Lag0017892.1 (mRNA) Sponge gourd (AG‐4) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGATGTTTGCAGTATTCCTCTTGGGCGGGCAGCGGCGGTTGACTTGTGGTTCTGGCATTATGAGAAGAATGGGTGCTATAGCGTGCGTAGTGGTTACAAGTTGTGTATGTTGTTGCGCGGCTCAACTTCTTCAGCTTCCTCTCACGATTCTCGCTAGTGGTGGTCTGTTTTGTGGAAGTTGCCCTTGTCGCCTAAAGTCAAGGTGTTTATGTGGCGGGCTTTCCATTCTCTTCTTCCTGTTATGACGTCGCTGCTTCAACGCGGTATGGATGTTTCTCCTCTATGTTCTTTGTGTACTGATAGTTATGAATCCACAGACCACCCGCTGGTGGGTTGTGAGCGAGCTTTGCTTTTTTGGAAACGTGTGTTGCCGGCGGTTCACTGGGAGGCTGACTTTGGCCAAAGTTTTCTAGATCGGTGTTTGTTTTTGTTTTCCACCCTCTCTGATCGTGATCTTATAATGTGGTGTGTGGGTTGTTGGGCCTTATGGAATGATAGGAATACAGTTCGAGTTGGGCGAAAAATCTCAGATTTGATAGCGAAATGTAATTGGGTTGAAGCATACATTGACTCTTTCCGACTTGTTCGTGCATCATGTCGATCGGGGGCTTCGTCTGTGGGGGTTGTTTCGCCAGTTCCCCATTGGATTCGGCCGCCGGTGGGCTATGTTAAGCTGAACGTGGATGCTTCTGTTTCTATGGATCGACGACAATCAGGCATTGGGGTTCTTGTTCGTGATTGCTACGGTTCTGTGGTGGCTGCTATGGTTAACTCTTTTGCGGTATCTTATTCTCCCTTCAATGTTGAAGCTTTGGCAGTATTGGAGGGGTTGTATTTGGCTCTGCGACTCAACCTATCCTTGATTATTGTTGAGTCGGATTGCAAGGAGCTGGTCGACATGTTGAATGGGGTCACCTCCACTTTGTTTGAGGTCGGTATTTGGCCGGTCACAGATATTCAGTCTTTGGTTCCTAAGTTTGATTGTATTTCCTTCTCTCACGTGGGGCGTGGGTGTAATGTGCCTGCCCATTGTCTTGCGAGGAGGGGACTGTCTATTGGCTCTATTCTTTGGCTTGCTGAATTTCCAGCTTGGTCGCTGAGTATTCTCAAGGTTGATAATGCCTTGGTTGTATCTGGCCCATGTGGTCTTTCTTAA ATGATGTTTGCAGTATTCCTCTTGGGCGGGCAGCGGCGGTTGACTTGTGGTTCTGGCATTATGAGAAGAATGGGTGCTATAGCGTGCGTAGTGGTTACAAGTTGTGTATGTTGTTGCGCGGCTCAACTTCTTCAGCTTCCTCTCACGATTCTCGCTAGTGGTGGTCTGTTTTGTGGAAGTTGCCCTTGTCGCCTAAAGTCAAGTTATGAATCCACAGACCACCCGCTGGTGGGTTGTGAGCGAGCTTTGCTTTTTTGGAAACGTGTGTTGCCGGCGGTTCACTGGGAGGCTGACTTTGGCCAAAGTTTTCTAGATCGGTGTTTGTTTTTGTTTTCCACCCTCTCTGATCGTGATCTTATAATGTGGTGTGTGGGTTGTTGGGCCTTATGGAATGATAGGAATACAGTTCGAGTTGGGCGAAAAATCTCAGATTTGATAGCGAAATGTAATTGGGTTGAAGCATACATTGACTCTTTCCGACTTGTTCGTGCATCATGTCGATCGGGGGCTTCGTCTGTGGGGGTTGTTTCGCCAGTTCCCCATTGGATTCGGCCGCCGGTGGGCTATGTTAAGCTGAACGTGGATGCTTCTGTTTCTATGGATCGACGACAATCAGGCATTGGGGTTCTTGTTCGTGATTGCTACGGTTCTGTGGTGGCTGCTATGGTTAACTCTTTTGCGGTATCTTATTCTCCCTTCAATGTTGAAGCTTTGGCAGTATTGGAGGGGTTGTATTTGGCTCTGCGACTCAACCTATCCTTGATTATTGTTGAGTCGGATTGCAAGGAGCTGGTCGACATGTTGAATGGGGTCACCTCCACTTTGTTTGAGGTCGGTATTTGGCCGGTCACAGATATTCAGTCTTTGGTTCCTAAGTTTGATTGTATTTCCTTCTCTCACGTGGGGCGTGGGTGTAATGTGCCTGCCCATTGTCTTGCGAGGAGGGGACTGTCTATTGGCTCTATTCTTTGGCTTGCTGAATTTCCAGCTTGGTCGCTGAGTATTCTCAAGGTTGATAATGCCTTGGTTGTATCTGGCCCATGTGGTCTTTCTTAA ATGATGTTTGCAGTATTCCTCTTGGGCGGGCAGCGGCGGTTGACTTGTGGTTCTGGCATTATGAGAAGAATGGGTGCTATAGCGTGCGTAGTGGTTACAAGTTGTGTATGTTGTTGCGCGGCTCAACTTCTTCAGCTTCCTCTCACGATTCTCGCTAGTGGTGGTCTGTTTTGTGGAAGTTGCCCTTGTCGCCTAAAGTCAAGTTATGAATCCACAGACCACCCGCTGGTGGGTTGTGAGCGAGCTTTGCTTTTTTGGAAACGTGTGTTGCCGGCGGTTCACTGGGAGGCTGACTTTGGCCAAAGTTTTCTAGATCGGTGTTTGTTTTTGTTTTCCACCCTCTCTGATCGTGATCTTATAATGTGGTGTGTGGGTTGTTGGGCCTTATGGAATGATAGGAATACAGTTCGAGTTGGGCGAAAAATCTCAGATTTGATAGCGAAATGTAATTGGGTTGAAGCATACATTGACTCTTTCCGACTTGTTCGTGCATCATGTCGATCGGGGGCTTCGTCTGTGGGGGTTGTTTCGCCAGTTCCCCATTGGATTCGGCCGCCGGTGGGCTATGTTAAGCTGAACGTGGATGCTTCTGTTTCTATGGATCGACGACAATCAGGCATTGGGGTTCTTGTTCGTGATTGCTACGGTTCTGTGGTGGCTGCTATGGTTAACTCTTTTGCGGTATCTTATTCTCCCTTCAATGTTGAAGCTTTGGCAGTATTGGAGGGGTTGTATTTGGCTCTGCGACTCAACCTATCCTTGATTATTGTTGAGTCGGATTGCAAGGAGCTGGTCGACATGTTGAATGGGGTCACCTCCACTTTGTTTGAGGTCGGTATTTGGCCGGTCACAGATATTCAGTCTTTGGTTCCTAAGTTTGATTGTATTTCCTTCTCTCACGTGGGGCGTGGGTGTAATGTGCCTGCCCATTGTCTTGCGAGGAGGGGACTGTCTATTGGCTCTATTCTTTGGCTTGCTGAATTTCCAGCTTGGTCGCTGAGTATTCTCAAGGTTGATAATGCCTTGGTTGTATCTGGCCCATGTGGTCTTTCTTAA MMFAVFLLGGQRRLTCGSGIMRRMGAIACVVVTSCVCCCAAQLLQLPLTILASGGLFCGSCPCRLKSSYESTDHPLVGCERALLFWKRVLPAVHWEADFGQSFLDRCLFLFSTLSDRDLIMWCVGCWALWNDRNTVRVGRKISDLIAKCNWVEAYIDSFRLVRASCRSGASSVGVVSPVPHWIRPPVGYVKLNVDASVSMDRRQSGIGVLVRDCYGSVVAAMVNSFAVSYSPFNVEALAVLEGLYLALRLNLSLIIVESDCKELVDMLNGVTSTLFEVGIWPVTDIQSLVPKFDCISFSHVGRGCNVPAHCLARRGLSIGSILWLAEFPAWSLSILKVDNALVVSGPCGLS Homology
BLAST of Lag0017892.1 vs. NCBI nr
Match: XP_024046732.1 (uncharacterized protein LOC112101057 [Citrus clementina]) HSP 1 Score: 138.3 bits (347), Expect = 1.3e-28 Identity = 87/268 (32.46%), Postives = 139/268 (51.87%), Query Frame = 0
BLAST of Lag0017892.1 vs. NCBI nr
Match: XP_024950112.1 (uncharacterized protein LOC112496847 [Citrus sinensis]) HSP 1 Score: 134.4 bits (337), Expect = 1.9e-27 Identity = 88/278 (31.65%), Postives = 137/278 (49.28%), Query Frame = 0
BLAST of Lag0017892.1 vs. NCBI nr
Match: XP_024033146.1 (uncharacterized protein LOC112095446 [Citrus clementina]) HSP 1 Score: 133.3 bits (334), Expect = 4.2e-27 Identity = 83/255 (32.55%), Postives = 136/255 (53.33%), Query Frame = 0
BLAST of Lag0017892.1 vs. NCBI nr
Match: XP_015385025.1 (uncharacterized protein LOC107176703 [Citrus sinensis]) HSP 1 Score: 132.1 bits (331), Expect = 9.3e-27 Identity = 82/255 (32.16%), Postives = 136/255 (53.33%), Query Frame = 0
BLAST of Lag0017892.1 vs. NCBI nr
Match: XP_024953934.1 (uncharacterized protein LOC112498177 [Citrus sinensis]) HSP 1 Score: 130.6 bits (327), Expect = 2.7e-26 Identity = 94/276 (34.06%), Postives = 138/276 (50.00%), Query Frame = 0
BLAST of Lag0017892.1 vs. ExPASy TrEMBL
Match: A0A803NGI9 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1) HSP 1 Score: 136.0 bits (341), Expect = 3.1e-28 Identity = 90/289 (31.14%), Postives = 145/289 (50.17%), Query Frame = 0
BLAST of Lag0017892.1 vs. ExPASy TrEMBL
Match: A0A6J1DX30 (uncharacterized protein LOC111024874 OS=Momordica charantia OX=3673 GN=LOC111024874 PE=4 SV=1) HSP 1 Score: 127.9 bits (320), Expect = 8.5e-26 Identity = 86/273 (31.50%), Postives = 129/273 (47.25%), Query Frame = 0
BLAST of Lag0017892.1 vs. ExPASy TrEMBL
Match: A0A803PIB6 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1) HSP 1 Score: 127.1 bits (318), Expect = 1.4e-25 Identity = 90/286 (31.47%), Postives = 137/286 (47.90%), Query Frame = 0
BLAST of Lag0017892.1 vs. ExPASy TrEMBL
Match: A0A1S8ACU2 (Ribonuclease H-like superfamily protein OS=Citrus limon OX=2708 PE=4 SV=1) HSP 1 Score: 126.7 bits (317), Expect = 1.9e-25 Identity = 82/276 (29.71%), Postives = 134/276 (48.55%), Query Frame = 0
BLAST of Lag0017892.1 vs. ExPASy TrEMBL
Match: A0A803QH76 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1) HSP 1 Score: 126.3 bits (316), Expect = 2.5e-25 Identity = 91/310 (29.35%), Postives = 139/310 (44.84%), Query Frame = 0
BLAST of Lag0017892.1 vs. TAIR 10
Match: AT3G09510.1 (Ribonuclease H-like superfamily protein ) HSP 1 Score: 78.2 bits (191), Expect = 1.5e-14 Identity = 70/274 (25.55%), Postives = 122/274 (44.53%), Query Frame = 0
BLAST of Lag0017892.1 vs. TAIR 10
Match: AT2G33160.1 (glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein ) HSP 1 Score: 57.0 bits (136), Expect = 3.5e-08 Identity = 53/199 (26.63%), Postives = 75/199 (37.69%), Query Frame = 0
BLAST of Lag0017892.1 vs. TAIR 10
Match: AT2G04420.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein ) HSP 1 Score: 53.1 bits (126), Expect = 5.1e-07 Identity = 49/203 (24.14%), Postives = 80/203 (39.41%), Query Frame = 0
BLAST of Lag0017892.1 vs. TAIR 10
Match: AT1G10000.1 (Ribonuclease H-like superfamily protein ) HSP 1 Score: 51.2 bits (121), Expect = 1.9e-06 Identity = 67/274 (24.45%), Postives = 104/274 (37.96%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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