Lag0017099.1 (mRNA) Sponge gourd (AG‐4) v1

Overview


Name	Lag0017099.1
Type	mRNA
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Reverse transcriptase domain-containing protein
Location	chr5: 183421 .. 186497 (+)
Sequence length	651
RNA-Seq Expression	Lag0017099.1
Synteny	Lag0017099.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCCTTCATCCCTCATCACAACTTGCTGCCCGTTCTATCACTCTATTGTTGCAACGTTGAAGACACCTTCCATCTTCTAAACCATGGGAACAAGCCACCAAAAGCGATCACAAGGAAGAATGCAGATAAATGGGTCAATCTAAAATCCACCAACGAAATCCTCTTATCTTCCCTATACCTTCCGAAAAGGGTGTAATTACATTTTTTTTTGTACTAAAAACGACTTCTATTAGTAGACATGATGGAACCAATCTTATTCCAAATAAGAAAAGAAGAAGTGGAGGAATCTTCATAGAAAAATCCCAAATCGGAATAATTTTGGGAGTGCAAATCTTTATGGAAGGTAAGTCAACTCCATGTGTGGTAGGTTCCATAAAATTATTGACAAATTAATCAAATACCATTAAATAGTAGGAACACATGGAGAAACAAGACAAATTGAATCAAAGTCCTTGATAATATTGTCAAAATCGAATTCAATTTTTTAGACAGAGCCACAAATTATTCGACAAAATTTCCATCAACAAAGCTCATTGTTTTGAATCTCCAACCCAAATCTTCCAAATCTACAAAAATTTGATGGACAACCCAATGTCAAATTGTGCAGTACAAACATCGATCCATCTCGTCCAAAGAGATCAAATCTAGAGCCATGGCAGTCGAAAAAGAAACTAGAGCAAAAAAATTGAAGGCCTCGTTCTACAATGTTTTAAATCTGGAATGATGATGGGGAAGCAATGATAGAGAGATAGCGGGTGCTGCGACAAGGAATGATAAGGGAGATGTGGCGGCAACAACAACACTAGCAAGGGTTCAGTAGATAAGGAGAAAGAGGGATTGAGGAAAGAGAAGGGGTATAACTCCATCACATTTTGCCATGTCATAGTTCAATCCTCAAAAGAAAATATAATATTAATGTATTTTGCCACATAGTTATAGCAGTCCAAAATGGCCTTGCCACCTCTCTGTTAGTTAGTGGTCAAATGACTCCAGGGACCATTTAGAATGATTTTTTAAACTAGTGAAACTAAAGTGTTCCTTTTGAAACTTTAGGGACCAAATAGACATTAACCTCAAATTTGACAGACCAAAAGTATATGTTTCCCTAAAAAATAAACCAAAATTGTGGTGCTTAAAGCACTGTCTACCATCTAGCAATGGGGCTACCAAATGGCAATTACTACCAAGCATGGGAGTGTAAAATCCCACTAACACCTTCAGTGCAGCTTGAAAATTAAGAAATGTAGAAGAAGATGTTGAAAAACAATTGAAGTTGATTAGTTGACTTACTAAGATTATGTTAGTTGACTTACCTTCACTAAGATGCTGAAAGACAATTGAAGTTGGCACAAGTTACATGGTCTTCCTTCTCCAGTTCTTCTTATTCTACTTCATTTCTTCATCTTTTTTTTTATGAAAAATAATTCTTCATCTTCGAACTTTGGTTCTTCCTCCTAATTAAAGACTTAACAAAGAAGAATGGAAGATTTGGAGTATGATTAAAGAAGAGCATAAGAAGAATTGAATAACGAAATAAGAAAAATTCTAGATCGGGTGACTGGAAGGCTTAATTATTCTTATTTAGATCCATGGCGATGGGAAGGCAAAAGGTGAGCGCCTTGTATACCAAGCGTTCAATGTGGCCCTTGCGTTGCCCCTTTGCCATAGGTGAGAGCCCGAATGTGCCTTGAAATCATTGCTCTTAAGAACCATTTCCAGGTCCCAAGGAGCTTTTGTCATATGATTGAGGAGTTCCTCCTTTTTAAGATTGGTTGGCCCCTTTTGCTGCGTTCTTTGTCGGAAGGGGAGGAAGATCTCGATTATTTGCTGTGGGGTTGTGATTTTGCTCACTCGCCTCTTTGAATTTTTCGGTTTTCAGATGATAGAGGAGTTCCTCCTCCATCCATCGTTTCGGGATAAAGGAAGGTTTTTATGGTTTGCTGGTGTTTGTGCTATTCTATGGGGATTATGGGGGGAAAGGAACCATATAATTTTTAGAGGGATAATAAGACTTCCTTGTGAGGTTTGGGTCAATATTAGATTTTATGTTATGTTATGGGCCTCCGTTTCTAAGGCTTTTTGTAATTTTTTTTTAGGACTCATTTTGCTTGGTTGGAACCCCTTTTTGTAGTTGGGTTCCTTTGTGTTGGGGCTTGGTTCTTTAGATGCTCTTGTATTCTTTCATTCTTTCTCAATAAAAACTTTGGTTCTTTATAAAAAAAAGATTGATTTTGAACCTGCTTTCGATCATGTGGATTGAGATTTCCTTGATAAAGTTTTGGGTTCAAATGGAGAGCTTGGATTTGGAATTGCATTAGATCAGTGAACTCGTCCATTTTTGTTAATGGTAGACCTAGAGGGAATATATTTGGTACAAAAAGGCTTAAGGCTTAAGCAAGGAGACCTTCTCTCTACTTTTCCCTTCATTCTCATGGTTGATGTCTTGAATAGGTTAGTGTTGTCAGCCCTAGATAAGGGAGTGGTAGAGGGATTTAAGTTGAGTTTAGTTAAGTTGCAACTGTTGCATCTCCAATTCGCTGATGACACCCTTTTCTTTTGCTATGAAAAGGAGTCTTTTAGGAATCTAAATGGCTTGTTGTGTTTTTTTGAAGCTATCTCTAGTCTTAAAATCAATTGTCAGAAAAGCTCCATCGTGGTTCTTAATTGCGAGCATTCTTAAGCTAATTTCTTGGACCTTGTTGGTTGGGTGTGAAGTGAGTAAGCTCACTTGTTCTTATCTTGGTCTTCCTCTAGGGGTAGCCTAAGTGGCGAGTCGGAGAGGATTCTGAAATGGCTTTTTCTCTTAGCCGATTGATGTCGGAGGTTTGGGTATTGGGAACCTAAGACTACATAATGAAACCCTTCTGGTGAAGTGGTTGTGGCGTTTTTTCTTTGAGCCAGATGCTCTGTGGTATAAGGTTATCGTGAGTAACTATGGACCATTTGTTGTGGGATTGTCGTTTTGCTTGCTCTGTTTGGAGCCTGTTCTTTGAGGTTTTTGGGTTTCAGACTGTTGGCCAGCGCATGTGCTGGGAGATGATCGAGGAATTCCTCCTCCATCCATTGTTTTGGTAG

mRNA sequence

ATGCCCTTCATCCCTCATCACAACTTGCTGCCCGTTCTATCACTCTATTGTTGCAACGTTGAAGACACCTTCCATCTTCTAAACCATGGGAACAAGCCACCAAAAGCGATCACAAGGAAGAATGCAGATAAATGGATCCATGGCGATGGGAAGGCAAAAGGTGAGCGCCTTGTATACCAAGCGTTCAATGTGGCCCTTGCGTTGCCCCTTTGCCATAGATTGGTTGGCCCCTTTTGCTGCGTTCTTTGTCGGAAGGGGAGGAAGATCTCGATTATTTGCTGTGGGGTTGTGATTTTGCTCACTCGCCTCTTTGAATTTTTCGGTTTTCAGATGATAGAGGAGTTCCTCCTCCATCCATCGTTTCGGGATAAAGGAAGGTTTTTATGGTTTGCTGGTGTTTGTGCTATTCTATGGGGATTATGGGGGGAAAGGAACCATATAATTTTTAGAGGGATAATAAGACTTCCTTGTGAGCCGATTGATGTCGGAGGTTTGGGTATTGGGAACCTAAGACTACATAATGAAACCCTTCTGGTGAAGTGGTTGTGGCGTTTTTTCTTTGAGCCAGATGCTCTGTGGTATAAGACTGTTGGCCAGCGCATGTGCTGGGAGATGATCGAGGAATTCCTCCTCCATCCATTGTTTTGGTAG

Coding sequence (CDS)

ATGCCCTTCATCCCTCATCACAACTTGCTGCCCGTTCTATCACTCTATTGTTGCAACGTTGAAGACACCTTCCATCTTCTAAACCATGGGAACAAGCCACCAAAAGCGATCACAAGGAAGAATGCAGATAAATGGATCCATGGCGATGGGAAGGCAAAAGGTGAGCGCCTTGTATACCAAGCGTTCAATGTGGCCCTTGCGTTGCCCCTTTGCCATAGATTGGTTGGCCCCTTTTGCTGCGTTCTTTGTCGGAAGGGGAGGAAGATCTCGATTATTTGCTGTGGGGTTGTGATTTTGCTCACTCGCCTCTTTGAATTTTTCGGTTTTCAGATGATAGAGGAGTTCCTCCTCCATCCATCGTTTCGGGATAAAGGAAGGTTTTTATGGTTTGCTGGTGTTTGTGCTATTCTATGGGGATTATGGGGGGAAAGGAACCATATAATTTTTAGAGGGATAATAAGACTTCCTTGTGAGCCGATTGATGTCGGAGGTTTGGGTATTGGGAACCTAAGACTACATAATGAAACCCTTCTGGTGAAGTGGTTGTGGCGTTTTTTCTTTGAGCCAGATGCTCTGTGGTATAAGACTGTTGGCCAGCGCATGTGCTGGGAGATGATCGAGGAATTCCTCCTCCATCCATTGTTTTGGTAG

Protein sequence

MPFIPHHNLLPVLSLYCCNVEDTFHLLNHGNKPPKAITRKNADKWIHGDGKAKGERLVYQAFNVALALPLCHRLVGPFCCVLCRKGRKISIICCGVVILLTRLFEFFGFQMIEEFLLHPSFRDKGRFLWFAGVCAILWGLWGERNHIIFRGIIRLPCEPIDVGGLGIGNLRLHNETLLVKWLWRFFFEPDALWYKTVGQRMCWEMIEEFLLHPLFW

Homology

[Close]

BLAST of Lag0017099.1 vs. NCBI nr
Match: KAA0066908.1 (mitochondrial phosphate carrier protein 3 [Cucumis melo var. makuwa])

HSP 1 Score: 73.6 bits (179), Expect = 2.4e-09
Identity = 36/67 (53.73%), Postives = 43/67 (64.18%), Query Frame = 0


Query: 111 MIEEFLLHPSFRDKGRFLWFAGVCAILWGLWGERNHIIFRG----IIRLPCEPI---DVG 170
           MIEEFLLH  FRDKG FLW AGVCA++W +WG+RN  + RG    I+R    P    +V 
Sbjct: 349 MIEEFLLHSPFRDKGSFLWLAGVCAVMWDIWGKRNDRVLRGRRGCIVRFVFVPFLFNEVA 408

[Close]

BLAST of Lag0017099.1 vs. NCBI nr
Match: TYK23653.1 (SIL1 [Cucumis melo var. makuwa])

HSP 1 Score: 71.6 bits (174), Expect = 9.2e-09
Identity = 29/48 (60.42%), Postives = 36/48 (75.00%), Query Frame = 0


Query: 111 MIEEFLLHPSFRDKGRFLWFAGVCAILWGLWGERNHIIFRGIIRLPCE 159
           +I EFLL    R+KG FLW  GVCA++W LWGERN+ +FRG+ R PCE
Sbjct: 33  VIGEFLLRLPLREKGCFLWCVGVCAVIWNLWGERNNRVFRGVEREPCE 80

[Close]

BLAST of Lag0017099.1 vs. NCBI nr
Match: TYK26833.1 (nardilysin-like [Cucumis melo var. makuwa])

HSP 1 Score: 71.2 bits (173), Expect = 1.2e-08
Identity = 30/47 (63.83%), Postives = 35/47 (74.47%), Query Frame = 0


Query: 112 IEEFLLHPSFRDKGRFLWFAGVCAILWGLWGERNHIIFRGIIRLPCE 159
           IEEFLLHPS R+  RF+W AGVCAI+W +WGERN  +FR     PCE
Sbjct: 157 IEEFLLHPSSRENCRFMWLAGVCAIMWNIWGERNDRVFREKEWDPCE 203

[Close]

BLAST of Lag0017099.1 vs. NCBI nr
Match: TYK19563.1 (uncharacterized protein E5676_scaffold416G00660 [Cucumis melo var. makuwa])

HSP 1 Score: 69.7 bits (169), Expect = 3.5e-08
Identity = 27/41 (65.85%), Postives = 33/41 (80.49%), Query Frame = 0


Query: 111 MIEEFLLHPSFRDKGRFLWFAGVCAILWGLWGERNHIIFRG 152
           M E F+LHP F++KGRFLW A VCAI+W +WGERN  +FRG
Sbjct: 313 MTEGFILHPPFKEKGRFLWLAEVCAIMWDIWGERNDRVFRG 353

[Close]

BLAST of Lag0017099.1 vs. NCBI nr
Match: KAG7976272.1 (hypothetical protein I3843_06G141300 [Carya illinoinensis])

HSP 1 Score: 68.6 bits (166), Expect = 7.8e-08
Identity = 31/64 (48.44%), Postives = 42/64 (65.62%), Query Frame = 0


Query: 137 LWGLWGE--RNHIIFRGIIRLPCEPIDVGGLGIGNLRLHNETLLVKWLWRFFFEPDALWY 196
           LWG  GE  + H++  G +   C P   GGLGI N+++ N+TLL KWLWR+ +EPDALW 
Sbjct: 123 LWGGLGEEFKYHLVKWGTV---CRPFSKGGLGIKNVKVFNQTLLGKWLWRYSWEPDALWR 182

Query: 197 KTVG 199
             +G
Sbjct: 183 GVIG 183

[Close]

BLAST of Lag0017099.1 vs. ExPASy TrEMBL
Match: A0A5A7VGR5 (Mitochondrial phosphate carrier protein 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold550G00280 PE=3 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 1.2e-09
Identity = 36/67 (53.73%), Postives = 43/67 (64.18%), Query Frame = 0


Query: 111 MIEEFLLHPSFRDKGRFLWFAGVCAILWGLWGERNHIIFRG----IIRLPCEPI---DVG 170
           MIEEFLLH  FRDKG FLW AGVCA++W +WG+RN  + RG    I+R    P    +V 
Sbjct: 349 MIEEFLLHSPFRDKGSFLWLAGVCAVMWDIWGKRNDRVLRGRRGCIVRFVFVPFLFNEVA 408

[Close]

BLAST of Lag0017099.1 vs. ExPASy TrEMBL
Match: A0A5D3DJ76 (SIL1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold577G00180 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 4.4e-09
Identity = 29/48 (60.42%), Postives = 36/48 (75.00%), Query Frame = 0


Query: 111 MIEEFLLHPSFRDKGRFLWFAGVCAILWGLWGERNHIIFRGIIRLPCE 159
           +I EFLL    R+KG FLW  GVCA++W LWGERN+ +FRG+ R PCE
Sbjct: 33  VIGEFLLRLPLREKGCFLWCVGVCAVIWNLWGERNNRVFRGVEREPCE 80

[Close]

BLAST of Lag0017099.1 vs. ExPASy TrEMBL
Match: A0A5D3DT90 (Nardilysin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold260G00220 PE=3 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 5.8e-09
Identity = 30/47 (63.83%), Postives = 35/47 (74.47%), Query Frame = 0


Query: 112 IEEFLLHPSFRDKGRFLWFAGVCAILWGLWGERNHIIFRGIIRLPCE 159
           IEEFLLHPS R+  RF+W AGVCAI+W +WGERN  +FR     PCE
Sbjct: 157 IEEFLLHPSSRENCRFMWLAGVCAIMWNIWGERNDRVFREKEWDPCE 203

[Close]

BLAST of Lag0017099.1 vs. ExPASy TrEMBL
Match: A0A5D3D7T2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold416G00660 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 1.7e-08
Identity = 27/41 (65.85%), Postives = 33/41 (80.49%), Query Frame = 0


Query: 111 MIEEFLLHPSFRDKGRFLWFAGVCAILWGLWGERNHIIFRG 152
           M E F+LHP F++KGRFLW A VCAI+W +WGERN  +FRG
Sbjct: 313 MTEGFILHPPFKEKGRFLWLAEVCAIMWDIWGERNDRVFRG 353

[Close]

BLAST of Lag0017099.1 vs. ExPASy TrEMBL
Match: A0A6J1DFI2 (uncharacterized protein LOC111019624 OS=Momordica charantia OX=3673 GN=LOC111019624 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 3.8e-08
Identity = 29/59 (49.15%), Postives = 37/59 (62.71%), Query Frame = 0


Query: 158 EPIDVGGLGIGNLRLHNETLLVKWLWRFFFEPDALWYKTVGQRMCWEMIEEFLLHPLFW 217
           +P++ GGLG+GNLRL NE  L KWLWRFF EP ALW K +        + ++  HP  W
Sbjct: 220 KPLEAGGLGVGNLRLRNEAFLAKWLWRFFHEPHALWRKII--------VSKYERHPSDW 270

The following BLAST results are available for this feature:

BLAST of Lag0017099.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0066908.1	2.4e-09	53.73	mitochondrial phosphate carrier protein 3 [Cucumis melo var. makuwa]	[more]
TYK23653.1	9.2e-09	60.42	SIL1 [Cucumis melo var. makuwa]	[more]
TYK26833.1	1.2e-08	63.83	nardilysin-like [Cucumis melo var. makuwa]	[more]
TYK19563.1	3.5e-08	65.85	uncharacterized protein E5676_scaffold416G00660 [Cucumis melo var. makuwa]	[more]
KAG7976272.1	7.8e-08	48.44	hypothetical protein I3843_06G141300 [Carya illinoinensis]	[more]

BLAST of Lag0017099.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Lag0017099.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VGR5	1.2e-09	53.73	Mitochondrial phosphate carrier protein 3 OS=Cucumis melo var. makuwa OX=1194695...	[more]
A0A5D3DJ76	4.4e-09	60.42	SIL1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold577G00180 PE=4 SV=1	[more]
A0A5D3DT90	5.8e-09	63.83	Nardilysin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold260G0022...	[more]
A0A5D3D7T2	1.7e-08	65.85	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A6J1DFI2	3.8e-08	49.15	uncharacterized protein LOC111019624 OS=Momordica charantia OX=3673 GN=LOC111019...	[more]

BLAST of Lag0017099.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lag0017099	Lag0017099	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lag0017099.1.exon1	Lag0017099.1.exon1	exon
Lag0017099.1.exon2	Lag0017099.1.exon2	exon
Lag0017099.1.exon3	Lag0017099.1.exon3	exon
Lag0017099.1.exon4	Lag0017099.1.exon4	exon
Lag0017099.1.exon5	Lag0017099.1.exon5	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.Lag0017099.1	cds.Lag0017099.1	CDS
cds.Lag0017099.1	cds.Lag0017099.1_2	CDS
cds.Lag0017099.1	cds.Lag0017099.1_3	CDS
cds.Lag0017099.1	cds.Lag0017099.1_4	CDS
cds.Lag0017099.1	cds.Lag0017099.1_5	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lag0017099.1	Lag0017099.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0022900	electron transport chain
cellular_component	GO:0016020	membrane
cellular_component	GO:0005739	mitochondrion
molecular_function	GO:0005488	binding
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0016491	oxidoreductase activity