Lag0019889.1 (mRNA) Sponge gourd (AG‐4) v1

Overview


Name	Lag0019889.1
Type	mRNA
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Retrotrans_gag domain-containing protein
Location	chr5: 46446909 .. 46447496 (+)
Sequence length	588
RNA-Seq Expression	Lag0019889.1
Synteny	Lag0019889.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAACTGTTCAAGCTTCAAACCCAAATTCCTCTTCTTCAGCAAATCAACCTACCAACCCTACTGTCATCGATCAGTATGCCAATCTTACTTCCTTCATCATTCGGATGGAACCAATTTGGTTCTTGTTTCCAAATTTCTCACCGAATCCAATTACTCCTCTTGGTATCACGCCATGCTTATCGGACTCACCGTGAAGAACAAGGTTGGCTTTGTCGATGGAACCCTAACACAACTGACGGTGAGATGCTCCACTCATGGAAGATTTGCAACAGTGTTGTCAAGGCTTGGATTCTCAACGCCTTATCCAAGGAGATACTCGCAAGCGTTAATTTCTTTGATTCGACTAGAGATATGTGGCTCGACCTGCAACAACGCTATCAGAGGAAGAATCGTCCTCGAATTTTTCAATTACGGCGGGAAATTTCCAATCTGGCGCAAGAACAGTTGTCTGTGACTGCGTATTTCGCCAAGTTAAAGACTTTGTGGAATGAACTTACCTCGTATAGACCTTCTTGTACTTGCGGTCGTTGTTCTTGTGGAGGTTGCAAGATTTGGTTCAATACTTCCAAACTGAACACGTTATGA

mRNA sequence

ATGAAACTGTTCAAGCTTCAAACCCAAATTCCTCTTCTTCAGCAAATCAACCTACCAACCCTACTGTCATCGATCAGTATGCCAATCTTACTTCCTTCATCATTCGGATGGAACCAATTTGGTTCTTGTTTCCAAATTTCTCACCGAATCCAATTACTCCTCTTGGTATCACGCCATGCTTATCGGACTCACCGTGAAGAACAAGGTTGGCTTTGTCGATGGAACCCTAACACAACTGACGGTGAGATGCTCCACTCATGGAAGATTTGCAACAGTGTTGTCAAGGCTTGGATTCTCAACGCCTTATCCAAGGAGATACTCGCAAGCGTTAATTTCTTTGATTCGACTAGAGATATGTGGCTCGACCTGCAACAACGCTATCAGAGGAAGAATCGTCCTCGAATTTTTCAATTACGGCGGGAAATTTCCAATCTGGCGCAAGAACAGTTGTCTGTGACTGCGTATTTCGCCAAGTTAAAGACTTTGTGGAATGAACTTACCTCGTATAGACCTTCTTGTACTTGCGGTCGTTGTTCTTGTGGAGGTTGCAAGATTTGGTTCAATACTTCCAAACTGAACACGTTATGA

Coding sequence (CDS)

ATGAAACTGTTCAAGCTTCAAACCCAAATTCCTCTTCTTCAGCAAATCAACCTACCAACCCTACTGTCATCGATCAGTATGCCAATCTTACTTCCTTCATCATTCGGATGGAACCAATTTGGTTCTTGTTTCCAAATTTCTCACCGAATCCAATTACTCCTCTTGGTATCACGCCATGCTTATCGGACTCACCGTGAAGAACAAGGTTGGCTTTGTCGATGGAACCCTAACACAACTGACGGTGAGATGCTCCACTCATGGAAGATTTGCAACAGTGTTGTCAAGGCTTGGATTCTCAACGCCTTATCCAAGGAGATACTCGCAAGCGTTAATTTCTTTGATTCGACTAGAGATATGTGGCTCGACCTGCAACAACGCTATCAGAGGAAGAATCGTCCTCGAATTTTTCAATTACGGCGGGAAATTTCCAATCTGGCGCAAGAACAGTTGTCTGTGACTGCGTATTTCGCCAAGTTAAAGACTTTGTGGAATGAACTTACCTCGTATAGACCTTCTTGTACTTGCGGTCGTTGTTCTTGTGGAGGTTGCAAGATTTGGTTCAATACTTCCAAACTGAACACGTTATGA

Protein sequence

MKLFKLQTQIPLLQQINLPTLLSSISMPILLPSSFGWNQFGSCFQISHRIQLLLLVSRHAYRTHREEQGWLCRWNPNTTDGEMLHSWKICNSVVKAWILNALSKEILASVNFFDSTRDMWLDLQQRYQRKNRPRIFQLRREISNLAQEQLSVTAYFAKLKTLWNELTSYRPSCTCGRCSCGGCKIWFNTSKLNTL

Homology

[Close]

BLAST of Lag0019889.1 vs. NCBI nr
Match: XP_038904477.1 (uncharacterized protein LOC120090845 [Benincasa hispida])

HSP 1 Score: 167.2 bits (422), Expect = 1.4e-37
Identity = 74/104 (71.15%), Postives = 90/104 (86.54%), Query Frame = 0


Query: 81  GEMLHSWKICNSVVKAWILNALSKEILASVNFFDSTRDMWLDLQQRYQRKNRPRIFQLRR 140
           GE+L SW ICN +V  WILN+LSKEI AS+NF DS +++W+DLQ+RYQRKNRPR+FQLRR
Sbjct: 23  GELLSSWIICNGIVTTWILNSLSKEISASINFSDSAQEIWVDLQERYQRKNRPRVFQLRR 82

Query: 141 EISNLAQEQLSVTAYFAKLKTLWNELTSYRPSCTCGRCSCGGCK 185
           E SNL+Q Q S+T Y+AKLKTLWNEL SYRPSC+CG+C+CGG K
Sbjct: 83  ENSNLSQNQDSITTYYAKLKTLWNELISYRPSCSCGKCTCGGVK 126

[Close]

BLAST of Lag0019889.1 vs. NCBI nr
Match: XP_038887168.1 (uncharacterized protein LOC120077355 [Benincasa hispida])

HSP 1 Score: 163.7 bits (413), Expect = 1.6e-36
Identity = 75/104 (72.12%), Postives = 89/104 (85.58%), Query Frame = 0


Query: 81  GEMLHSWKICNSVVKAWILNALSKEILASVNFFDSTRDMWLDLQQRYQRKNRPRIFQLRR 140
           GE+L SW ICN VV AWILN+LSKEI AS+NF DS +++W+DLQ+RYQR+NRPR+FQL R
Sbjct: 23  GELLSSWIICNGVVTAWILNSLSKEISASINFSDSPQEIWVDLQERYQRQNRPRVFQLCR 82

Query: 141 EISNLAQEQLSVTAYFAKLKTLWNELTSYRPSCTCGRCSCGGCK 185
           EISNL Q Q SVT Y+AKLKTLWNEL SYRPSC+CG+C+C G K
Sbjct: 83  EISNLMQNQDSVTTYYAKLKTLWNELISYRPSCSCGKCTCDGVK 126

[Close]

BLAST of Lag0019889.1 vs. NCBI nr
Match: XP_022148562.1 (uncharacterized protein LOC111017196 [Momordica charantia])

HSP 1 Score: 163.7 bits (413), Expect = 1.6e-36
Identity = 75/105 (71.43%), Postives = 91/105 (86.67%), Query Frame = 0


Query: 80  DGEMLHSWKICNSVVKAWILNALSKEILASVNFFDSTRDMWLDLQQRYQRKNRPRIFQLR 139
           D E L+SW ICN+VV AWILN+LSKEI ASV F DS R++WLDLQ+R+QR+NRPRIFQLR
Sbjct: 22  DDEHLNSWIICNNVVIAWILNSLSKEISASVLFADSAREIWLDLQERFQRQNRPRIFQLR 81

Query: 140 REISNLAQEQLSVTAYFAKLKTLWNELTSYRPSCTCGRCSCGGCK 185
           R++S L Q+QLSV+AYF KLKTLW EL +YRP+C+CGRC+CGG K
Sbjct: 82  RDLSTLVQDQLSVSAYFTKLKTLWTELAAYRPNCSCGRCTCGGVK 126

[Close]

BLAST of Lag0019889.1 vs. NCBI nr
Match: XP_022152756.1 (uncharacterized protein LOC111020399 [Momordica charantia])

HSP 1 Score: 159.5 bits (402), Expect = 3.0e-35
Identity = 72/104 (69.23%), Postives = 90/104 (86.54%), Query Frame = 0


Query: 81  GEMLHSWKICNSVVKAWILNALSKEILASVNFFDSTRDMWLDLQQRYQRKNRPRIFQLRR 140
           G++LHSW ICN+VV +WILN+LSKEI AS+ F DS R++WLDL++R++++NRPRIFQLRR
Sbjct: 79  GDLLHSWIICNNVVISWILNSLSKEISASILFSDSAREIWLDLKERFEKQNRPRIFQLRR 138

Query: 141 EISNLAQEQLSVTAYFAKLKTLWNELTSYRPSCTCGRCSCGGCK 185
           ++SNL Q+QLSV+AYF  LKTLW EL SY PSCT GRCSCGG K
Sbjct: 139 DLSNLVQDQLSVSAYFTLLKTLWTELNSYSPSCTFGRCSCGGVK 182

[Close]

BLAST of Lag0019889.1 vs. NCBI nr
Match: XP_038874906.1 (uncharacterized protein LOC120067409 [Benincasa hispida])

HSP 1 Score: 157.9 bits (398), Expect = 8.8e-35
Identity = 73/104 (70.19%), Postives = 84/104 (80.77%), Query Frame = 0


Query: 81  GEMLHSWKICNSVVKAWILNALSKEILASVNFFDSTRDMWLDLQQRYQRKNRPRIFQLRR 140
           G++ +SW ICNSVV  WI NALSK+I ASVNF DSTR++WLDLQQRYQ K  P IFQ  R
Sbjct: 93  GDLQNSWIICNSVVTTWIFNALSKKIAASVNFSDSTREIWLDLQQRYQSKKYPCIFQFHR 152

Query: 141 EISNLAQEQLSVTAYFAKLKTLWNELTSYRPSCTCGRCSCGGCK 185
           E+SNL Q+QLSV AYF KLKT WNEL SY+P C+CGRC+CGG K
Sbjct: 153 ELSNLVQDQLSVIAYFTKLKTAWNELASYQPICSCGRCTCGGVK 196

[Close]

BLAST of Lag0019889.1 vs. ExPASy TrEMBL
Match: A0A6J1D5E3 (uncharacterized protein LOC111017196 OS=Momordica charantia OX=3673 GN=LOC111017196 PE=4 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 7.8e-37
Identity = 75/105 (71.43%), Postives = 91/105 (86.67%), Query Frame = 0


Query: 80  DGEMLHSWKICNSVVKAWILNALSKEILASVNFFDSTRDMWLDLQQRYQRKNRPRIFQLR 139
           D E L+SW ICN+VV AWILN+LSKEI ASV F DS R++WLDLQ+R+QR+NRPRIFQLR
Sbjct: 22  DDEHLNSWIICNNVVIAWILNSLSKEISASVLFADSAREIWLDLQERFQRQNRPRIFQLR 81

Query: 140 REISNLAQEQLSVTAYFAKLKTLWNELTSYRPSCTCGRCSCGGCK 185
           R++S L Q+QLSV+AYF KLKTLW EL +YRP+C+CGRC+CGG K
Sbjct: 82  RDLSTLVQDQLSVSAYFTKLKTLWTELAAYRPNCSCGRCTCGGVK 126

[Close]

BLAST of Lag0019889.1 vs. ExPASy TrEMBL
Match: A0A6J1DIP8 (uncharacterized protein LOC111020399 OS=Momordica charantia OX=3673 GN=LOC111020399 PE=4 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 1.5e-35
Identity = 72/104 (69.23%), Postives = 90/104 (86.54%), Query Frame = 0


Query: 81  GEMLHSWKICNSVVKAWILNALSKEILASVNFFDSTRDMWLDLQQRYQRKNRPRIFQLRR 140
           G++LHSW ICN+VV +WILN+LSKEI AS+ F DS R++WLDL++R++++NRPRIFQLRR
Sbjct: 79  GDLLHSWIICNNVVISWILNSLSKEISASILFSDSAREIWLDLKERFEKQNRPRIFQLRR 138

Query: 141 EISNLAQEQLSVTAYFAKLKTLWNELTSYRPSCTCGRCSCGGCK 185
           ++SNL Q+QLSV+AYF  LKTLW EL SY PSCT GRCSCGG K
Sbjct: 139 DLSNLVQDQLSVSAYFTLLKTLWTELNSYSPSCTFGRCSCGGVK 182

[Close]

BLAST of Lag0019889.1 vs. ExPASy TrEMBL
Match: A0A6J1DNP7 (uncharacterized protein LOC111022065 OS=Momordica charantia OX=3673 GN=LOC111022065 PE=4 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 5.6e-35
Identity = 74/106 (69.81%), Postives = 90/106 (84.91%), Query Frame = 0


Query: 79  TDGEMLHSWKICNSVVKAWILNALSKEILASVNFFDSTRDMWLDLQQRYQRKNRPRIFQL 138
           TDG  LHSW ICN+VV +WI N+LSK+I ASV F DS  ++WLDL++R+QR+NRPRIFQL
Sbjct: 79  TDGR-LHSWIICNNVVISWIFNSLSKKISASVLFSDSAHEIWLDLKERFQRQNRPRIFQL 138

Query: 139 RREISNLAQEQLSVTAYFAKLKTLWNELTSYRPSCTCGRCSCGGCK 185
           RRE+SNL Q+QLSVTAYF +LKTLW+EL  YRP+C+CGRCS GG K
Sbjct: 139 RRELSNLTQDQLSVTAYFTRLKTLWSELALYRPACSCGRCSYGGVK 183

[Close]

BLAST of Lag0019889.1 vs. ExPASy TrEMBL
Match: A0A5J5BIH5 (Uncharacterized protein OS=Nyssa sinensis OX=561372 GN=F0562_023418 PE=4 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 4.9e-31
Identity = 63/109 (57.80%), Postives = 88/109 (80.73%), Query Frame = 0


Query: 76  PNTTDGEMLHSWKICNSVVKAWILNALSKEILASVNFFDSTRDMWLDLQQRYQRKNRPRI 135
           P  TD ++++SW   N++V +WILN++SKEI AS+ F  S R++WLDL+ R+Q++N PRI
Sbjct: 21  PQGTDNDLINSWIRNNNIVISWILNSVSKEISASIIFAASAREIWLDLRDRFQQRNGPRI 80

Query: 136 FQLRREISNLAQEQLSVTAYFAKLKTLWNELTSYRPSCTCGRCSCGGCK 185
           FQL+RE+ NL QEQ SV+ YF KLKT+W EL++YRP+C+CG+CSCGG K
Sbjct: 81  FQLKRELMNLRQEQSSVSIYFTKLKTIWEELSNYRPNCSCGKCSCGGVK 129

[Close]

BLAST of Lag0019889.1 vs. ExPASy TrEMBL
Match: A0A2Z7D4G6 (Uncharacterized protein OS=Dorcoceras hygrometricum OX=472368 GN=F511_34689 PE=4 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 3.2e-30
Identity = 64/109 (58.72%), Postives = 89/109 (81.65%), Query Frame = 0


Query: 76  PNTTDGEMLHSWKICNSVVKAWILNALSKEILASVNFFDSTRDMWLDLQQRYQRKNRPRI 135
           P+++D  +L+SW   N++V +WILN++SKEI AS+ F +S   +WLDL+ R+Q+ N PRI
Sbjct: 21  PDSSDPVLLNSWHRNNNIVISWILNSVSKEISASIIFAESAALIWLDLKDRFQQSNGPRI 80

Query: 136 FQLRREISNLAQEQLSVTAYFAKLKTLWNELTSYRPSCTCGRCSCGGCK 185
           FQLRRE+ NLAQEQLSV+ YF KLK LW+EL+++RP+CTCG+C+CGG K
Sbjct: 81  FQLRRELINLAQEQLSVSHYFTKLKGLWDELSNFRPNCTCGKCTCGGVK 129

The following BLAST results are available for this feature:

BLAST of Lag0019889.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038904477.1	1.4e-37	71.15	uncharacterized protein LOC120090845 [Benincasa hispida]	[more]
XP_038887168.1	1.6e-36	72.12	uncharacterized protein LOC120077355 [Benincasa hispida]	[more]
XP_022148562.1	1.6e-36	71.43	uncharacterized protein LOC111017196 [Momordica charantia]	[more]
XP_022152756.1	3.0e-35	69.23	uncharacterized protein LOC111020399 [Momordica charantia]	[more]
XP_038874906.1	8.8e-35	70.19	uncharacterized protein LOC120067409 [Benincasa hispida]	[more]

BLAST of Lag0019889.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Lag0019889.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D5E3	7.8e-37	71.43	uncharacterized protein LOC111017196 OS=Momordica charantia OX=3673 GN=LOC111017...	[more]
A0A6J1DIP8	1.5e-35	69.23	uncharacterized protein LOC111020399 OS=Momordica charantia OX=3673 GN=LOC111020...	[more]
A0A6J1DNP7	5.6e-35	69.81	uncharacterized protein LOC111022065 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]
A0A5J5BIH5	4.9e-31	57.80	Uncharacterized protein OS=Nyssa sinensis OX=561372 GN=F0562_023418 PE=4 SV=1	[more]
A0A2Z7D4G6	3.2e-30	58.72	Uncharacterized protein OS=Dorcoceras hygrometricum OX=472368 GN=F511_34689 PE=4...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 87..168 e-value: 2.9E-9 score: 36.8
None	No IPR available	PANTHER	PTHR37610:SF57	GAG-POLYPEPTIDE OF LTR COPIA-TYPE-RELATED	coord: 76..180
None	No IPR available	PANTHER	PTHR37610	FAMILY NOT NAMED	coord: 76..180

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lag0019889	Lag0019889	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lag0019889.1.exon1	Lag0019889.1.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.Lag0019889.1	cds.Lag0019889.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lag0019889.1	Lag0019889.1-protein	polypeptide