Lag0017701.1 (mRNA) Sponge gourd (AG‐4) v1

Overview


Name	Lag0017701.1
Type	mRNA
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Unknown protein
Location	chr5: 7179412 .. 7179966 (+)
Sequence length	462
RNA-Seq Expression	Lag0017701.1
Synteny	Lag0017701.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGGGATTGGAGATCAATGTGGGGAGCATTATCAGGGATGAGATTTTAGCTTGTGGGAGAAAGAGAGCAGGCAAGCTTTTCTTTGGATCACTCATCACCCAGCTTTGCCAAAGGGTGAAGATAGTGTCGGGCAAGGACGAGGAGCGTCACTTCTTCAAGCCGACCATCGACCTGTCCTTGATCGGGATGCTCCAGCAGAACAGTATCTAGGGGAAAGACAAAGCCTCCACATCTCAGGTTACTCCTCAATCAGGGCCGAATATAGCTTCTCCATCCCAGCACACTCCTTTCACAGGGCCTTCACCATCATCAGAAGCCCTAGGCATGGTCTACCGCCAGTTAGATCAAATCAGGGAGAACCTGAAGACGTACTGGGTATATGCAAAGGAGGGGGATGAAGTTATTAGAGAGTTCTATCTCTCTATCGCCTCGAGTATCGCTCCAGGCTTTCTAAATTTCCCTCAGTCACTGCTGCCCCAGGAAGAAGAGGATTCTGATGAAGAGGAAGATGAAGAGAATGAAGAGAAAGAGAGTTCCTCAGACGAGGAATAG

mRNA sequence

ATGAAGGGATTGGAGATCAATGTGGGGAGCATTATCAGGGATGAGATTTTAGCTTGTGGGAGAAAGAGAGCAGGCAAGCTTTTCTTTGGATCACTCATCACCCAGCTTTGCCAAAGGGTGAAGATAGTGTCGGGCAAGGACGAGGAGCGTCACTTCTTCAAGCCGACCATCGACCTGTCCTTGATCGGGATGCTCCAGCAGAACAGGCCTTCACCATCATCAGAAGCCCTAGGCATGGTCTACCGCCAGTTAGATCAAATCAGGGAGAACCTGAAGACGTACTGGGTATATGCAAAGGAGGGGGATGAAGTTATTAGAGAGTTCTATCTCTCTATCGCCTCGAGTATCGCTCCAGGCTTTCTAAATTTCCCTCAGTCACTGCTGCCCCAGGAAGAAGAGGATTCTGATGAAGAGGAAGATGAAGAGAATGAAGAGAAAGAGAGTTCCTCAGACGAGGAATAG

Coding sequence (CDS)

ATGAAGGGATTGGAGATCAATGTGGGGAGCATTATCAGGGATGAGATTTTAGCTTGTGGGAGAAAGAGAGCAGGCAAGCTTTTCTTTGGATCACTCATCACCCAGCTTTGCCAAAGGGTGAAGATAGTGTCGGGCAAGGACGAGGAGCGTCACTTCTTCAAGCCGACCATCGACCTGTCCTTGATCGGGATGCTCCAGCAGAACAGGCCTTCACCATCATCAGAAGCCCTAGGCATGGTCTACCGCCAGTTAGATCAAATCAGGGAGAACCTGAAGACGTACTGGGTATATGCAAAGGAGGGGGATGAAGTTATTAGAGAGTTCTATCTCTCTATCGCCTCGAGTATCGCTCCAGGCTTTCTAAATTTCCCTCAGTCACTGCTGCCCCAGGAAGAAGAGGATTCTGATGAAGAGGAAGATGAAGAGAATGAAGAGAAAGAGAGTTCCTCAGACGAGGAATAG

Protein sequence

MKGLEINVGSIIRDEILACGRKRAGKLFFGSLITQLCQRVKIVSGKDEERHFFKPTIDLSLIGMLQQNRPSPSSEALGMVYRQLDQIRENLKTYWVYAKEGDEVIREFYLSIASSIAPGFLNFPQSLLPQEEEDSDEEEDEENEEKESSSDEE

Homology

[Close]

BLAST of Lag0017701.1 vs. NCBI nr
Match: PON59596.1 (hypothetical protein PanWU01x14_158080 [Parasponia andersonii])

HSP 1 Score: 60.8 bits (146), Expect = 1.1e-05
Identity = 52/184 (28.26%), Postives = 82/184 (44.57%), Query Frame = 0


Query: 1   MKGLEINVGSIIRDEILACGRKRAGKLFFGSLITQLCQRVKIVSGKDEERHFFKPTIDLS 60
           + G  INVG +I  EI AC  +++G LFF SLITQLC+  +     +EE+      ID  
Sbjct: 77  LTGKSINVGRMIHSEIRACAARKSGALFFPSLITQLCRNARAPFLVNEEKLHITGEIDAI 136

Query: 61  LIGMLQQ------------NRP--SPSSEALGMVYRQLDQIRENL--------------- 120
            +  + Q            +RP  + SS A G + +QL  + + L               
Sbjct: 137 AVARITQEGQTELTQQPSTSRPTVASSSRANGDILQQLKALEQRLSQQEVQQYHMMSLLQ 196

Query: 121 ------KTYWVYAKEGDEVIREFYLSIASSIAPGFLNFPQSLLP--QEEEDSDEEEDEEN 148
                 + +W Y+KE D  +++   +  +   P F  FPQ LL     E +++ ++D  N
Sbjct: 197 HTHKQQQQFWAYSKERDTALKKALQNNFTRPIPTFPTFPQELLQDLDYEYEAESDKDGSN 256

[Close]

BLAST of Lag0017701.1 vs. NCBI nr
Match: KAF4375842.1 (hypothetical protein G4B88_026421 [Cannabis sativa])

HSP 1 Score: 57.4 bits (137), Expect = 1.3e-04
Identity = 35/111 (31.53%), Postives = 50/111 (45.05%), Query Frame = 0


Query: 1    MKGLEINVGSIIRDEILACGRKRAGKLFFGSLITQLCQRVKIVSGKDEERHFFKPTIDLS 60
            +KG +INVG +I  EI  C  +  GKLFF  LIT+ C+   +    DE+    K  +   
Sbjct: 906  VKGKKINVGKVIAKEIFECAHRVKGKLFFSCLITEKCRCANVPMLNDEDPVPRKGVVSFE 965

Query: 61   LIGMLQQNRPS---------PSSEALGMVYRQLDQIRENLKTYWVYAKEGD 103
                 ++  PS         P  E L        Q+ E L+T+W Y +E D
Sbjct: 966  PDRAPKRTTPSTTTASTSRDPMDERLSKHEALQQQMCERLQTHWNYERERD 1016

[Close]

BLAST of Lag0017701.1 vs. NCBI nr
Match: PON46472.1 (hypothetical protein PanWU01x14_251180, partial [Parasponia andersonii])

HSP 1 Score: 55.1 bits (131), Expect = 6.3e-04
Identity = 47/182 (25.82%), Postives = 78/182 (42.86%), Query Frame = 0


Query: 3   GLEINVGSIIRDEILACGRKRAGKLFFGSLITQLCQRVKIVSGKDEERHFFKPTIDLSLI 62
           G  INVG +I  EI AC  ++ G LFF SLIT+LC+  +     +EE+      ID   +
Sbjct: 208 GKSINVGRMIHSEIRACAARKTGALFFPSLITRLCRNARAPFLVNEEKLHNTGEIDAIAV 267

Query: 63  GMLQQNRPSPSSE--------------ALGMVYRQLDQIRENL----------------- 122
             + Q  P+ S++                G + +QL  + + L                 
Sbjct: 268 ARIAQEGPTESTQQPSSSRPATASSNRTNGDILQQLKALEQRLSQQEVQQYHMMSLLQHT 327

Query: 123 ----KTYWVYAKEGDEVIREFYLSIASSIAPGFLNFPQSLLP--QEEEDSDEEEDEENEE 148
               + +W Y+KE D  +++   +  +   P F  FPQ +L     E +++ ++D  NE 
Sbjct: 328 HKQQQQFWAYSKERDTALKKALQNNFTRPMPTFPAFPQEILKDLDYEYEAESDKDGSNEA 387

The following BLAST results are available for this feature:

BLAST of Lag0017701.1 vs. NCBI nr


Match Name	E-value	Identity	Description
PON59596.1	1.1e-05	28.26	hypothetical protein PanWU01x14_158080 [Parasponia andersonii]	[more]
KAF4375842.1	1.3e-04	31.53	hypothetical protein G4B88_026421 [Cannabis sativa]	[more]
PON46472.1	6.3e-04	25.82	hypothetical protein PanWU01x14_251180, partial [Parasponia andersonii]	[more]

BLAST of Lag0017701.1 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 139..153
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 126..153
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 130..153

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lag0017701	Lag0017701	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lag0017701.1.exon1	Lag0017701.1.exon1	exon
Lag0017701.1.exon2	Lag0017701.1.exon2	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.Lag0017701.1	cds.Lag0017701.1	CDS
cds.Lag0017701.1	cds.Lag0017701.1_2	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lag0017701.1	Lag0017701.1-protein	polypeptide