Lag0018177.1 (mRNA) Sponge gourd (AG‐4) v1

Overview


Name	Lag0018177.1
Type	mRNA
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	RT_RNaseH_2 domain-containing protein
Location	chr5: 18125780 .. 18127253 (-)
Sequence length	1173
RNA-Seq Expression	Lag0018177.1
Synteny	Lag0018177.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTAAAACAAGAGCTCGAAAAGAGAGAGAAAGTGAAGAGGAAGAGGTGCCGGTTACACCGGAAGTGCAGAAAGGAAAAACGAAGAAAAAGAGAACGTCGGAGGAAAAAGAGGCTAAACGAAGAAGGAGGCAGCAGAGGGCTGCGGAGCAAGAAACGATTCAAGAAGAGACGGTGAATGTCGCAGATACAGAGGGAGCTACACATCCTGAGACAGGACCGATAATGTCTGTTGCGGTTCAAGAAGGGAATGTCGAGAAACATCAAGAAACAGAGGGTGAAGAGCAGGACGAAGGTGAGCCTGGCGAGGAGAAAACACCGGAGCAGGAGGCTCATATTGAAATCATTATGCCGAACCACCAAAGCGCCGCCGCATCAAGAGGAAGGCGGGTCGCGTGAAGGTGTTCGGAACACGCCATCGCCTCCGGCATCGGACTCTGAGGAAGAAAAAAGGGAAGCGAGAATAAGGAAAAAGAGAAGAGGCAAGAAAGGCGGAAGAAGAACGTTTGCGTGTCCAGAGAGAAAGCAGGGCAAAGGAATTGCCGAAGCATCAGGAGAAATTGAGGAGCCGAGGGCGCCATTCATTCGCTTCGTCAACGATCTTGCCCGAGCAAAATACCAGGAGGTACTGAAACGGGACTTCTTGTTCGAACGTGGATTTGGCATGATTTACCTAGGTTTTGGAGCTGGAATAGTGAACCTCGGTTGAGGAATTTTGTGCGAAGCCAGAACCTGTGAATGCCAACATTGTTCGAGAATTTTACGCCAATCTTGAGGTTAAGAATGATTTTGAGGTCATTGTTCGAGGAGTGCCTGTACAGTGGAGTCCTGAGGCCATCAATGAAATGTTCGATCTCCAGGATTTCCGCATGCCGTTTTTAATGAGATGGTGGCTGCACCATCTAGTGATCAACTGAGTGCGGCTGTCGGGAGGTAGGCATTGAGGGGGCCCAATGGAGGGTGTCGCAGACGCGGAAGCATACGTTTCAAGCTGCTTATTTGAAGAGTGAAGCCAACACTTAGATGGGCTTCATTAGGCTCCGCTTGCTGCCGACAACACACGACTCCACGGTATCTCGGGACAGGGTATTGCTTGCTTTTGCCATTCTTCTCGATGAGTATAGATGTAGGAAAAATTATTTCTTCTGAGATTGTTGATTGCTGGAAGAAGAAGGTGGGGAAGCTATTTTTTCCGAACGCGATTACGATGTTATGCAGCAGGCGGAGCCTAAGGGAATCATTGACACACCTAATCTGGTGCGGCTTCACGTATCAAGAGGTTCGCCAGGGTGGGCTTGTGTATGGCGTCAATCAAATCCTAGAGCAACTGTCAGTATTGACCAGTAGGTTAGAGTTTGCTGAAAGGCAAGCTCAGACCTACTGGACTTATGCTAAGAGGAGAGATGATGCGCTAAGGGGGGCCTTGCAAAGCAATTTCTCAACACCATATCAGCCTTCCAATGTTTCCCGATGA

mRNA sequence

ATGGCTAAAACAAGAGCTCGAAAAGAGAGAGAAAGTGAAGAGGAAGAGGTGCCGGTTACACCGGAAGTGCAGAAAGGAAAAACGAAGAAAAAGAGAACGTCGGAGGAAAAAGAGGCTAAACGAAGAAGGAGGCAGCAGAGGGCTGCGGAGCAAGAAACGATTCAAGAAGAGACGGTGAATGTCGCAGATACAGAGGGAGCTACACATCCTGAGACAGGACCGATAATGTCTGTTGCGGTTCAAGAAGGGAATGTCGAGAAACATCAAGAAACAGAGGGTGAAGAGCAGGACGAAGCGCCGCCGCATCAAGAGGAAGGCGGGTCGCGTGAAGGTGTTCGGAACACGCCATCGCCTCCGGCATCGGACTCTGAGGAAGAAAAAAGGGAAGCGAGAATAAGGAAAAAGAGAAGAGGCAAGAAAGGCGGAAGAAGAACGTTTGCGTGTCCAGAGAGAAAGCAGGGCAAAGGAATTGCCGAAGCATCAGGAGAAATTGAGGAGCCGAGGGCGCCATTCATTCGCTTCGTCAACGATCTTGCCCGAGCAAAATACCAGGAGCCAGAACCTGTGAATGCCAACATTGTTCGAGAATTTTACGCCAATCTTGAGGTTAAGAATGATTTTGAGGTCATTGTTCGAGGAGTGCCTGTACAGTGGAGTCCTGAGGCCATCAATGAAATGTTCGATCTCCAGGATTTCCGCATGCCAGTGAAGCCAACACTTAGATGGGCTTCATTAGGCTCCGCTTGCTGCCGACAACACACGACTCCACGGTATCTCGGGACAGGGTATTGCTTGCTTTTGCCATTCTTCTCGATGAGTATAGATGTAGGAAAAATTATTTCTTCTGAGATTGTTGATTGCTGGAAGAAGAAGGTGGGGAAGCTATTTTTTCCGAACGCGATTACGATGTTATGCAGCAGGCGGAGCCTAAGGGAATCATTGACACACCTAATCTGGTGCGGCTTCACGTATCAAGAGGTTCGCCAGGGTGGGCTTGTGTATGGCGTCAATCAAATCCTAGAGCAACTGTCAGTATTGACCAGTAGGTTAGAGTTTGCTGAAAGGCAAGCTCAGACCTACTGGACTTATGCTAAGAGGAGAGATGATGCGCTAAGGGGGGCCTTGCAAAGCAATTTCTCAACACCATATCAGCCTTCCAATGTTTCCCGATGA

Coding sequence (CDS)

ATGGCTAAAACAAGAGCTCGAAAAGAGAGAGAAAGTGAAGAGGAAGAGGTGCCGGTTACACCGGAAGTGCAGAAAGGAAAAACGAAGAAAAAGAGAACGTCGGAGGAAAAAGAGGCTAAACGAAGAAGGAGGCAGCAGAGGGCTGCGGAGCAAGAAACGATTCAAGAAGAGACGGTGAATGTCGCAGATACAGAGGGAGCTACACATCCTGAGACAGGACCGATAATGTCTGTTGCGGTTCAAGAAGGGAATGTCGAGAAACATCAAGAAACAGAGGGTGAAGAGCAGGACGAAGCGCCGCCGCATCAAGAGGAAGGCGGGTCGCGTGAAGGTGTTCGGAACACGCCATCGCCTCCGGCATCGGACTCTGAGGAAGAAAAAAGGGAAGCGAGAATAAGGAAAAAGAGAAGAGGCAAGAAAGGCGGAAGAAGAACGTTTGCGTGTCCAGAGAGAAAGCAGGGCAAAGGAATTGCCGAAGCATCAGGAGAAATTGAGGAGCCGAGGGCGCCATTCATTCGCTTCGTCAACGATCTTGCCCGAGCAAAATACCAGGAGCCAGAACCTGTGAATGCCAACATTGTTCGAGAATTTTACGCCAATCTTGAGGTTAAGAATGATTTTGAGGTCATTGTTCGAGGAGTGCCTGTACAGTGGAGTCCTGAGGCCATCAATGAAATGTTCGATCTCCAGGATTTCCGCATGCCAGTGAAGCCAACACTTAGATGGGCTTCATTAGGCTCCGCTTGCTGCCGACAACACACGACTCCACGGTATCTCGGGACAGGGTATTGCTTGCTTTTGCCATTCTTCTCGATGAGTATAGATGTAGGAAAAATTATTTCTTCTGAGATTGTTGATTGCTGGAAGAAGAAGGTGGGGAAGCTATTTTTTCCGAACGCGATTACGATGTTATGCAGCAGGCGGAGCCTAAGGGAATCATTGACACACCTAATCTGGTGCGGCTTCACGTATCAAGAGGTTCGCCAGGGTGGGCTTGTGTATGGCGTCAATCAAATCCTAGAGCAACTGTCAGTATTGACCAGTAGGTTAGAGTTTGCTGAAAGGCAAGCTCAGACCTACTGGACTTATGCTAAGAGGAGAGATGATGCGCTAAGGGGGGCCTTGCAAAGCAATTTCTCAACACCATATCAGCCTTCCAATGTTTCCCGATGA

Protein sequence

MAKTRARKERESEEEEVPVTPEVQKGKTKKKRTSEEKEAKRRRRQQRAAEQETIQEETVNVADTEGATHPETGPIMSVAVQEGNVEKHQETEGEEQDEAPPHQEEGGSREGVRNTPSPPASDSEEEKREARIRKKRRGKKGGRRTFACPERKQGKGIAEASGEIEEPRAPFIRFVNDLARAKYQEPEPVNANIVREFYANLEVKNDFEVIVRGVPVQWSPEAINEMFDLQDFRMPVKPTLRWASLGSACCRQHTTPRYLGTGYCLLLPFFSMSIDVGKIISSEIVDCWKKKVGKLFFPNAITMLCSRRSLRESLTHLIWCGFTYQEVRQGGLVYGVNQILEQLSVLTSRLEFAERQAQTYWTYAKRRDDALRGALQSNFSTPYQPSNVSR

Homology

[Close]

BLAST of Lag0018177.1 vs. NCBI nr
Match: PON78020.1 (hypothetical protein PanWU01x14_023740 [Parasponia andersonii])

HSP 1 Score: 88.2 bits (217), Expect = 1.7e-13
Identity = 82/258 (31.78%), Postives = 103/258 (39.92%), Query Frame = 0


Query: 193 IVREFYANLEVKNDFEVIVRGVPVQWSPEAINEMFDLQD--------FRMPVKPTL---- 252
           +VREFYANL    +  + VRGV V WS EAIN +F L D             +P L    
Sbjct: 16  LVREFYANLTDPEENTIYVRGVQVSWSEEAINAVFGLGDPVDEHSEFIENITEPELITVL 75

Query: 253 --------RW---ASLGSACCRQHTTP-----------RYLGTGY--------CLLLPFF 312
                    W   A     C R   TP           R L T +         LLL   
Sbjct: 76  ETVAAAGAEWNVSAQGAYTCIRSALTPAAKVWYHFLKSRLLPTTHGKIVSKDRMLLLHSM 135

Query: 313 --SMSIDVGKIISSEIVDCWKKKVGKLFFPNAITMLCSRRSLRESLTHLIWCG----FTY 372
               SI+VG++I SEI  C  +K G LFFP+ IT LC       +   L   G       
Sbjct: 136 LNGKSINVGRMIHSEIRACAAQKTGALFFPSLITRLCRNAPFLVNEEKLHNTGEIDAIAV 195

Query: 373 QEVRQGGLVYGVNQ-----------------ILEQLSVLTSRL---EFAERQAQTYWTYA 383
             + Q G      Q                 +L+QL  L  RL   E   +Q Q +W Y+
Sbjct: 196 ARITQEGPTESTQQPSSSRPAAASSSRTNGDVLQQLKALEQRLSQQEHTHKQQQQFWAYS 255

[Close]

BLAST of Lag0018177.1 vs. NCBI nr
Match: PON46472.1 (hypothetical protein PanWU01x14_251180, partial [Parasponia andersonii])

HSP 1 Score: 83.2 bits (204), Expect = 5.5e-12
Identity = 83/278 (29.86%), Postives = 102/278 (36.69%), Query Frame = 0


Query: 186 PEPVNANIVREFYANLEVKNDFEVIVRGVPVQWSPEAINEMFDLQD-------------- 245
           PE     +VREFYANL    +  V VRGV V WS EAIN +F L D              
Sbjct: 79  PEDPIVPLVREFYANLTDPEENTVYVRGVQVSWSEEAINAVFGLGDPVDEHSEFIQNITQ 138

Query: 246 ------FRMPVKPTLRW---ASLGSACCRQHTTP-----------RYLGTGY-------- 305
                           W   A     C R   TP           R L T +        
Sbjct: 139 QDLITVLETVAAAGAEWNVSAQGAYTCIRSALTPAAKVWYHFLKSRLLPTTHGKTVSKDR 198

Query: 306 CLLL--PFFSMSIDVGKIISSEIVDCWKKKVGKLFFPNAITMLCSRRS----LRESLTHL 365
            LLL       SI+VG++I SEI  C  +K G LFFP+ IT LC        + E   H 
Sbjct: 199 MLLLHSMLIGKSINVGRMIHSEIRACAARKTGALFFPSLITRLCRNARAPFLVNEEKLHN 258

Query: 366 IW--CGFTYQEVRQGGLVYGVNQ-----------------ILEQLSVLTSR--------- 383
                      + Q G      Q                 IL+QL  L  R         
Sbjct: 259 TGEIDAIAVARIAQEGPTESTQQPSSSRPATASSNRTNGDILQQLKALEQRLSQQEVQQY 318

[Close]

BLAST of Lag0018177.1 vs. NCBI nr
Match: TYH01644.1 (hypothetical protein ES288_A09G075900v1 [Gossypium darwinii])

HSP 1 Score: 70.5 bits (171), Expect = 3.7e-08
Identity = 60/216 (27.78%), Postives = 98/216 (45.37%), Query Frame = 0


Query: 155 KGIAEASGEIEEPRAPFIRFVNDLARAKYQEPEPV-NANIVREFYANLEVKNDFEVIVRG 214
           KG    S ++     P  + +N L   ++ +   V +  +V+EFYA+L  ++  EVIVR 
Sbjct: 40  KGFNFKSNDLMVVPVPIKKIINVLKWERFSDARSVPDDELVQEFYASLTTQDATEVIVRK 99

Query: 215 VPVQWSPEAINEMFDLQDFR----MPVKPTLRW----------ASLGS----------AC 274
             V  + ++IN++F+L D       P+   + W           +LGS          +C
Sbjct: 100 KKVPLTSKSINDLFNLPDVEKDEYYPMMNHINWDFLQQVLNVVKNLGSQWIIRKYESHSC 159

Query: 275 CRQHTTP------RYLGTGYCLLLPFFSMSID---------------VGKIISSEIVDCW 325
            R++  P       ++   + L+   F++SI+               VGKII  EI DC 
Sbjct: 160 RREYLKPIGNVWFYFIRYSFMLISYSFTISIERMLLLYAILTKNSTNVGKIIIKEINDCA 219

[Close]

BLAST of Lag0018177.1 vs. NCBI nr
Match: KAE8695166.1 (hypothetical protein F3Y22_tig00110733pilonHSYRG00282 [Hibiscus syriacus])

HSP 1 Score: 68.2 bits (165), Expect = 1.8e-07
Identity = 54/182 (29.67%), Postives = 74/182 (40.66%), Query Frame = 0


Query: 184 QEPEPVNANIVREFYANLEVKNDFEVIVRGVPVQWSPEAINEMFDLQ-------DFRMPV 243
           + P PVNA IV+EFY+N+   N   V+VRG+ ++++P AIN  F LQ        F   V
Sbjct: 66  KHPVPVNATIVKEFYSNITEPNQHAVMVRGISIRFTPTAINRYFKLQVADDHNTSFAQEV 125

Query: 244 K-------------PTLRW------------------ASLGSACCRQHTTPRYLGTGY-- 303
                         P  RW                    L +   +    P    T    
Sbjct: 126 DHETYQGILEDLCLPGTRWNGQQLKRKTVDRDRLLPHVKLWNHFMKHKLMPTSHNTTVSC 185

Query: 304 --CLLLP--FFSMSIDVGKIISSEIVDCWKKKVGKLFFPNAITMLCSRRSLRESLTHLIW 322
              LLL       +ID+GKII      C K++   L FPN IT LC ++ +RE +   I 
Sbjct: 186 QRMLLLHSILTGRTIDIGKIIVEHAHLCLKRQASALVFPNLITALCRKKKVREEMFDEIL 245

[Close]

BLAST of Lag0018177.1 vs. NCBI nr
Match: KAE8680640.1 (hypothetical protein F3Y22_tig00111372pilonHSYRG00020 [Hibiscus syriacus])

HSP 1 Score: 67.4 bits (163), Expect = 3.1e-07
Identity = 52/174 (29.89%), Postives = 71/174 (40.80%), Query Frame = 0


Query: 184 QEPEPVNANIVREFYANLEVKNDFEVIVRGVPVQWSPEAINEMFDLQD-------FRMPV 243
           + P  VNA++V+EFYAN+   N   + VRG  + ++P AI   F LQD       F    
Sbjct: 68  RHPGSVNASVVKEFYANISKPNQHSIFVRGKQIHFTPSAIIRYFHLQDVVDNHAKFEEEA 127

Query: 244 KPTLRWASLGSACC----------------RQHTTPR-----------YLGTGY------ 303
                   L   C                 R+   PR            + T Y      
Sbjct: 128 DSNTYDRVLEDLCFENTEWNGRQTSRYSVNRERLQPRAKLWNHFLKHKLMPTSYNTTVSL 187

Query: 304 --CLLLPFF--SMSIDVGKIISSEIVDCWKKKVGKLFFPNAITMLCSRRSLRES 314
              LLL     S  IDVG+II  ++ DC  KK   L FPN IT LC ++ ++E+
Sbjct: 188 SRLLLLHSIKESCPIDVGRIIVQQVNDCLGKKASALVFPNLITALCRKKKVKEN 241

[Close]

BLAST of Lag0018177.1 vs. ExPASy TrEMBL
Match: A0A2P5DXM3 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_023740 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 8.3e-14
Identity = 82/258 (31.78%), Postives = 103/258 (39.92%), Query Frame = 0


Query: 193 IVREFYANLEVKNDFEVIVRGVPVQWSPEAINEMFDLQD--------FRMPVKPTL---- 252
           +VREFYANL    +  + VRGV V WS EAIN +F L D             +P L    
Sbjct: 16  LVREFYANLTDPEENTIYVRGVQVSWSEEAINAVFGLGDPVDEHSEFIENITEPELITVL 75

Query: 253 --------RW---ASLGSACCRQHTTP-----------RYLGTGY--------CLLLPFF 312
                    W   A     C R   TP           R L T +         LLL   
Sbjct: 76  ETVAAAGAEWNVSAQGAYTCIRSALTPAAKVWYHFLKSRLLPTTHGKIVSKDRMLLLHSM 135

Query: 313 --SMSIDVGKIISSEIVDCWKKKVGKLFFPNAITMLCSRRSLRESLTHLIWCG----FTY 372
               SI+VG++I SEI  C  +K G LFFP+ IT LC       +   L   G       
Sbjct: 136 LNGKSINVGRMIHSEIRACAAQKTGALFFPSLITRLCRNAPFLVNEEKLHNTGEIDAIAV 195

Query: 373 QEVRQGGLVYGVNQ-----------------ILEQLSVLTSRL---EFAERQAQTYWTYA 383
             + Q G      Q                 +L+QL  L  RL   E   +Q Q +W Y+
Sbjct: 196 ARITQEGPTESTQQPSSSRPAAASSSRTNGDVLQQLKALEQRLSQQEHTHKQQQQFWAYS 255

[Close]

BLAST of Lag0018177.1 vs. ExPASy TrEMBL
Match: A0A2P5BCG4 (Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x14_251180 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 2.7e-12
Identity = 83/278 (29.86%), Postives = 102/278 (36.69%), Query Frame = 0


Query: 186 PEPVNANIVREFYANLEVKNDFEVIVRGVPVQWSPEAINEMFDLQD-------------- 245
           PE     +VREFYANL    +  V VRGV V WS EAIN +F L D              
Sbjct: 79  PEDPIVPLVREFYANLTDPEENTVYVRGVQVSWSEEAINAVFGLGDPVDEHSEFIQNITQ 138

Query: 246 ------FRMPVKPTLRW---ASLGSACCRQHTTP-----------RYLGTGY-------- 305
                           W   A     C R   TP           R L T +        
Sbjct: 139 QDLITVLETVAAAGAEWNVSAQGAYTCIRSALTPAAKVWYHFLKSRLLPTTHGKTVSKDR 198

Query: 306 CLLL--PFFSMSIDVGKIISSEIVDCWKKKVGKLFFPNAITMLCSRRS----LRESLTHL 365
            LLL       SI+VG++I SEI  C  +K G LFFP+ IT LC        + E   H 
Sbjct: 199 MLLLHSMLIGKSINVGRMIHSEIRACAARKTGALFFPSLITRLCRNARAPFLVNEEKLHN 258

Query: 366 IW--CGFTYQEVRQGGLVYGVNQ-----------------ILEQLSVLTSR--------- 383
                      + Q G      Q                 IL+QL  L  R         
Sbjct: 259 TGEIDAIAVARIAQEGPTESTQQPSSSRPATASSNRTNGDILQQLKALEQRLSQQEVQQY 318

[Close]

BLAST of Lag0018177.1 vs. ExPASy TrEMBL
Match: A0A5D2F6I2 (Uncharacterized protein OS=Gossypium darwinii OX=34276 GN=ES288_A09G075900v1 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 1.8e-08
Identity = 60/216 (27.78%), Postives = 98/216 (45.37%), Query Frame = 0


Query: 155 KGIAEASGEIEEPRAPFIRFVNDLARAKYQEPEPV-NANIVREFYANLEVKNDFEVIVRG 214
           KG    S ++     P  + +N L   ++ +   V +  +V+EFYA+L  ++  EVIVR 
Sbjct: 40  KGFNFKSNDLMVVPVPIKKIINVLKWERFSDARSVPDDELVQEFYASLTTQDATEVIVRK 99

Query: 215 VPVQWSPEAINEMFDLQDFR----MPVKPTLRW----------ASLGS----------AC 274
             V  + ++IN++F+L D       P+   + W           +LGS          +C
Sbjct: 100 KKVPLTSKSINDLFNLPDVEKDEYYPMMNHINWDFLQQVLNVVKNLGSQWIIRKYESHSC 159

Query: 275 CRQHTTP------RYLGTGYCLLLPFFSMSID---------------VGKIISSEIVDCW 325
            R++  P       ++   + L+   F++SI+               VGKII  EI DC 
Sbjct: 160 RREYLKPIGNVWFYFIRYSFMLISYSFTISIERMLLLYAILTKNSTNVGKIIIKEINDCA 219

[Close]

BLAST of Lag0018177.1 vs. ExPASy TrEMBL
Match: A0A6A2ZUE4 (Uncharacterized protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00110733pilonHSYRG00282 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 8.9e-08
Identity = 54/182 (29.67%), Postives = 74/182 (40.66%), Query Frame = 0


Query: 184 QEPEPVNANIVREFYANLEVKNDFEVIVRGVPVQWSPEAINEMFDLQ-------DFRMPV 243
           + P PVNA IV+EFY+N+   N   V+VRG+ ++++P AIN  F LQ        F   V
Sbjct: 66  KHPVPVNATIVKEFYSNITEPNQHAVMVRGISIRFTPTAINRYFKLQVADDHNTSFAQEV 125

Query: 244 K-------------PTLRW------------------ASLGSACCRQHTTPRYLGTGY-- 303
                         P  RW                    L +   +    P    T    
Sbjct: 126 DHETYQGILEDLCLPGTRWNGQQLKRKTVDRDRLLPHVKLWNHFMKHKLMPTSHNTTVSC 185

Query: 304 --CLLLP--FFSMSIDVGKIISSEIVDCWKKKVGKLFFPNAITMLCSRRSLRESLTHLIW 322
              LLL       +ID+GKII      C K++   L FPN IT LC ++ +RE +   I 
Sbjct: 186 QRMLLLHSILTGRTIDIGKIIVEHAHLCLKRQASALVFPNLITALCRKKKVREEMFDEIL 245

[Close]

BLAST of Lag0018177.1 vs. ExPASy TrEMBL
Match: A0A6A2YMQ9 (Uncharacterized protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00111372pilonHSYRG00020 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.5e-07
Identity = 52/174 (29.89%), Postives = 71/174 (40.80%), Query Frame = 0


Query: 184 QEPEPVNANIVREFYANLEVKNDFEVIVRGVPVQWSPEAINEMFDLQD-------FRMPV 243
           + P  VNA++V+EFYAN+   N   + VRG  + ++P AI   F LQD       F    
Sbjct: 68  RHPGSVNASVVKEFYANISKPNQHSIFVRGKQIHFTPSAIIRYFHLQDVVDNHAKFEEEA 127

Query: 244 KPTLRWASLGSACC----------------RQHTTPR-----------YLGTGY------ 303
                   L   C                 R+   PR            + T Y      
Sbjct: 128 DSNTYDRVLEDLCFENTEWNGRQTSRYSVNRERLQPRAKLWNHFLKHKLMPTSYNTTVSL 187

Query: 304 --CLLLPFF--SMSIDVGKIISSEIVDCWKKKVGKLFFPNAITMLCSRRSLRES 314
              LLL     S  IDVG+II  ++ DC  KK   L FPN IT LC ++ ++E+
Sbjct: 188 SRLLLLHSIKESCPIDVGRIIVQQVNDCLGKKASALVFPNLITALCRKKKVKEN 241

The following BLAST results are available for this feature:

BLAST of Lag0018177.1 vs. NCBI nr


Match Name	E-value	Identity	Description
PON78020.1	1.7e-13	31.78	hypothetical protein PanWU01x14_023740 [Parasponia andersonii]	[more]
PON46472.1	5.5e-12	29.86	hypothetical protein PanWU01x14_251180, partial [Parasponia andersonii]	[more]
TYH01644.1	3.7e-08	27.78	hypothetical protein ES288_A09G075900v1 [Gossypium darwinii]	[more]
KAE8695166.1	1.8e-07	29.67	hypothetical protein F3Y22_tig00110733pilonHSYRG00282 [Hibiscus syriacus]	[more]
KAE8680640.1	3.1e-07	29.89	hypothetical protein F3Y22_tig00111372pilonHSYRG00020 [Hibiscus syriacus]	[more]

BLAST of Lag0018177.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Lag0018177.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2P5DXM3	8.3e-14	31.78	Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_023740 PE...	[more]
A0A2P5BCG4	2.7e-12	29.86	Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x1...	[more]
A0A5D2F6I2	1.8e-08	27.78	Uncharacterized protein OS=Gossypium darwinii OX=34276 GN=ES288_A09G075900v1 PE=...	[more]
A0A6A2ZUE4	8.9e-08	29.67	Uncharacterized protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00110733pilon...	[more]
A0A6A2YMQ9	1.5e-07	29.89	Uncharacterized protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00111372pilon...	[more]

BLAST of Lag0018177.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 336..356
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 85..109
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..160
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 143..160
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..51

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lag0018177	Lag0018177	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lag0018177.1.exon4	Lag0018177.1.exon4	exon
Lag0018177.1.exon3	Lag0018177.1.exon3	exon
Lag0018177.1.exon2	Lag0018177.1.exon2	exon
Lag0018177.1.exon1	Lag0018177.1.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.Lag0018177.1	cds.Lag0018177.1_4	CDS
cds.Lag0018177.1	cds.Lag0018177.1_3	CDS
cds.Lag0018177.1	cds.Lag0018177.1_2	CDS
cds.Lag0018177.1	cds.Lag0018177.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lag0018177.1	Lag0018177.1-protein	polypeptide