Lag0017695.1 (mRNA) Sponge gourd (AG‐4) v1

Overview
NameLag0017695.1
TypemRNA
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionGag/pol protein
Locationchr5: 6999297 .. 7004828 (-)
Sequence length1110
RNA-Seq ExpressionLag0017695.1
SyntenyLag0017695.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTTACCGCTAAGGAGATCATGGACTCACTGCAGGAAATGTTTGGACAACTGTCCTCACAAGTTTGGCATGATGCCCTCAAGTTCATCTATAACTCACGCATGAAGGAGGGGACATCTGTGCAAGAACCCATTCTTAATCTGATGGTTCACTTCAACGTGACGGAGATGAGCGGTGTCGTCATTGATGAGCAAAGTCAGGTAAGCTTTATCATGGAGTCTCTTCCGAAGAGTTTCCTATAGTTTCGTAGCAATGTTGTGATGAACAAGATAGAGTATAACCTGACTACTCTGTTGAATGAGCTATAGACATATCGTTCTCTGGTAACACTCATTTATGTGCATTATTTAGTCTTAAAAACTTAGGTTATTACTAGGAAAACAAGGACTTTGTGCTTAAAATCATATCCTTTTTAGTCAATTTAGCAAAGGTCTTAGAATCATGTTGAAAATCTTAGAAATATTGAATTTATGTTTAAAATGTCCAAAAAGAGATTACTTTTGCAAGAATTTATCCAAGTTAAATATTTTTGTGCAGAGGACTTTGCAGTAGAAATGTGCCTGCAATTGGAGAGAAAGAGTTAGCGGAGCAAAACAATTAAAGTTGAAGATTTGCGTCCACATCTAGTTCTGAGGATGTGGAGTTTGCATTTGAATGGCGCCCGCAAACCAATAAGGAAAGTAGCCCTAGTGAAGACAGAATTGTCAAGGTAGTGCACAGAAGATTTGCGCCCAACTTTGCAGCCACAACTGGCTTTCCGACATAAATCTGAGATTCGCAGGATCTTCACAAAATCATTCGAAAATTCCAAATCTTGTATCAAATCTCCAAGGATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGGATTTTTACCTTCAAGGGTCTTATCACACTGATCTAGGCAGCCAACCCTACCTTCCAAGGTCTATAAAAGACGACCAAGGTGCAAGAAGCAAAGAGAACTCGAAATTTCATCCTTGGGATAGTTTTTCAGTTTTTCTTTCTTATCATCTTGTAACCACTCCAAGTTCCGTATCTTCCAGCCTCTGTTGGCTCTTCCATTCGAAAGAAGAAGATGAGAAAGGCTTGTCTCACCTTGAAAAATGTTAAAGCAAGCTAGATAGAGAGGGGAAAGATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTTAGTTGAGTCTTGAGTTTTACTTTTGTTTAGTTTATTTTGTAAATTATTGTATCTTTTTGTTTCTATTTACTTTTCAGTTGTAAGTTCTTATTTCATGTACTCTTTTTATTATTAATATAAATTCAAGTTATTCTTTTACTTTGTAAATTTTTACTTTATGTCTTGCATTTTAATTTCTTCAATGAGCTAAGCTTCTTCTTGGGGGTTCAAATATGTGGATACCTTGAGTAGAAGAAAACTCCACCGATGCAAAGGTAACCTTGCTTCCTTTTAACATTGTTTGTTTTTTATGAAAGTTTAAGTTTCATTGTTAGCTTAAAATGATCGCTTAAGTTAGCATAGTTTGTGTTTAGTTGGTGGCCGAAAGGTTGGAGTTAACGTATCCTAGAAATAGGACTTTGTTTTCTTGCATCCTAGAAATAGGACTGGAACCACTAGAGTTTCGAGAGTCGTATGCAATAATTATCAAAGTTCATGTAGCCCTAGAAATAGATGTCTAGTTGGCTTAGTCTTCTAAAGGCACCTACAAAAAGCTAAATAGGAGTATAACTTAACTCACAATCTAGTTGTCAGGGTATTTGCGGGCGCAAACTGGAGCAATTTGTTTGCACCATGTCTATGTGGGCACTATAGATAATATTCTCCAGTCTCTGCAATGCCTGAGTGAGTTTCCAACACAAAGGTGGACGCATTTTAATGCTTTTGGTTGATGCTTATTTGAATTCCCCACTTATCTCATAGATCTTTAATCGCTTTCATTTACTTGCTTGTTTTATTTTTTGTCTTCAATCACAAAAACCCCAATCAAATTATTTCTTTGGTTACCATCCTCGGTTGTAAATTTAGAGGAGGTTCTTGTTTTACAGAATTGAGTGTTTTCCAACTATTCACCATCTCCCTTGGGTGAGATATCCAGAGTACTCTCTACTTTATTACTTGATAGTGTATATACTTGCACTCGAGCAGGGTGTTGCACTTGTAGCACACACACGTCAGTCTCTTATGAAGAATAAGAGACAAGAGAGAGAACCAAACATTGCCACCTCTAAGGGGTTCCACAGAGAATCTTCTTTTGGAATCAAATTTGTACCTTCATCTTCTAGGACTATGAGTTCCAAGAAGAAGAATAAGAGTGGGAAGGGGAAAAATAACGCTTCTGCTGCTGCTTGTAAGGGGAAAGCCAAAGTTGTAGATAAAGGAAAATGTTTCCACTGCAATGTGCATGGACATTGGAATAGAAATTGCCCCAAGTACCTGGCTGAGAATAAGAAAACCAAATAAGGTAAATATGATTTACTTGTAATTGAAACTTGTTTAATGATTGATGATTTTGCCTGAATACTAGATTCAGGGACCACTAACCATGTTTTTTCTTCTTTTTAGGGAATTAGTTCCTAGAGGCAGTTCGAAGCTGGTGAGATGACTCTTAAGGTCAAAACGAGAGAGGTTGTCTCAACTATTGCAGTGGGAGATTTTAAATTGTTTTTTAGGGATAGATTCATATTGTTAGATAGTGTATGTAATTCCTAGAGTTAAAAGTAACTTGATATCTGTCTCTTGTATACTTGAACAATTGTACTCAGTTTCTTTTAATATAAATGAACTATTCATTTTGAAATGAGGAGTTAATACAAATCAAAATATGTATCATGTACATATTAGCAATTGATAACTTGAAAATATCAAGTTATTAAGCGTCTAATTTAAGCTTATTGTGAGCCTCATGAGAGTGAAAATACCGTTGTTTTAACTAATTTATATGCTAGATGCAGTAAAATTGATTTTTTTGTATTAATGTGCTCATATTGATTATTATCTTTAAAATTCATACAAAACTGCACTAATTCTAATTTATTGTTGCATCAGGAAAAGCTTGGCCAAATATGCGCTAGAGCATGATGCGCTTGGGGCATGACATGTTGTAGCAGCTGGTGCATGGAAAGCTTGTTGTTGTACCAAGGGATGTTGTTGTTGTAGCAATGGAAGCTTGATGTTGGAGCAGCTGACGCATGGAAAGCATGTTGTTGTAGCAAGGGATGCTTGTTGCTATAGCAAGATGCATGATGATGCTACAACAAGTTTCTATCCATGAGATCATGCTTTGGCTCAAAGCAACACATGTTTTGGCTCCAAGCAAGAAAGGTTTATAAATAGGGGGAGATGAAGAATCAAAGGCATCCAGGGATCCAAGGATCCATAAGTCTTTCGTAGATTTTTTTTTTTTTTTTTGTATGTTGTAGCATGAACTAATTTCTTTTTATCAAGGCTTAGCTTAGGCTCCCAGGAGGCATTAAGATTATTTTTTGTATGCCAGCAATGAATCAATGATATTGATGCTTTCTACTTAGATGTGATAATTCTTTCATTACTAATATCCGTCTGATCAACCGATAGAGGTAGTAGCATGATAAATCCCAGAAGGGTAATGCATGTGGAAATATCTAAGTAGAGCAAGATAATGCATTACATGTAGTCTGGTTGTGTTAGGAATAACTCAACCGCTTAGGATATTTCATGAATGTGTTTGGGTTGCTTTAGGGATAATTCAACTGCTTGCAAGCATATAGAGAACTGATTAAATGCATGAATTAAGCAATAAGAATATTCTTAGTTCATCGCATGTGTAATACCGGAAGGGAATCACATGTTTATTTCTCGCTTAGGCATCAATATTCTGTCGATTCATTGTTATGTGCTACATTAATATCTTATATGTCGCATGTGGTTGTTGCGGCGAAAGTCTTGATAGCTCATCATCCATCATATCTTTCTATCGCATTATTATTGTTTTTCTTATCGCATGTTCAACCTGTCGCATCCATATTTTATTGCCCCAGCACAACATCATTAGAATATGATTTAATTTGAGATATTTTATGTACTCGCCCTTTCCCTGTGGATTCGACCCTAGAATACTCCAGGTATTACTTGGTAGTGCATAATTTATACTTGGATTAATGCACAACAATAACGATATATTCTTTAGTTAATTCAATATAAATTAGAAGTGATTAAATTCCCTATCAAGTTTCTGGCGCCGTTGTCGGGGAAGGCAACAATAGTTTAGAACGTCTTTTATTATTTCTTATTCTATGTATTGTGCTATTACAATCATCTTACTTGAGTGGGTCTTTTTCAGGTGTGTTAGGTGTATACCCAAGAAATGGCTGCACTAAACCACAAAATCCTCCCATTAATCCAATACAATTGGCTGATGATAGAGAACGAGGCATTAGAGACTATGCAGTCCCAAGGATGTGCAACTTCAACCCTGGAATTGTACGTCCTAAGCTTGACACTAAAAGGTTTGAACTTAAGCCTGTTATGTTTCAAATGCTTACTGCAGCAGGACAGTTTGGAGGAAGTGCATCAGAAGATCCTCACTCTCACCTCAAATCATTCCTCGACATTTGCAACAAGTTCATCATTCCAGGAGTTACCCCAAAACAACTTCAAGTCATATTATTTCCTTACTCGCTACGAAATGCTACTAAGGTATGGCTAAATCAACAACCTACGAATTCCATGCTACATGGAACGACTTGGCAGAAAAAGTTTTGGAGAAATATTTTCCACCAACAACAAATTCCAAATTGTGCAAGGAGATTATAATTTTCTCACAAGAAGAGGATGAGTCACTGAGCGATGCGAGGGAACGATTCAAAAATTTATTGCAAAGATGCCCCCATCATGGATTGCCTCACTGTATTCAATTGGAGACTATTGGGTTCCTAGAGTGAGTAATAATATGGTGTAAAAGACTCTAGAATTCCTGTGCAAGTATACACAGTCTGCAGCAAGTAATATTATCAATCCGAGTCCTGAATTAGTTTCCACTCTACCTATTTTGTGTAACTTTCTAATGGTTTCAAAGATGGTAAAATGATTTCGTTTTATAAGAATTATGTTGAGGCAAAATAAATGATAGAACAACAAGTAAAAAATAGATAGACAGATTAAAGACAGGCGCTGGTTAGGATTTAGTGATTGTTCTAAAAGATGCTCTAGCAATATTATTGATCATGCATTTCTCGCAGTATTATTAGCGGATTCCTCCCGGAACTCCTGATCTTTTGGGATGTGTTCCAACCCCAATGAAGTACTACCGATCAAGCACTAGGCAACTGGCTATCCCTAGCTCAGTCACTGGCGTTCACCAATATACAATGATCGTAGTGTGGATAATTGCCACACACTCTCTAAATCATCCCTGA

mRNA sequence

ATGCTTACCGCTAAGGAGATCATGGACTCACTGCAGGAAATGTTTGGACAACTGTCCTCACAAGTTTGGCATGATGCCCTCAAGTTCATCTATAACTCACGCATGAAGGAGGGGACATCTGTGCAAGAACCCATTCTTAATCTGATGGTTCACTTCAACGTGACGGAGATGAGCGGTGTCGTCATTGATGAGCAAAGTCAGGGTGTTGCACTTGTAGCACACACACGTCAGTCTCTTATGAAGAATAAGAGACAAGAGAGAGAACCAAACATTGCCACCTCTAAGGGGTTCCACAGAGAATCTTCTTTTGGAATCAAATTTGTACCTTCATCTTCTAGGACTATGAGTTCCAAGAAGAAGAATAAGAGTGGGAAGGGGAAAAATAACGCTTCTGCTGCTGCTTGTAAGGGGAAAGCCAAAGTTGTAGATAAAGGAAAATGTTTCCACTGCAATGTGCATGGACATTGGAATAGAAATTGCCCCAACAATGGAAGCTTGATGTTGGAGCAGCTGACGCATGGAAAGCATGTTGTTGTAGCAAGGGATGCTTGTTGCTATAGCAAGATGCATGATGATGCTACAACAAGTGTGTTAGGTGTATACCCAAGAAATGGCTGCACTAAACCACAAAATCCTCCCATTAATCCAATACAATTGGCTGATGATAGAGAACGAGGCATTAGAGACTATGCAGTCCCAAGGATGTGCAACTTCAACCCTGGAATTGTACGTCCTAAGCTTGACACTAAAAGGTTTGAACTTAAGCCTGTTATGTTTCAAATGCTTACTGCAGCAGGACAGTTTGGAGGAAGTGCATCAGAAGATCCTCACTCTCACCTCAAATCATTCCTCGACATTTGCAACAAGTTCATCATTCCAGGAGTTACCCCAAAACAACTTCAAGTCATATTATTTCCTTACTCGCTACGAAATGCTACTAAGCGGATTCCTCCCGGAACTCCTGATCTTTTGGGATGTGTTCCAACCCCAATGAAGTACTACCGATCAAGCACTAGGCAACTGGCTATCCCTAGCTCAGTCACTGGCGTTCACCAATATACAATGATCGTAGTGTGGATAATTGCCACACACTCTCTAAATCATCCCTGA

Coding sequence (CDS)

ATGCTTACCGCTAAGGAGATCATGGACTCACTGCAGGAAATGTTTGGACAACTGTCCTCACAAGTTTGGCATGATGCCCTCAAGTTCATCTATAACTCACGCATGAAGGAGGGGACATCTGTGCAAGAACCCATTCTTAATCTGATGGTTCACTTCAACGTGACGGAGATGAGCGGTGTCGTCATTGATGAGCAAAGTCAGGGTGTTGCACTTGTAGCACACACACGTCAGTCTCTTATGAAGAATAAGAGACAAGAGAGAGAACCAAACATTGCCACCTCTAAGGGGTTCCACAGAGAATCTTCTTTTGGAATCAAATTTGTACCTTCATCTTCTAGGACTATGAGTTCCAAGAAGAAGAATAAGAGTGGGAAGGGGAAAAATAACGCTTCTGCTGCTGCTTGTAAGGGGAAAGCCAAAGTTGTAGATAAAGGAAAATGTTTCCACTGCAATGTGCATGGACATTGGAATAGAAATTGCCCCAACAATGGAAGCTTGATGTTGGAGCAGCTGACGCATGGAAAGCATGTTGTTGTAGCAAGGGATGCTTGTTGCTATAGCAAGATGCATGATGATGCTACAACAAGTGTGTTAGGTGTATACCCAAGAAATGGCTGCACTAAACCACAAAATCCTCCCATTAATCCAATACAATTGGCTGATGATAGAGAACGAGGCATTAGAGACTATGCAGTCCCAAGGATGTGCAACTTCAACCCTGGAATTGTACGTCCTAAGCTTGACACTAAAAGGTTTGAACTTAAGCCTGTTATGTTTCAAATGCTTACTGCAGCAGGACAGTTTGGAGGAAGTGCATCAGAAGATCCTCACTCTCACCTCAAATCATTCCTCGACATTTGCAACAAGTTCATCATTCCAGGAGTTACCCCAAAACAACTTCAAGTCATATTATTTCCTTACTCGCTACGAAATGCTACTAAGCGGATTCCTCCCGGAACTCCTGATCTTTTGGGATGTGTTCCAACCCCAATGAAGTACTACCGATCAAGCACTAGGCAACTGGCTATCCCTAGCTCAGTCACTGGCGTTCACCAATATACAATGATCGTAGTGTGGATAATTGCCACACACTCTCTAAATCATCCCTGA

Protein sequence

MLTAKEIMDSLQEMFGQLSSQVWHDALKFIYNSRMKEGTSVQEPILNLMVHFNVTEMSGVVIDEQSQGVALVAHTRQSLMKNKRQEREPNIATSKGFHRESSFGIKFVPSSSRTMSSKKKNKSGKGKNNASAAACKGKAKVVDKGKCFHCNVHGHWNRNCPNNGSLMLEQLTHGKHVVVARDACCYSKMHDDATTSVLGVYPRNGCTKPQNPPINPIQLADDRERGIRDYAVPRMCNFNPGIVRPKLDTKRFELKPVMFQMLTAAGQFGGSASEDPHSHLKSFLDICNKFIIPGVTPKQLQVILFPYSLRNATKRIPPGTPDLLGCVPTPMKYYRSSTRQLAIPSSVTGVHQYTMIVVWIIATHSLNHP
Homology
[Close]
BLAST of Lag0017695.1 vs. NCBI nr
Match: KAA0037371.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 162.5 bits (410), Expect = 6.7e-36
Identity = 98/169 (57.99%), Postives = 115/169 (68.05%), Query Frame = 0 

Query: 1   MLTAKEIMDSLQEMFGQLSSQVWHDALKFIYNSRMKEGTSVQEPILNLMVHFNVTEMSGV 60
           MLTA+EIMDSLQEMFGQ S Q+ HDALK+IYN+RM EG SV+E +LN+M+HFNV EM   
Sbjct: 54  MLTAREIMDSLQEMFGQTSYQIKHDALKYIYNARMNEGASVREHVLNMMIHFNVAEMKEA 113

Query: 61  VIDEQSQGVALVA------HTRQSLMKNKRQEREPNIATS-KGFHRESSFGIKFVPSSSR 120
           VIDE SQ    +        T +SLMK K Q+ E N+ATS + FHR S+ G KF+PSSS 
Sbjct: 114 VIDEASQIAYTLTTLLNELQTFESLMKIKGQKGEANVATSTRKFHRGSNSGNKFMPSSSG 173

Query: 121 TMSSKKKNKSGKGKNNASAAACKGKAKVVD-KGKCFHCNVHGHWNRNCP 162
               KKK K G+G N A+ AA K   K  D KG CFHCN  GHW RNCP
Sbjct: 174 NKKWKKK-KGGQG-NKANLAAAKTSKKAKDAKGICFHCNQEGHWKRNCP 220

[Close]
BLAST of Lag0017695.1 vs. NCBI nr
Match: TYK28896.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 155.2 bits (391), Expect = 1.1e-33
Identity = 98/191 (51.31%), Postives = 115/191 (60.21%), Query Frame = 0 

Query: 1   MLTAKEIMDSLQEMFGQLSSQVWHDALKFIYNSRMKEGTSVQEPILNLMVHFNVTEMSGV 60
           MLTA+EIMDSLQEMFGQ S Q+ HDALK+IYN+RM EG SV+E +LN+MVHFNV EM+G 
Sbjct: 1   MLTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGA 60

Query: 61  VIDEQSQGVAL-------------------VAHTR----------QSLMKNKRQEREPNI 120
           VIDE SQ   +                   +A+T           +SLMK K Q+ E N+
Sbjct: 61  VIDEASQVSFILKSLPESFLQFRSNAVMNKIAYTLTTLLNELQNFESLMKIKGQKGEANV 120

Query: 121 ATS-KGFHRESSFGIKFVPSSSRTMSSKKKNKSGKGKNNASAAACKGKAKVVDKGKCFHC 162
           ATS + FHR S+ G K VPSSS     KKK      K N +AA    KAK   KG CFHC
Sbjct: 121 ATSTRKFHRGSTCGTKSVPSSSGNKKWKKKKGGQGNKANPAAAKTSKKAKAA-KGICFHC 180

[Close]
BLAST of Lag0017695.1 vs. NCBI nr
Match: KAA0044955.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 154.1 bits (388), Expect = 2.4e-33
Identity = 96/191 (50.26%), Postives = 113/191 (59.16%), Query Frame = 0 

Query: 1   MLTAKEIMDSLQEMFGQLSSQVWHDALKFIYNSRMKEGTSVQEPILNLMVHFNVTEMSGV 60
           MLTA+EIMDSLQEMFGQ S Q+ HDALK+IYN+RM EG SV+E +LN+MVHFNV EM+G 
Sbjct: 88  MLTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGA 147

Query: 61  VIDEQSQGVALV-----------------------------AHTRQSLMKNKRQEREPNI 120
           VIDE SQ   ++                               T +SLMK K Q+ E N+
Sbjct: 148 VIDEASQVSFILESLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQKGEANV 207

Query: 121 ATS-KGFHRESSFGIKFVPSSSRTMSSKKKNKSGKGKNNASAAACKGKAKVVDKGKCFHC 162
           ATS + FHR S+ G K +PSSS     KKK      K N +AA    KAK   KG CFHC
Sbjct: 208 ATSTRKFHRGSTSGTKSMPSSSGNKKWKKKKGGQGNKANLAAAKTTKKAKAA-KGICFHC 267

[Close]
BLAST of Lag0017695.1 vs. NCBI nr
Match: KAA0048404.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 154.1 bits (388), Expect = 2.4e-33
Identity = 96/191 (50.26%), Postives = 113/191 (59.16%), Query Frame = 0 

Query: 1   MLTAKEIMDSLQEMFGQLSSQVWHDALKFIYNSRMKEGTSVQEPILNLMVHFNVTEMSGV 60
           MLTA+EIMDSLQEMFGQ S Q+ HDALK+IYN+RM EG SV+E +LN+MVHFNV EM+G 
Sbjct: 87  MLTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGA 146

Query: 61  VIDEQSQGVALV-----------------------------AHTRQSLMKNKRQEREPNI 120
           VIDE SQ   ++                               T +SLMK K Q+ E N+
Sbjct: 147 VIDEASQVSFILESLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQKGEANV 206

Query: 121 ATS-KGFHRESSFGIKFVPSSSRTMSSKKKNKSGKGKNNASAAACKGKAKVVDKGKCFHC 162
           ATS + FHR S+ G K +PSSS     KKK      K N +AA    KAK   KG CFHC
Sbjct: 207 ATSTRKFHRGSTSGTKSMPSSSGNKKWKKKKGGQGNKANLAAAKTTKKAKAA-KGICFHC 266

[Close]
BLAST of Lag0017695.1 vs. NCBI nr
Match: KAA0054490.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 154.1 bits (388), Expect = 2.4e-33
Identity = 96/191 (50.26%), Postives = 113/191 (59.16%), Query Frame = 0 

Query: 1   MLTAKEIMDSLQEMFGQLSSQVWHDALKFIYNSRMKEGTSVQEPILNLMVHFNVTEMSGV 60
           MLTA+EIMDSLQEMFGQ S Q+ HDALK+IYN+RM EG SV+E +LN+MVHFNV EM+G 
Sbjct: 88  MLTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGA 147

Query: 61  VIDEQSQGVALV-----------------------------AHTRQSLMKNKRQEREPNI 120
           VIDE SQ   ++                               T +SLMK K Q+ E N+
Sbjct: 148 VIDEASQVSFILESLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQKGEANV 207

Query: 121 ATS-KGFHRESSFGIKFVPSSSRTMSSKKKNKSGKGKNNASAAACKGKAKVVDKGKCFHC 162
           ATS + FHR S+ G K +PSSS     KKK      K N +AA    KAK   KG CFHC
Sbjct: 208 ATSTRKFHRGSTSGTKSMPSSSGNKKWKKKKGGQGNKANLAAAKTTKKAKAA-KGICFHC 267

[Close]
BLAST of Lag0017695.1 vs. ExPASy TrEMBL
Match: A0A5A7T706 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold278G00760 PE=4 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 3.3e-36
Identity = 98/169 (57.99%), Postives = 115/169 (68.05%), Query Frame = 0 

Query: 1   MLTAKEIMDSLQEMFGQLSSQVWHDALKFIYNSRMKEGTSVQEPILNLMVHFNVTEMSGV 60
           MLTA+EIMDSLQEMFGQ S Q+ HDALK+IYN+RM EG SV+E +LN+M+HFNV EM   
Sbjct: 54  MLTAREIMDSLQEMFGQTSYQIKHDALKYIYNARMNEGASVREHVLNMMIHFNVAEMKEA 113

Query: 61  VIDEQSQGVALVA------HTRQSLMKNKRQEREPNIATS-KGFHRESSFGIKFVPSSSR 120
           VIDE SQ    +        T +SLMK K Q+ E N+ATS + FHR S+ G KF+PSSS 
Sbjct: 114 VIDEASQIAYTLTTLLNELQTFESLMKIKGQKGEANVATSTRKFHRGSNSGNKFMPSSSG 173

Query: 121 TMSSKKKNKSGKGKNNASAAACKGKAKVVD-KGKCFHCNVHGHWNRNCP 162
               KKK K G+G N A+ AA K   K  D KG CFHCN  GHW RNCP
Sbjct: 174 NKKWKKK-KGGQG-NKANLAAAKTSKKAKDAKGICFHCNQEGHWKRNCP 220

[Close]
BLAST of Lag0017695.1 vs. ExPASy TrEMBL
Match: A0A5D3DYU3 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2406G00160 PE=4 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 5.2e-34
Identity = 98/191 (51.31%), Postives = 115/191 (60.21%), Query Frame = 0 

Query: 1   MLTAKEIMDSLQEMFGQLSSQVWHDALKFIYNSRMKEGTSVQEPILNLMVHFNVTEMSGV 60
           MLTA+EIMDSLQEMFGQ S Q+ HDALK+IYN+RM EG SV+E +LN+MVHFNV EM+G 
Sbjct: 1   MLTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGA 60

Query: 61  VIDEQSQGVAL-------------------VAHTR----------QSLMKNKRQEREPNI 120
           VIDE SQ   +                   +A+T           +SLMK K Q+ E N+
Sbjct: 61  VIDEASQVSFILKSLPESFLQFRSNAVMNKIAYTLTTLLNELQNFESLMKIKGQKGEANV 120

Query: 121 ATS-KGFHRESSFGIKFVPSSSRTMSSKKKNKSGKGKNNASAAACKGKAKVVDKGKCFHC 162
           ATS + FHR S+ G K VPSSS     KKK      K N +AA    KAK   KG CFHC
Sbjct: 121 ATSTRKFHRGSTCGTKSVPSSSGNKKWKKKKGGQGNKANPAAAKTSKKAKAA-KGICFHC 180

[Close]
BLAST of Lag0017695.1 vs. ExPASy TrEMBL
Match: A0A5A7SMH8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G002560 PE=4 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 1.2e-33
Identity = 96/191 (50.26%), Postives = 113/191 (59.16%), Query Frame = 0 

Query: 1   MLTAKEIMDSLQEMFGQLSSQVWHDALKFIYNSRMKEGTSVQEPILNLMVHFNVTEMSGV 60
           MLTA+EIMDSLQEMFGQ S Q+ HDALK+IYN+RM EG SV+E +LN+MVHFNV EM+G 
Sbjct: 88  MLTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGA 147

Query: 61  VIDEQSQGVALV-----------------------------AHTRQSLMKNKRQEREPNI 120
           VIDE SQ   ++                               T +SLMK K Q+ E N+
Sbjct: 148 VIDEASQVSFILESLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQKGEANV 207

Query: 121 ATS-KGFHRESSFGIKFVPSSSRTMSSKKKNKSGKGKNNASAAACKGKAKVVDKGKCFHC 162
           ATS + FHR S+ G K +PSSS     KKK      K N +AA    KAK   KG CFHC
Sbjct: 208 ATSTRKFHRGSTSGTKSMPSSSGNKKWKKKKGGQGNKANLAAAKTTKKAKAA-KGICFHC 267

[Close]
BLAST of Lag0017695.1 vs. ExPASy TrEMBL
Match: A0A5A7V4M1 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold468G00930 PE=4 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 1.2e-33
Identity = 96/191 (50.26%), Postives = 113/191 (59.16%), Query Frame = 0 

Query: 1   MLTAKEIMDSLQEMFGQLSSQVWHDALKFIYNSRMKEGTSVQEPILNLMVHFNVTEMSGV 60
           MLTA+EIMDSLQEMFGQ S Q+ HDALK+IYN+RM EG SV+E +LN+MVHFNV EM+G 
Sbjct: 205 MLTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGA 264

Query: 61  VIDEQSQGVALV-----------------------------AHTRQSLMKNKRQEREPNI 120
           VIDE SQ   ++                               T +SLMK K Q+ E N+
Sbjct: 265 VIDEASQVSFILESLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQKGEANV 324

Query: 121 ATS-KGFHRESSFGIKFVPSSSRTMSSKKKNKSGKGKNNASAAACKGKAKVVDKGKCFHC 162
           ATS + FHR S+ G K +PSSS     KKK      K N +AA    KAK   KG CFHC
Sbjct: 325 ATSTRKFHRGSTSGTKSMPSSSGNKKWKKKKGGQGNKANLAAAKTTKKAKAA-KGICFHC 384

[Close]
BLAST of Lag0017695.1 vs. ExPASy TrEMBL
Match: A0A5A7TU93 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74G002590 PE=4 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 1.2e-33
Identity = 96/191 (50.26%), Postives = 113/191 (59.16%), Query Frame = 0 

Query: 1   MLTAKEIMDSLQEMFGQLSSQVWHDALKFIYNSRMKEGTSVQEPILNLMVHFNVTEMSGV 60
           MLTA+EIMDSLQEMFGQ S Q+ HDALK+IYN+RM EG SV+E +LN+MVHFNV EM+G 
Sbjct: 88  MLTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGA 147

Query: 61  VIDEQSQGVALV-----------------------------AHTRQSLMKNKRQEREPNI 120
           VIDE SQ   ++                               T +SLMK K Q+ E N+
Sbjct: 148 VIDEASQVSFILESLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQKGEANV 207

Query: 121 ATS-KGFHRESSFGIKFVPSSSRTMSSKKKNKSGKGKNNASAAACKGKAKVVDKGKCFHC 162
           ATS + FHR S+ G K +PSSS     KKK      K N +AA    KAK   KG CFHC
Sbjct: 208 ATSTRKFHRGSTSGTKSMPSSSGNKKWKKKKGGQGNKANLAAAKTTKKAKAA-KGICFHC 267

The following BLAST results are available for this feature:
BLAST of Lag0017695.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0037371.16.7e-3657.99gag/pol protein [Cucumis melo var. makuwa][more]
TYK28896.11.1e-3351.31gag/pol protein [Cucumis melo var. makuwa][more]
KAA0044955.12.4e-3350.26gag/pol protein [Cucumis melo var. makuwa][more]
KAA0048404.12.4e-3350.26gag/pol protein [Cucumis melo var. makuwa][more]
KAA0054490.12.4e-3350.26gag/pol protein [Cucumis melo var. makuwa][more]
BLAST of Lag0017695.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Lag0017695.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7T7063.3e-3657.99Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold278G0076... [more]
A0A5D3DYU35.2e-3451.31Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2406G001... [more]
A0A5A7SMH81.2e-3350.26Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G0025... [more]
A0A5A7V4M11.2e-3350.26Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold468G0093... [more]
A0A5A7TU931.2e-3350.26Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74G00259... [more]
BLAST of Lag0017695.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D4.10.60.10coord: 137..166
e-value: 2.3E-6
score: 29.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 108..132
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 146..162
score: 9.125269
IPR036875Zinc finger, CCHC-type superfamilySUPERFAMILY57756Retrovirus zinc finger-like domainscoord: 136..164

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Lag0017695Lag0017695gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Lag0017695.1.exon5Lag0017695.1.exon5exon
Lag0017695.1.exon4Lag0017695.1.exon4exon
Lag0017695.1.exon3Lag0017695.1.exon3exon
Lag0017695.1.exon2Lag0017695.1.exon2exon
Lag0017695.1.exon1Lag0017695.1.exon1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
cds.Lag0017695.1cds.Lag0017695.1_5CDS
cds.Lag0017695.1cds.Lag0017695.1_4CDS
cds.Lag0017695.1cds.Lag0017695.1_3CDS
cds.Lag0017695.1cds.Lag0017695.1_2CDS
cds.Lag0017695.1cds.Lag0017695.1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Lag0017695.1Lag0017695.1-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding