Lag0017763.1 (mRNA) Sponge gourd (AG‐4) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGCCTCCGTTTAACCCTTCTACTACAGATACTTCGGCTCAACTTAGCTCTTCCTCTCATTTGGATGAAGCTTGGTTCATGGATTCTGGGGCTACTCATGACATGACCTCTGATGTTAGCCATCTTCAGCAGACCTCTCCTTACTTTGGCAATAAGCAAGTGGTAATCGGCAATGGTACGCCTATCCCTGTCCTCAATCTTGGTTCTACTTCCTTACCTTCTTCTTTGCCTTTTCATTCTGTCAAACTTAAATATGTGTTACATGCTCCACATATTTCACATAATCTTATTAGTATTGCCAAACTTTGTTTTGATAACAATGTGTTTTCCCTTGTTGGTAACATGTCTCCTCCAAAACGTATCTCTTAA ATGCCTCCGTTTAACCCTTCTACTACAGATACTTCGGCTCAACTTAGCTCTTCCTCTCATTTGGATGAAGCTTGGTTCATGGATTCTGGGGCTACTCATGACATGACCTCTGATGTTAGCCATCTTCAGCAGACCTCTCCTTACTTTGGCAATAAGCAAGTGGTAATCGGCAATGGTACGCCTATCCCTGTCCTCAATCTTGGTTCTACTTCCTTACCTTCTTCTTTGCCTTTTCATTCTGTCAAACTTAAATATGTGTTACATGCTCCACATATTTCACATAATCTTATTAGTATTGCCAAACTTTGTTTTGATAACAATGTGTTTTCCCTTGTTGGTAACATGTCTCCTCCAAAACGTATCTCTTAA ATGCCTCCGTTTAACCCTTCTACTACAGATACTTCGGCTCAACTTAGCTCTTCCTCTCATTTGGATGAAGCTTGGTTCATGGATTCTGGGGCTACTCATGACATGACCTCTGATGTTAGCCATCTTCAGCAGACCTCTCCTTACTTTGGCAATAAGCAAGTGGTAATCGGCAATGGTACGCCTATCCCTGTCCTCAATCTTGGTTCTACTTCCTTACCTTCTTCTTTGCCTTTTCATTCTGTCAAACTTAAATATGTGTTACATGCTCCACATATTTCACATAATCTTATTAGTATTGCCAAACTTTGTTTTGATAACAATGTGTTTTCCCTTGTTGGTAACATGTCTCCTCCAAAACGTATCTCTTAA MPPFNPSTTDTSAQLSSSSHLDEAWFMDSGATHDMTSDVSHLQQTSPYFGNKQVVIGNGTPIPVLNLGSTSLPSSLPFHSVKLKYVLHAPHISHNLISIAKLCFDNNVFSLVGNMSPPKRIS Homology
BLAST of Lag0017763.1 vs. NCBI nr
Match: RVX03327.1 (Retrovirus-related Pol polyprotein from transposon RE2 [Vitis vinifera]) HSP 1 Score: 92.8 bits (229), Expect = 2.2e-15 Identity = 46/92 (50.00%), Postives = 63/92 (68.48%), Query Frame = 0
BLAST of Lag0017763.1 vs. NCBI nr
Match: RVX09873.1 (Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera]) HSP 1 Score: 92.4 bits (228), Expect = 2.8e-15 Identity = 45/91 (49.45%), Postives = 62/91 (68.13%), Query Frame = 0
BLAST of Lag0017763.1 vs. NCBI nr
Match: RVX09940.1 (Retrovirus-related Pol polyprotein from transposon RE2 [Vitis vinifera]) HSP 1 Score: 91.7 bits (226), Expect = 4.8e-15 Identity = 48/103 (46.60%), Postives = 64/103 (62.14%), Query Frame = 0
BLAST of Lag0017763.1 vs. NCBI nr
Match: RVW60941.1 (Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera]) HSP 1 Score: 91.3 bits (225), Expect = 6.3e-15 Identity = 46/92 (50.00%), Postives = 61/92 (66.30%), Query Frame = 0
BLAST of Lag0017763.1 vs. NCBI nr
Match: PKU84201.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Dendrobium catenatum]) HSP 1 Score: 90.9 bits (224), Expect = 8.3e-15 Identity = 44/104 (42.31%), Postives = 63/104 (60.58%), Query Frame = 0
BLAST of Lag0017763.1 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1) HSP 1 Score: 75.5 bits (184), Expect = 4.7e-13 Identity = 43/106 (40.57%), Postives = 63/106 (59.43%), Query Frame = 0
BLAST of Lag0017763.1 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1) HSP 1 Score: 70.9 bits (172), Expect = 1.2e-11 Identity = 41/106 (38.68%), Postives = 59/106 (55.66%), Query Frame = 0
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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