCTGAAGTTTGATTTAGGAAGTCTGTGTTTGGGGTGCTGGTTTCTGAAATCTGATTTAGGAAGTCTGTGTTTGGGGCGGTGGTTTCTGAAGTCTGA

mRNA sequence

ATGGCTTCTGCGGCCCCAAGTCGGCAGTTTCCAAACAACCCACCAAAAAGGGGTCAGATCTCGGCCAGGATTCGTGACGATTTGGCCACCTCAGCAACCGCCGCAGCAACCTATGTCACCGCCGCACTCGCCGGATTCATCCCAGATCGTGCTCCGCCGCCGCCACCGCCGCCCGCAGCTGATAATATTGAATTGGGTGTGTGGAGGAAGTCTGTGTTTGGGGCGGTGGTTTCTGAAGTCTGA

Coding sequence (CDS)

ATGGCTTCTGCGGCCCCAAGTCGGCAGTTTCCAAACAACCCACCAAAAAGGGGTCAGATCTCGGCCAGGATTCGTGACGATTTGGCCACCTCAGCAACCGCCGCAGCAACCTATGTCACCGCCGCACTCGCCGGATTCATCCCAGATCGTGCTCCGCCGCCGCCACCGCCGCCCGCAGCTGATAATATTGAATTGGGTGTGTGGAGGAAGTCTGTGTTTGGGGCGGTGGTTTCTGAAGTCTGA

Protein sequence

MASAAPSRQFPNNPPKRGQISARIRDDLATSATAAATYVTAALAGFIPDRAPPPPPPPAADNIELGVWRKSVFGAVVSEV
Homology
[Close]
BLAST of Lag0023128.1 vs. NCBI nr
Match: KGN65654.1 (hypothetical protein Csa_019816 [Cucumis sativus])

HSP 1 Score: 67.8 bits (164), Expect = 4.9e-08
Identity = 36/53 (67.92%), Postives = 41/53 (77.36%), Query Frame = 0 

Query: 12 NNPPKRGQISARIRDDLATSATAAATYVTAALAGFIPD-----RAPPPPPPPA 60
          NNPP+RG+I A+I +DLATSA  AA+YV AALAG IPD      APPPPPPPA
Sbjct: 7  NNPPRRGRIMAKIGEDLATSAATAASYVVAALAGLIPDPPPPVHAPPPPPPPA 59

[Close]
BLAST of Lag0023128.1 vs. NCBI nr
Match: TYK02876.1 (hypothetical protein E5676_scaffold968G00050 [Cucumis melo var. makuwa])

HSP 1 Score: 63.9 bits (154), Expect = 7.1e-07
Identity = 33/47 (70.21%), Postives = 37/47 (78.72%), Query Frame = 0 

Query: 12 NNPPKRGQISARIRDDLATSATAAATYVTAALAGFIPDRAPPPPPPP 59
          NNPPKRG+I A+I +DLATSA  AA+YV AALAG IPDR PP   PP
Sbjct: 7  NNPPKRGKIKAKIGEDLATSAATAASYVVAALAGLIPDRPPPNHGPP 53

The following BLAST results are available for this feature:
BLAST of Lag0023128.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN65654.14.9e-0867.92hypothetical protein Csa_019816 [Cucumis sativus][more]
TYK02876.17.1e-0770.21hypothetical protein E5676_scaffold968G00050 [Cucumis melo var. makuwa][more]
BLAST of Lag0023128.1 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Lag0023128Lag0023128gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Lag0023128.1.exon3Lag0023128.1.exon3exon
Lag0023128.1.exon2Lag0023128.1.exon2exon
Lag0023128.1.exon1Lag0023128.1.exon1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
cds.Lag0023128.1cds.Lag0023128.1_3CDS
cds.Lag0023128.1cds.Lag0023128.1_2CDS
cds.Lag0023128.1cds.Lag0023128.1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Lag0023128.1Lag0023128.1-proteinpolypeptide