Lag0023105.1 (mRNA) Sponge gourd (AG‐4) v1

Overview


Name	Lag0023105.1
Type	mRNA
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	proline-rich receptor-like protein kinase PERK10
Location	chr7: 44294795 .. 44295301 (-)
Sequence length	507
RNA-Seq Expression	Lag0023105.1
Synteny	Lag0023105.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCAAGTTCGCATCCATTTGTTGTGCAGTTCTTTCGGCTCTGCTTTTGGTGCATTTCGCTGTTTCTGTGGATTCTCCAGCGGAATCCCCCGCTCCGCCGCCGCAGACCGGCGCGGATTCACCTCCGCCGCGCTCTCCATCTCCCATCTCCAGTCCACCAGACGCATCGCCTCGGAATGCACCGCTAAGTTCTCCTCCATCGCCTCCACCAACAGATCCTGCTCCTGGTTCATCTCCTTCTCGATCTCCTACTCCCTCCTCTCCTCCCGCTCCATCTCCACCGCCATCGGAACCTAGCGACTTTAGCCGGAGTAATGTGAGCAAAGAAGACGAATCGGATGGAGAATCAAAGGACGGGATGAGTGGAGCTCAGAAATTCGGAATCGCAATAGGAGTGATCGCGGCGGTTGCTTTGGTTGGATTTGGAGGATTGGTGTACAAGAAGCGCCAAGACAATATTCGCCGATCTCGCTATGGATATACAGCGAGGAGAGAGATTCTTTGA

mRNA sequence

ATGGCCAAGTTCGCATCCATTTGTTGTGCAGTTCTTTCGGCTCTGCTTTTGGTGCATTTCGCTGTTTCTGTGGATTCTCCAGCGGAATCCCCCGCTCCGCCGCCGCAGACCGGCGCGGATTCACCTCCGCCGCGCTCTCCATCTCCCATCTCCAGTCCACCAGACGCATCGCCTCGGAATGCACCGCTAAGTTCTCCTCCATCGCCTCCACCAACAGATCCTGCTCCTGGTTCATCTCCTTCTCGATCTCCTACTCCCTCCTCTCCTCCCGCTCCATCTCCACCGCCATCGGAACCTAGCGACTTTAGCCGGAGTAATGTGAGCAAAGAAGACGAATCGGATGGAGAATCAAAGGACGGGATGAGTGGAGCTCAGAAATTCGGAATCGCAATAGGAGTGATCGCGGCGGTTGCTTTGGTTGGATTTGGAGGATTGGTGTACAAGAAGCGCCAAGACAATATTCGCCGATCTCGCTATGGATATACAGCGAGGAGAGAGATTCTTTGA

Coding sequence (CDS)

ATGGCCAAGTTCGCATCCATTTGTTGTGCAGTTCTTTCGGCTCTGCTTTTGGTGCATTTCGCTGTTTCTGTGGATTCTCCAGCGGAATCCCCCGCTCCGCCGCCGCAGACCGGCGCGGATTCACCTCCGCCGCGCTCTCCATCTCCCATCTCCAGTCCACCAGACGCATCGCCTCGGAATGCACCGCTAAGTTCTCCTCCATCGCCTCCACCAACAGATCCTGCTCCTGGTTCATCTCCTTCTCGATCTCCTACTCCCTCCTCTCCTCCCGCTCCATCTCCACCGCCATCGGAACCTAGCGACTTTAGCCGGAGTAATGTGAGCAAAGAAGACGAATCGGATGGAGAATCAAAGGACGGGATGAGTGGAGCTCAGAAATTCGGAATCGCAATAGGAGTGATCGCGGCGGTTGCTTTGGTTGGATTTGGAGGATTGGTGTACAAGAAGCGCCAAGACAATATTCGCCGATCTCGCTATGGATATACAGCGAGGAGAGAGATTCTTTGA

Protein sequence

MAKFASICCAVLSALLLVHFAVSVDSPAESPAPPPQTGADSPPPRSPSPISSPPDASPRNAPLSSPPSPPPTDPAPGSSPSRSPTPSSPPAPSPPPSEPSDFSRSNVSKEDESDGESKDGMSGAQKFGIAIGVIAAVALVGFGGLVYKKRQDNIRRSRYGYTARREIL

Homology

[Close]

BLAST of Lag0023105.1 vs. NCBI nr
Match: XP_023523185.1 (lysine-rich arabinogalactan protein 19-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 239.6 bits (610), Expect = 2.0e-59
Identity = 145/168 (86.31%), Postives = 151/168 (89.88%), Query Frame = 0


Query: 1   MAKFASICCAVLSALLLVHFAVSVDSPAESPAPPPQTGADSPPPRSPSPISSPPDASPRN 60
           MAKFASICCAVLSALLL  F VS DS AESPAPPPQTGADSP  RSPS ISSPPDASPRN
Sbjct: 1   MAKFASICCAVLSALLLAQFTVSSDSMAESPAPPPQTGADSPSSRSPS-ISSPPDASPRN 60

Query: 61  APLSSPPSPPPTDPAPGSSPSRSPTPSSPPAPSPPPSEPSDFSRSNVSKEDESDGESKDG 120
           AP+SSPPSPPP+D  PGSSP+RSP PSS  APSPPPSEPSDF+RSNVSKEDESDGESKDG
Sbjct: 61  APVSSPPSPPPSDLTPGSSPTRSPPPSSSLAPSPPPSEPSDFNRSNVSKEDESDGESKDG 120

Query: 121 MSGAQKFGIAIGVIAAVALVGFGGLVYKKRQDNIRRSRYGYTARREIL 169
           MSGAQKFGIA+GVIAA  LVGFGGL+YKKRQ NIRRS YGYTARREIL
Sbjct: 121 MSGAQKFGIAVGVIAAAGLVGFGGLIYKKRQANIRRSGYGYTARREIL 167

[Close]

BLAST of Lag0023105.1 vs. NCBI nr
Match: KAG6583481.1 (hypothetical protein SDJN03_19413, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 230.3 bits (586), Expect = 1.2e-56
Identity = 139/170 (81.76%), Postives = 149/170 (87.65%), Query Frame = 0


Query: 1   MAKFASICCAVLSALLLVHFAVSVDSPAESPAPPPQTGADSPPPRSPSPISSPPDASPRN 60
           MAK  SICCAVLS LLL  F+VSVDSPAESPAPPPQTGADSPPPRSPS ISSPP  SPRN
Sbjct: 1   MAKVTSICCAVLSVLLLAQFSVSVDSPAESPAPPPQTGADSPPPRSPSRISSPPAPSPRN 60

Query: 61  APLSSPPSPPPTDPAPGSSPSRSPTPSSPP--APSPPPSEPSDFSRSNVSKEDESDGESK 120
           AP+SSPP+PPP+D  PGSSP+  P P  PP  +PSPPPSE SD SR+NVSK DESD ESK
Sbjct: 61  APVSSPPAPPPSDLPPGSSPTPPPPPPPPPSSSPSPPPSEASDISRNNVSKNDESDEESK 120

Query: 121 DGMSGAQKFGIAIGVIAAVALVGFGGLVYKKRQDNIRRSRYGYTARREIL 169
           +GMSGAQKFGIAIGVIAAVAL+GFGGLVYKKRQDNIRRSRYGYTARRE+L
Sbjct: 121 NGMSGAQKFGIAIGVIAAVALIGFGGLVYKKRQDNIRRSRYGYTARRELL 170

[Close]

BLAST of Lag0023105.1 vs. NCBI nr
Match: XP_022998944.1 (proline-rich receptor-like protein kinase PERK10 [Cucurbita maxima])

HSP 1 Score: 230.3 bits (586), Expect = 1.2e-56
Identity = 143/168 (85.12%), Postives = 149/168 (88.69%), Query Frame = 0


Query: 1   MAKFASICCAVLSALLLVHFAVSVDSPAESPAPPPQTGADSPPPRSPSPISSPPDASPRN 60
           MAKFASICCAVLSALLL  F VS DS AESPAPPPQTGADSP  RSPS ISSP  ASPRN
Sbjct: 1   MAKFASICCAVLSALLLAQFTVSSDSMAESPAPPPQTGADSPSSRSPS-ISSPSYASPRN 60

Query: 61  APLSSPPSPPPTDPAPGSSPSRSPTPSSPPAPSPPPSEPSDFSRSNVSKEDESDGESKDG 120
           AP+SSPPSPPP+D APGSSP+RSP PSS  A SPPPSEPSDF+RSNVSKEDESDGESKDG
Sbjct: 61  APVSSPPSPPPSDLAPGSSPTRSPPPSSSLAFSPPPSEPSDFNRSNVSKEDESDGESKDG 120

Query: 121 MSGAQKFGIAIGVIAAVALVGFGGLVYKKRQDNIRRSRYGYTARREIL 169
           MSGAQKFGIA+GVIAA  LVGFGGL+YKKRQ NIRRS YGYTARREIL
Sbjct: 121 MSGAQKFGIAVGVIAAAGLVGFGGLIYKKRQANIRRSGYGYTARREIL 167

[Close]

BLAST of Lag0023105.1 vs. NCBI nr
Match: XP_022970448.1 (lysine-rich arabinogalactan protein 19-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 229.9 bits (585), Expect = 1.6e-56
Identity = 139/168 (82.74%), Postives = 149/168 (88.69%), Query Frame = 0


Query: 1   MAKFASICCAVLSALLLVHFAVSVDSPAESPAPPPQTGADSPPPRSPSPISSPPDASPRN 60
           MAK  SICCAVLS LLL  F+VSVDSPAESPAPPPQTGADSPPPRSPS ISSPP  SPRN
Sbjct: 1   MAKVTSICCAVLSVLLLAQFSVSVDSPAESPAPPPQTGADSPPPRSPSRISSPPAPSPRN 60

Query: 61  APLSSPPSPPPTDPAPGSSPSRSPTPSSPPAPSPPPSEPSDFSRSNVSKEDESDGESKDG 120
           AP+SSPP+PPP+D APGSSP+  P PSS  +PSP PSE SD SR+NVSK DESD ESK+G
Sbjct: 61  APVSSPPAPPPSDLAPGSSPTPPPPPSS--SPSPSPSEASDISRNNVSKNDESDEESKNG 120

Query: 121 MSGAQKFGIAIGVIAAVALVGFGGLVYKKRQDNIRRSRYGYTARREIL 169
           MSGAQKFGIAIGVIAAVAL+GFGGLVYKKRQDNIRRSRYGYTARRE+L
Sbjct: 121 MSGAQKFGIAIGVIAAVALIGFGGLVYKKRQDNIRRSRYGYTARRELL 166

[Close]

BLAST of Lag0023105.1 vs. NCBI nr
Match: XP_022948339.1 (proline-rich receptor-like protein kinase PERK10 [Cucurbita moschata] >KAG6607191.1 hypothetical protein SDJN03_00533, partial [Cucurbita argyrosperma subsp. sororia] >KAG7036880.1 hypothetical protein SDJN02_00500, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 229.9 bits (585), Expect = 1.6e-56
Identity = 143/168 (85.12%), Postives = 149/168 (88.69%), Query Frame = 0


Query: 1   MAKFASICCAVLSALLLVHFAVSVDSPAESPAPPPQTGADSPPPRSPSPISSPPDASPRN 60
           MAKFASICCAVLSALLL  F VS DS AESPAPPPQTGADSP  RSPS ISSPPDASPRN
Sbjct: 1   MAKFASICCAVLSALLLAQFTVSSDSIAESPAPPPQTGADSPSSRSPS-ISSPPDASPRN 60

Query: 61  APLSSPPSPPPTDPAPGSSPSRSPTPSSPPAPSPPPSEPSDFSRSNVSKEDESDGESKDG 120
           AP+SS PSP P+D APGSSP+RS  PSS  APSPPPSEPSDF+RSNVSKEDESDGESKDG
Sbjct: 61  APVSSAPSPLPSDLAPGSSPTRSLPPSSSLAPSPPPSEPSDFNRSNVSKEDESDGESKDG 120

Query: 121 MSGAQKFGIAIGVIAAVALVGFGGLVYKKRQDNIRRSRYGYTARREIL 169
           MSGAQKFGIA+GVIAA  LVGFGGL+YKKRQ NIRRS YGYTARREIL
Sbjct: 121 MSGAQKFGIAVGVIAAAGLVGFGGLIYKKRQANIRRSGYGYTARREIL 167

The following BLAST results are available for this feature:

BLAST of Lag0023105.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023523185.1	2.0e-59	86.31	lysine-rich arabinogalactan protein 19-like [Cucurbita pepo subsp. pepo]	[more]
KAG6583481.1	1.2e-56	81.76	hypothetical protein SDJN03_19413, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022998944.1	1.2e-56	85.12	proline-rich receptor-like protein kinase PERK10 [Cucurbita maxima]	[more]
XP_022970448.1	1.6e-56	82.74	lysine-rich arabinogalactan protein 19-like isoform X1 [Cucurbita maxima]	[more]
XP_022948339.1	1.6e-56	85.12	proline-rich receptor-like protein kinase PERK10 [Cucurbita moschata] >KAG660719...	[more]

BLAST of Lag0023105.1 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 28..99
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 25..121
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 104..119
None	No IPR available	PANTHER	PTHR36721:SF5	PROTEIN, PUTATIVE-RELATED	coord: 1..168
None	No IPR available	PANTHER	PTHR36721	PROLINE-RICH FAMILY PROTEIN	coord: 1..168

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lag0023105	Lag0023105	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lag0023105.1.exon1	Lag0023105.1.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.Lag0023105.1	cds.Lag0023105.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lag0023105.1	Lag0023105.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane