Lag0019897.1 (mRNA) Sponge gourd (AG‐4) v1

Overview
NameLag0019897.1
TypemRNA
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionUnknown protein
Locationchr5: 46530517 .. 46531029 (-)
Sequence length246
RNA-Seq ExpressionLag0019897.1
SyntenyLag0019897.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCATCCCCCAAGATTTCCCTTGTATTGAAGCTTCTTTTCTTTGCTTCCCTTCTCATTGTCTCAAATGTTTCTGCAACCTATGACTCTACTTCGCTCCACAAACCTCGTATTCGTAAGTTGTCTTTTCCATTATTTTCTGCAATGTTAGCTTTTCTTACTGTAGATGCCCACTTTTTTTTCAGACATTTTTTTAAAGAAAGTTACAATGGCATTTTTAAGTAATGAAATCTCATTAATTATATGTTGAATGTAGCCCTAATTTAGGAAATCTATATTGGAGAAGCAAGACATGAATCAGTGCTTCTCTTCAAAGAAATGATAACCAAGTTAATTTTAGTAAGAATGTTGGTTTCATTTTGAATTCTTTGTAAGGTTTCAGGTAAAATGGCTATGGAGTACAAAAATGTTGAGAAGGCTGTGGTTGTAGCAAAAGCAAAGAAACCAACTTCTGATGATGATGTCCCATGGGGGGGAGGTTATTTTCCTCCAATATTAAACAACAACCCTTGA

mRNA sequence

ATGGCATCCCCCAAGATTTCCCTTGTATTGAAGCTTCTTTTCTTTGCTTCCCTTCTCATTGTCTCAAATGTTTCTGCAACCTATGACTCTACTTCGCTCCACAAACCTCGTATTCGTAAAATGGCTATGGAGTACAAAAATGTTGAGAAGGCTGTGGTTGTAGCAAAAGCAAAGAAACCAACTTCTGATGATGATGTCCCATGGGGGGGAGGTTATTTTCCTCCAATATTAAACAACAACCCTTGA

Coding sequence (CDS)

ATGGCATCCCCCAAGATTTCCCTTGTATTGAAGCTTCTTTTCTTTGCTTCCCTTCTCATTGTCTCAAATGTTTCTGCAACCTATGACTCTACTTCGCTCCACAAACCTCGTATTCGTAAAATGGCTATGGAGTACAAAAATGTTGAGAAGGCTGTGGTTGTAGCAAAAGCAAAGAAACCAACTTCTGATGATGATGTCCCATGGGGGGGAGGTTATTTTCCTCCAATATTAAACAACAACCCTTGA

Protein sequence

MASPKISLVLKLLFFASLLIVSNVSATYDSTSLHKPRIRKMAMEYKNVEKAVVVAKAKKPTSDDDVPWGGGYFPPILNNNP
Homology
BLAST of Lag0019897.1 vs. NCBI nr
Match: KAA0067663.1 (hypothetical protein E6C27_scaffold70G00320 [Cucumis melo var. makuwa] >TYK23667.1 hypothetical protein E5676_scaffold577G00330 [Cucumis melo var. makuwa])

HSP 1 Score: 89.0 bits (219), Expect = 2.1e-14
Identity = 52/79 (65.82%), Postives = 61/79 (77.22%), Query Frame = 0

Query: 5  KISLVLKLLFFASLLIVSN--VSATYDSTSLHKPRIRKMAMEYKNVEKAVVVAKAKKPTS 64
          KISL+LKLLFFA+LL +++  VSAT +   LHKP IRKM +EYK  EKAVVV K  +PTS
Sbjct: 7  KISLMLKLLFFANLLFIASTTVSATNNIPLLHKPPIRKMGVEYKKGEKAVVVPKVNRPTS 66

Query: 65 DDDVPWGGGYF--PPILNN 80
           DDVPWGGGY   PPILN+
Sbjct: 67 -DDVPWGGGYVHRPPILNS 84

BLAST of Lag0019897.1 vs. NCBI nr
Match: KAG7014832.1 (hypothetical protein SDJN02_22461 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 84.0 bits (206), Expect = 6.7e-13
Identity = 49/84 (58.33%), Postives = 57/84 (67.86%), Query Frame = 0

Query: 1  MASP---KISLVLKLLFFASLLIVSNVSATYDSTSLHKPRIRKMAMEYKNVEKAVVVAKA 60
          MASP   +ISL+L+LLFFA LL+ S  SA      LH PR  KMAMEY  V K      +
Sbjct: 1  MASPRRIRISLLLRLLFFALLLVASTASAANSKALLHNPRTPKMAMEYGQVGKGT----S 60

Query: 61 KKPTSDDDVPWGGGYFPPILNNNP 82
          KKPT+ DDVPWGGGY PPIL+N+P
Sbjct: 61 KKPTA-DDVPWGGGYVPPILSNHP 79

BLAST of Lag0019897.1 vs. NCBI nr
Match: KAE8650427.1 (hypothetical protein Csa_010020 [Cucumis sativus])

HSP 1 Score: 83.2 bits (204), Expect = 1.1e-12
Identity = 50/79 (63.29%), Postives = 58/79 (73.42%), Query Frame = 0

Query: 5  KISLVLKLLFFASLLIV--SNVSATYDSTSLHKPRIRKMAMEYKNVEKAVVVAKAKKPTS 64
          KISL+LKLLFFA+LL +  + +SAT +   LHKP IRKMA+ Y+  EKAVVV K  KPTS
Sbjct: 11 KISLMLKLLFFATLLFIAYTTISATNNIPLLHKPPIRKMAVGYRKGEKAVVVPKVYKPTS 70

Query: 65 DDDVPWGGGYF--PPILNN 80
            D PWGGGY   PPILNN
Sbjct: 71 -ADFPWGGGYVRRPPILNN 88

BLAST of Lag0019897.1 vs. NCBI nr
Match: XP_022141390.1 (uncharacterized protein LOC111011803 [Momordica charantia])

HSP 1 Score: 73.9 bits (180), Expect = 6.9e-10
Identity = 49/82 (59.76%), Postives = 58/82 (70.73%), Query Frame = 0

Query: 1   MASPKISLVLKLLFFASLLIVSNVSATYDSTSLHK-PRIRKMAMEYKNVEKAVVVAKAKK 60
           MAS +IS VLKL FFA LLI S VSA+  + S+HK PRIRK+ MEY++V KAV+ AKA  
Sbjct: 42  MASLRISFVLKLFFFALLLIASRVSAS--TPSIHKRPRIRKLGMEYRSVGKAVLRAKA-- 101

Query: 61  PTSDDDVPWGGGYFPPILNNNP 82
             +  D PW GGY PP  NNNP
Sbjct: 102 --ASYDFPWKGGYNPP--NNNP 115

BLAST of Lag0019897.1 vs. NCBI nr
Match: KAE8650426.1 (hypothetical protein Csa_009889 [Cucumis sativus])

HSP 1 Score: 68.9 bits (167), Expect = 2.2e-08
Identity = 46/83 (55.42%), Postives = 56/83 (67.47%), Query Frame = 0

Query: 1  MASP-KISLVLKLLFFASLLIVSNVSATYDSTS--LHKPRIRKMAMEYK-NVEKAVVVAK 60
          MASP +I L+LKLLFF+ LLI S VS T +      HKPRIRK+ ++ K N  KA VV +
Sbjct: 5  MASPWRIPLLLKLLFFSLLLIFSTVSTTNNVVQPLFHKPRIRKIGVDKKTNDGKAGVVPR 64

Query: 61 AKKPTSDDDVPWGGGYFPPILNN 80
            KPTS +D PWGGGY  P L+N
Sbjct: 65 VIKPTS-EDFPWGGGYIHPHLSN 86

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0067663.12.1e-1465.82hypothetical protein E6C27_scaffold70G00320 [Cucumis melo var. makuwa] >TYK23667... [more]
KAG7014832.16.7e-1358.33hypothetical protein SDJN02_22461 [Cucurbita argyrosperma subsp. argyrosperma][more]
KAE8650427.11.1e-1263.29hypothetical protein Csa_010020 [Cucumis sativus][more]
XP_022141390.16.9e-1059.76uncharacterized protein LOC111011803 [Momordica charantia][more]
KAE8650426.12.2e-0855.42hypothetical protein Csa_009889 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Lag0019897Lag0019897gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Lag0019897.1.exon2Lag0019897.1.exon2exon
Lag0019897.1.exon1Lag0019897.1.exon1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
cds.Lag0019897.1cds.Lag0019897.1_2CDS
cds.Lag0019897.1cds.Lag0019897.1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Lag0019897.1Lag0019897.1-proteinpolypeptide