Lag0018812.1 (mRNA) Sponge gourd (AG‐4) v1

Overview


Name	Lag0018812.1
Type	mRNA
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	transcription factor bHLH66-like
Location	chr5: 34839994 .. 34840473 (-)
Sequence length	480
RNA-Seq Expression	Lag0018812.1
Synteny	Lag0018812.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGACTCACCAACTCCTTCCCCGACCTCCATACCCACCGCCGTAACCGCCCGCCAGACACCGACGCCTCCCAACTCCACCACCACCAAAACCACCTCCAAACCTCCCATCTCCATCCTCCTCCTTTCTCCTCCGACGATTTCCTCGACCAAATCCTCTCCTCCATCCCCCCTCCCTGGGAACTCCCCGCCGACCTCCCTCCCCAACCACCGCCGCCGCCGAATCCCGACAATACCGCCTTTCAGATCGGCGACACCACTCCAGCGGCCAAAATGGCCATGGCCATGTTTCACCAGCAGTTACTCGCCACTGCGGCTGTAGATTCTGGCCTCCTTCCAATGCCTGGTAACGACATCGTCGAAGTCGAAGGCTCTTCGTCCTTCAAATGCCCTAATCCGGTACTCGAAATCGAACTCTCAAATCATTCAATTCGAAAATTAGGTTTCGAATCAGTACCAAACCAATTCGATTTCCTGTAG

mRNA sequence

ATGAGACTCACCAACTCCTTCCCCGACCTCCATACCCACCGCCGTAACCGCCCGCCAGACACCGACGCCTCCCAACTCCACCACCACCAAAACCACCTCCAAACCTCCCATCTCCATCCTCCTCCTTTCTCCTCCGACGATTTCCTCGACCAAATCCTCTCCTCCATCCCCCCTCCCTGGGAACTCCCCGCCGACCTCCCTCCCCAACCACCGCCGCCGCCGAATCCCGACAATACCGCCTTTCAGATCGGCGACACCACTCCAGCGGCCAAAATGGCCATGGCCATGTTTCACCAGCAGTTACTCGCCACTGCGGCTGTAGATTCTGGCCTCCTTCCAATGCCTGGTAACGACATCGTCGAAGTCGAAGGCTCTTCGTCCTTCAAATGCCCTAATCCGGTACTCGAAATCGAACTCTCAAATCATTCAATTCGAAAATTAGGTTTCGAATCAGTACCAAACCAATTCGATTTCCTGTAG

Coding sequence (CDS)

ATGAGACTCACCAACTCCTTCCCCGACCTCCATACCCACCGCCGTAACCGCCCGCCAGACACCGACGCCTCCCAACTCCACCACCACCAAAACCACCTCCAAACCTCCCATCTCCATCCTCCTCCTTTCTCCTCCGACGATTTCCTCGACCAAATCCTCTCCTCCATCCCCCCTCCCTGGGAACTCCCCGCCGACCTCCCTCCCCAACCACCGCCGCCGCCGAATCCCGACAATACCGCCTTTCAGATCGGCGACACCACTCCAGCGGCCAAAATGGCCATGGCCATGTTTCACCAGCAGTTACTCGCCACTGCGGCTGTAGATTCTGGCCTCCTTCCAATGCCTGGTAACGACATCGTCGAAGTCGAAGGCTCTTCGTCCTTCAAATGCCCTAATCCGGTACTCGAAATCGAACTCTCAAATCATTCAATTCGAAAATTAGGTTTCGAATCAGTACCAAACCAATTCGATTTCCTGTAG

Protein sequence

MRLTNSFPDLHTHRRNRPPDTDASQLHHHQNHLQTSHLHPPPFSSDDFLDQILSSIPPPWELPADLPPQPPPPPNPDNTAFQIGDTTPAAKMAMAMFHQQLLATAAVDSGLLPMPGNDIVEVEGSSSFKCPNPVLEIELSNHSIRKLGFESVPNQFDFL

Homology

[Close]

BLAST of Lag0018812.1 vs. NCBI nr
Match: XP_022937836.1 (transcription factor bHLH69-like [Cucurbita moschata])

HSP 1 Score: 215.7 bits (548), Expect = 2.9e-52
Identity = 113/143 (79.02%), Postives = 122/143 (85.31%), Query Frame = 0


Query: 1   MRLTNSFPDLHTHRRNRPPDTDASQLHHHQNHLQTSHLHPPPFSSDDFLDQILSSIPPPW 60
           MRLTNS PDLH++RRNRPP+TDASQLHHHQNHLQ SHLHP  FSSDDFLDQILSSIP PW
Sbjct: 1   MRLTNSLPDLHSNRRNRPPETDASQLHHHQNHLQASHLHPSSFSSDDFLDQILSSIPLPW 60

Query: 61  ELP-------ADLPPQPPP-PPNPDNTAFQIGDTTPAAKMAMAMFHQQLLATAAVDSGLL 120
           ELP       ++LPPQPP  P NPDN AFQIGDTTPAAKMAMAM HQQLL TAA DS LL
Sbjct: 61  ELPTGLPNPHSNLPPQPPQLPRNPDNAAFQIGDTTPAAKMAMAMLHQQLLTTAA-DSSLL 120

Query: 121 PMPGNDIVEVEGSSSFKCPNPVL 136
            +PGND+VEVEGSSSFKCPNP++
Sbjct: 121 TLPGNDVVEVEGSSSFKCPNPII 142

[Close]

BLAST of Lag0018812.1 vs. NCBI nr
Match: KAG6586341.1 (Transcription factor basic helix-loop-helix 66, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 213.4 bits (542), Expect = 1.4e-51
Identity = 112/143 (78.32%), Postives = 121/143 (84.62%), Query Frame = 0


Query: 1   MRLTNSFPDLHTHRRNRPPDTDASQLHHHQNHLQTSHLHPPPFSSDDFLDQILSSIPPPW 60
           MRLTNS PD H++RRNRPP+TDASQLHHHQNHLQ SHLHP  FSSDDFLDQILSSIP PW
Sbjct: 1   MRLTNSLPDRHSNRRNRPPETDASQLHHHQNHLQASHLHPSSFSSDDFLDQILSSIPLPW 60

Query: 61  ELP-------ADLPPQPPP-PPNPDNTAFQIGDTTPAAKMAMAMFHQQLLATAAVDSGLL 120
           ELP       ++LPPQPP  P NPDN AFQIGDTTPAAKMAMAM HQQLL TAA DS LL
Sbjct: 61  ELPTGLPNPHSNLPPQPPQLPRNPDNAAFQIGDTTPAAKMAMAMLHQQLLTTAA-DSSLL 120

Query: 121 PMPGNDIVEVEGSSSFKCPNPVL 136
            +PGND+VEVEGSSSFKCPNP++
Sbjct: 121 TLPGNDVVEVEGSSSFKCPNPII 142

[Close]

BLAST of Lag0018812.1 vs. NCBI nr
Match: KAG7021187.1 (Transcription factor bHLH66, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 211.5 bits (537), Expect = 5.5e-51
Identity = 112/141 (79.43%), Postives = 119/141 (84.40%), Query Frame = 0


Query: 1   MRLTNSFPDLHTHRRNRPPDTDASQLHHHQNHLQTSHLHPPPFSSDDFLDQILSSIPPPW 60
           MRLTNS PD H++RRNRPP+TDASQLHHHQNHLQ SHLHP  FSSDDFLDQILSSIP PW
Sbjct: 1   MRLTNSLPDRHSNRRNRPPETDASQLHHHQNHLQASHLHPSSFSSDDFLDQILSSIPLPW 60

Query: 61  ELP-------ADLPPQPPP-PPNPDNTAFQIGDTTPAAKMAMAMFHQQLLATAAVDSGLL 120
           ELP       ++LPPQPP  P NPDN AFQIGDTTPAAKMAMAM HQQLL TAA DS LL
Sbjct: 61  ELPTGLPNPHSNLPPQPPQLPRNPDNAAFQIGDTTPAAKMAMAMLHQQLLTTAA-DSSLL 120

Query: 121 PMPGNDIVEVEGSSSFKCPNP 134
            +PGND+VEVEGSSSFKCPNP
Sbjct: 121 TLPGNDVVEVEGSSSFKCPNP 140

[Close]

BLAST of Lag0018812.1 vs. NCBI nr
Match: XP_023538199.1 (transcription factor bHLH69-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 207.2 bits (526), Expect = 1.0e-49
Identity = 110/143 (76.92%), Postives = 119/143 (83.22%), Query Frame = 0


Query: 1   MRLTNSFPDLHTHRRNRPPDTDASQLHHHQNHLQTSHLHPPPFSSDDFLDQILSSIPPPW 60
           MRLTNS PD H++RRNRPP+TDASQLHHHQNHLQTSHLHP  FSSDDFLDQILSSIP PW
Sbjct: 1   MRLTNSLPDRHSNRRNRPPETDASQLHHHQNHLQTSHLHPSSFSSDDFLDQILSSIPLPW 60

Query: 61  ELP-------ADLPPQPPP-PPNPDNTAFQIGDTTPAAKMAMAMFHQQLLATAAVDSGLL 120
           ELP       ++LPPQPP    N DN AFQIGDTTPAAKMAMAM HQQLL TAA DS LL
Sbjct: 61  ELPTGLPNPHSNLPPQPPQISRNSDNAAFQIGDTTPAAKMAMAMLHQQLLTTAA-DSSLL 120

Query: 121 PMPGNDIVEVEGSSSFKCPNPVL 136
            +PGND+VEVEGS SFKCPNP++
Sbjct: 121 TLPGNDVVEVEGSPSFKCPNPII 142

[Close]

BLAST of Lag0018812.1 vs. NCBI nr
Match: XP_022965767.1 (transcription factor bHLH69-like [Cucurbita maxima])

HSP 1 Score: 204.1 bits (518), Expect = 8.7e-49
Identity = 108/143 (75.52%), Postives = 118/143 (82.52%), Query Frame = 0


Query: 1   MRLTNSFPDLHTHRRNRPPDTDASQLHHHQNHLQTSHLHPPPFSSDDFLDQILSSIPPPW 60
           MRLTNS PD H++RRNRPP+TD SQ HHHQNHLQTSHLH   FSSDDFLDQILSSIP PW
Sbjct: 1   MRLTNSLPDRHSNRRNRPPETDTSQHHHHQNHLQTSHLHLSSFSSDDFLDQILSSIPLPW 60

Query: 61  ELP-------ADLPPQPPP-PPNPDNTAFQIGDTTPAAKMAMAMFHQQLLATAAVDSGLL 120
           ELP       ++LPPQPPP   NPDN AFQIGDTTPAAK+AMAM HQQLL TAA DS LL
Sbjct: 61  ELPTGLPNPHSNLPPQPPPLSQNPDNAAFQIGDTTPAAKIAMAMLHQQLLTTAA-DSSLL 120

Query: 121 PMPGNDIVEVEGSSSFKCPNPVL 136
            +PGND+VEVEGS SFKCPNP++
Sbjct: 121 TLPGNDVVEVEGSPSFKCPNPII 142

The following BLAST results are available for this feature:

BLAST of Lag0018812.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022937836.1	2.9e-52	79.02	transcription factor bHLH69-like [Cucurbita moschata]	[more]
KAG6586341.1	1.4e-51	78.32	Transcription factor basic helix-loop-helix 66, partial [Cucurbita argyrosperma ...	[more]
KAG7021187.1	5.5e-51	79.43	Transcription factor bHLH66, partial [Cucurbita argyrosperma subsp. argyrosperma...	[more]
XP_023538199.1	1.0e-49	76.92	transcription factor bHLH69-like [Cucurbita pepo subsp. pepo]	[more]
XP_022965767.1	8.7e-49	75.52	transcription factor bHLH69-like [Cucurbita maxima]	[more]

BLAST of Lag0018812.1 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..79
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 60..78
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 7..27

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lag0018812	Lag0018812	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lag0018812.1.exon1	Lag0018812.1.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.Lag0018812.1	cds.Lag0018812.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lag0018812.1	Lag0018812.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006357	regulation of transcription by RNA polymerase II
cellular_component	GO:0005634	nucleus
molecular_function	GO:0000981	DNA-binding transcription factor activity, RNA polymerase II-specific
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0000978	RNA polymerase II cis-regulatory region sequence-specific DNA binding