Lag0016247.1 (mRNA) Sponge gourd (AG‐4) v1

Overview


Name	Lag0016247.1
Type	mRNA
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Protein PXR1
Location	chr12: 35242036 .. 35244958 (+)
Sequence length	480
RNA-Seq Expression	Lag0016247.1
Synteny	Lag0016247.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTAGGAAATCTCAAGGCTGAACAATCTGATAAAGCCACATGTAAGAAGAATTCTGGGTAATGGTAATCATACTTCTTTTTGGCATGATGTCTGGGCTACTGATATAGACCTTGCTACAAAATTTTCACAGATTTATAGGCTTTCTAATAATGTTAATGCAACGGTGGCTGAATTATGGAATTCGGAAAGTAATGATTGGGACTTGGGTCTAAGAAGACGTCTCAAAGATTCTGAGATTGATGATTGGGCATCTTTGGCCCATATCTTATAATCTTTTGCCCTAAAAAGGCTGAATGATACTTGGCAATGAACTTTAGATCCATCCAAAAGCTATACAGTACGATCTATGATGCATTTTCTGATGATGCCGCAAGTCAGTGTTATTCAACCTTTATTTACAGCTATATGGAAAGGTTTCTATCCTAGAAAGATAAAGATTTTTCTTTGGGAGCTTAGTCATGATGGTGTTAATACGGTGGAACGTCTCCAAAGAAGAATGCCATATAATGCTATCTCACCCTCTTGGTGCATTATGTGTAAAGCCAATTCGGAATCTCAATGTCATCTATTTGCCTCCTGTGTTTTTGCCCAGCAGTATTGGAAGTTTATCTTGACTGGCTTTGGTTGGAAGGATTTTCAATGACACACAATCATCCTTTGAGAACTTTTTGGATTTAGTTATTTTTAATGCTCTTTTTTTTTTTTTTTTTGACAAGAAACATCAGGGAATATCATAAATTACAAAAGGATATAACAACCTAGGGGCCAAGGGTGGAGGAAACCCATGCCCAAACGCTAAGTTATTTTAATGCTCTTTACTAGTGTAAATGTTTACATCCTTTTAAGGATCATAGTCTTGTGTCCTTGACTCTTAATTGGAGGTCCTTTTTGTAATTTGTTTATAATGGCTCAGGGATTTATCCATCATTTCATTGTCTCTCTAAAAAAAAAAAACTCATGTGAGTACGAGGCATGGTGAATCAAGTTGAGCTAGGGATGCATAAAAGGGTAATCTTGTCTTTGTCATGACATCTGGGAGTTATTTATGGGGATACCAGCAGCAGCCATGGTAAAGAGGATGATTAGTTATGAGGGCAAGGGAGAAGAGAGATCCCTGTATGAGGAGAAGAAGTTATACAGAGGAAGAAGAAGGAATTCGGTATGTAAATCAGAGAGATGATTGGGGACTCTCAAATTTTCAGTTCCAATGTTTCAACCAGATTTCTAATGGTTTTCTACTAGAAATATATTCAAATTCTCTGGTTATTCAATTGAACTCAAGGCTATCACAGAATTACGTCACCCTTAAATCCTATAGTCCTATAGTTGAGTCTCACAATATTTATTTAGGCCCACATTTGATAACTAGGCTTGTTTTCTCACCATTTCTCTACAATGATTTTCATATTTCTGAAGGGAACATTTGATTTCTTAGCCAAATGCCAAAAACAAAAACAAGTTTTTTTTTTTTTTTTAGAGAGAAACATAATGATTTCATTGATAAATGAAATGATCAGAGGGAAAAAACCCCGAACCATTATGAGCAACTTACAAAAAGGACCTCCAATCAAGAGTCAAAAGCAAGGCTATATTCCTTAAAAGGATGGAAACATTTACACCAATGAAGAGCATTATAAATAGCTAAATCCAGAAAGTTTTCAAAGGATGATTGTGTATCGTTGAAAATCCTTCCATTTCTTTCACACCATAAAGACCAAAAGAAAGAACGATTAAAGGCTAGCCAAAGAGTTTCCGCGTTTCCTTTGAAAGGATGCCCTGAAAAAACCACAGATAGTACAACTTGTAGATCCAGGCACGCAAACAAGTTTTTAAATACTACTTTTTTTTTAGTTTTCAAAATCTAGATGGGTTTTGAAAACATTGATAAAAAGTAGATAGCAAAACAAAGAAACCCATGGGTGGATGTGGAAGTAGTGTTTATAAGCTTAATTTAAAAAACCAAAAATAAAAAACCAAATGGTTACCAAACGGGTCTTAGTAATTCTTTAATTTGAAATCTGAATAGACAATGTGGTTCTATATGGTTCTGTATGCACTTGTTTATTTACCCATTTTCAGTACTTTAATAGGGATAATTACAGACGGGTTATGTTACCGGATTTGTCCCTATGGTTTGGAGAAAGTTCGAATTTAGTCTCCATGGTTTTAAAAGTTTGAATTTTTTCCCTTTGGTTTGATAAAACCTCTTAACTATTTCCTACCGTTTTGCCACGTACTCGATCCGTTAGTGGCTTCTAACGGGAGGGACTAGGGACAAAATTCTAATTTTTAGAACTATGAAAACTAAATTCTAACTTTCTCCAAACCATAGGGACCAAATTTGTAATTGAACCTTATAGATTTGTTGATGCAAGAATTAGAAGGCATCGCATACATAGAACCACCCGTTCCAATTCATTGATTTATCTTTGATAATTCAATTTGTCATGTACCATGTTATAGTAGGTTTATTATAGAAACTTGTTGAACTGGGAAGCATTTGTTTCCTTTTTTAACAGATATGCCATTACTATTATTTCTAAATAGATATCAGGAGGCAAAGAAAATAAAAGTAAAAAATCCAAGACAGAGGAGGATCTAGATTTCCCAAGACATGAAAAAATCAAATTTGGAGACGTGGTTGAAGCTCCACTGAAGTTGCTTGCAGTTCCGAAGGTAACATCTAATTGTTTATGGTCAAGTTAAATGATAAATGAACACTCCCATTTGAGTACTTGACAATTTATGTCGTTTGTCTATTGCTTCCTCTTTGTGTTTCATATAGGCGTTTAAATCTGCACAAGTTGCTTCTCAAGAGAGGAAGCGGTTGCAGGCTATAAATGAATATAGAAACCGCAAGGGATGGACCTCAAGGCCAGGGATACAAATACCTTCAATGACTATATCACCATCTGTTTAA

mRNA sequence

ATGGTAGGAAATCTCAAGGCTGAACAATCTGATAAAGCCACATGTAAGAAGAATTCTGGATCCATCCAAAAGCTATACAGTACGATCTATGATGCATTTTCTGATGATGCCGCAACAGCAGCCATGGTAAAGAGGATGATTAGTTATGAGGGCAAGGGAGAAGAGAGATCCCTGTATGAGGAGAAGAAGTTATACAGAGGAAGAAGAAGGAATTCGATATCAGGAGGCAAAGAAAATAAAAGTAAAAAATCCAAGACAGAGGAGGATCTAGATTTCCCAAGACATGAAAAAATCAAATTTGGAGACGTGGTTGAAGCTCCACTGAAGTTGCTTGCAGTTCCGAAGGCGTTTAAATCTGCACAAGTTGCTTCTCAAGAGAGGAAGCGGTTGCAGGCTATAAATGAATATAGAAACCGCAAGGGATGGACCTCAAGGCCAGGGATACAAATACCTTCAATGACTATATCACCATCTGTTTAA

Coding sequence (CDS)

ATGGTAGGAAATCTCAAGGCTGAACAATCTGATAAAGCCACATGTAAGAAGAATTCTGGATCCATCCAAAAGCTATACAGTACGATCTATGATGCATTTTCTGATGATGCCGCAACAGCAGCCATGGTAAAGAGGATGATTAGTTATGAGGGCAAGGGAGAAGAGAGATCCCTGTATGAGGAGAAGAAGTTATACAGAGGAAGAAGAAGGAATTCGATATCAGGAGGCAAAGAAAATAAAAGTAAAAAATCCAAGACAGAGGAGGATCTAGATTTCCCAAGACATGAAAAAATCAAATTTGGAGACGTGGTTGAAGCTCCACTGAAGTTGCTTGCAGTTCCGAAGGCGTTTAAATCTGCACAAGTTGCTTCTCAAGAGAGGAAGCGGTTGCAGGCTATAAATGAATATAGAAACCGCAAGGGATGGACCTCAAGGCCAGGGATACAAATACCTTCAATGACTATATCACCATCTGTTTAA

Protein sequence

MVGNLKAEQSDKATCKKNSGSIQKLYSTIYDAFSDDAATAAMVKRMISYEGKGEERSLYEEKKLYRGRRRNSISGGKENKSKKSKTEEDLDFPRHEKIKFGDVVEAPLKLLAVPKAFKSAQVASQERKRLQAINEYRNRKGWTSRPGIQIPSMTISPSV

Homology

[Close]

BLAST of Lag0016247.1 vs. NCBI nr
Match: XP_038907272.1 (protein PXR1 [Benincasa hispida] >XP_038907273.1 protein PXR1 [Benincasa hispida])

HSP 1 Score: 154.1 bits (388), Expect = 1.0e-33
Identity = 81/105 (77.14%), Postives = 89/105 (84.76%), Query Frame = 0


Query: 55  ERSLYEEKKLYRGRRRNSISGGKENKSKKSKTEEDLDFPRHEKIKFGDVVEAPLKLLAVP 114
           E S    ++L +  RR      K+NK KK++TEEDLDFPRHEKIKFGDVVEAPLKL+AVP
Sbjct: 131 EDSEESSRRLKKRERRKKYQEAKKNKHKKARTEEDLDFPRHEKIKFGDVVEAPLKLIAVP 190

Query: 115 KAFKSAQVASQERKRLQAINEYRNRKGWTSRPGIQIPSMTISPSV 160
           KAFKSAQVASQERKR QAINEYRNRKGWTSRPGIQIPSMTISP+V
Sbjct: 191 KAFKSAQVASQERKRSQAINEYRNRKGWTSRPGIQIPSMTISPAV 235

[Close]

BLAST of Lag0016247.1 vs. NCBI nr
Match: KAA0040007.1 (protein PXR1 [Cucumis melo var. makuwa])

HSP 1 Score: 152.1 bits (383), Expect = 3.9e-33
Identity = 83/105 (79.05%), Postives = 90/105 (85.71%), Query Frame = 0


Query: 55  ERSLYE-EKKLYRGRRRNSISGGKENKSKKSKTEEDLDFPRHEKIKFGDVVEAPLKLLAV 114
           E SL E  ++L +  RR      K+NK KK+KTEE LDFPRHEKIKFGDVVEAPLKLLAV
Sbjct: 130 EDSLEESSRRLKKRERRKKYQEAKKNKHKKAKTEEVLDFPRHEKIKFGDVVEAPLKLLAV 189

Query: 115 PKAFKSAQVASQERKRLQAINEYRNRKGWTSRPGIQIPSMTISPS 159
           PKAFKSAQVASQERKRLQAINEYRNRKGWTSRPGIQIPSMTI+P+
Sbjct: 190 PKAFKSAQVASQERKRLQAINEYRNRKGWTSRPGIQIPSMTIAPA 234

[Close]

BLAST of Lag0016247.1 vs. NCBI nr
Match: TYK24495.1 (protein PXR1 [Cucumis melo var. makuwa])

HSP 1 Score: 152.1 bits (383), Expect = 3.9e-33
Identity = 97/166 (58.43%), Postives = 112/166 (67.47%), Query Frame = 0


Query: 4   NLKAEQSDKA-----TCKKNSGSIQKLYSTIYDAFSDDAATAAMVKRMISYEGKGE---- 63
           N+K+ Q D +       K N G+ Q    T  D   DD  + +  K+    + K      
Sbjct: 43  NIKSNQKDASGRSDVKSKANGGNSQMPQRTGSDV--DDVQSKSSEKKNKKRKRKQVTDLR 102

Query: 64  -ERSLYE-EKKLYRGRRRNSISGGKENKSKKSKTEEDLDFPRHEKIKFGDVVEAPLKLLA 123
            E SL E  ++L +  RR      K+NK KK+KTEE LDFPRHEKIKFGDVVEAPLKLLA
Sbjct: 103 FEDSLEESSRRLKKRERRKKYQEAKKNKHKKAKTEEVLDFPRHEKIKFGDVVEAPLKLLA 162

Query: 124 VPKAFKSAQVASQERKRLQAINEYRNRKGWTSRPGIQIPSMTISPS 159
           VPKAFKSAQVASQERKRLQAINEYRNRKGWTSRPGIQIPSMTI+P+
Sbjct: 163 VPKAFKSAQVASQERKRLQAINEYRNRKGWTSRPGIQIPSMTIAPA 206

[Close]

BLAST of Lag0016247.1 vs. NCBI nr
Match: XP_022153750.1 (DNA ligase 1 [Momordica charantia] >XP_022153756.1 DNA ligase 1 [Momordica charantia] >XP_022153764.1 DNA ligase 1 [Momordica charantia])

HSP 1 Score: 152.1 bits (383), Expect = 3.9e-33
Identity = 81/106 (76.42%), Postives = 88/106 (83.02%), Query Frame = 0


Query: 54  EERSLYEEKKLYRGRRRNSISGGKENKSKKSKTEEDLDFPRHEKIKFGDVVEAPLKLLAV 113
           EE +    ++L +  RR      K+NK KK KTEEDLDFPRHEKIKFGDVVEAPLKL+AV
Sbjct: 130 EELAGESNRRLKKRERRKKFQEAKKNKHKKPKTEEDLDFPRHEKIKFGDVVEAPLKLVAV 189

Query: 114 PKAFKSAQVASQERKRLQAINEYRNRKGWTSRPGIQIPSMTISPSV 160
           PKAFKSAQVASQERKRLQAINEYRNRK WTSRPGIQIPSM ISP+V
Sbjct: 190 PKAFKSAQVASQERKRLQAINEYRNRKAWTSRPGIQIPSMGISPAV 235

[Close]

BLAST of Lag0016247.1 vs. NCBI nr
Match: XP_022959194.1 (uncharacterized protein LOC111460256 [Cucurbita moschata] >XP_022959195.1 uncharacterized protein LOC111460256 [Cucurbita moschata] >XP_022959196.1 uncharacterized protein LOC111460256 [Cucurbita moschata] >XP_022959197.1 uncharacterized protein LOC111460256 [Cucurbita moschata])

HSP 1 Score: 150.6 bits (379), Expect = 1.1e-32
Identity = 79/106 (74.53%), Postives = 88/106 (83.02%), Query Frame = 0


Query: 54  EERSLYEEKKLYRGRRRNSISGGKENKSKKSKTEEDLDFPRHEKIKFGDVVEAPLKLLAV 113
           E+ S    ++L +  R+      K+NK KK KT+EDLDFPRHEKIKFGDVVEAPLKL AV
Sbjct: 130 EDLSENSNRRLKKRERQKKYHEAKKNKHKKGKTDEDLDFPRHEKIKFGDVVEAPLKLTAV 189

Query: 114 PKAFKSAQVASQERKRLQAINEYRNRKGWTSRPGIQIPSMTISPSV 160
           PKAFKSAQVASQERKRLQAI EYRNRKGWTSRPG+QIPSMTISP+V
Sbjct: 190 PKAFKSAQVASQERKRLQAITEYRNRKGWTSRPGLQIPSMTISPAV 235

The following BLAST results are available for this feature:

BLAST of Lag0016247.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038907272.1	1.0e-33	77.14	protein PXR1 [Benincasa hispida] >XP_038907273.1 protein PXR1 [Benincasa hispida...	[more]
KAA0040007.1	3.9e-33	79.05	protein PXR1 [Cucumis melo var. makuwa]	[more]
TYK24495.1	3.9e-33	58.43	protein PXR1 [Cucumis melo var. makuwa]	[more]
XP_022153750.1	3.9e-33	76.42	DNA ligase 1 [Momordica charantia] >XP_022153756.1 DNA ligase 1 [Momordica chara...	[more]
XP_022959194.1	1.1e-32	74.53	uncharacterized protein LOC111460256 [Cucurbita moschata] >XP_022959195.1 unchar...	[more]

BLAST of Lag0016247.1 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 60..92
None	No IPR available	PANTHER	PTHR37218	COILED-COIL PROTEIN	coord: 66..156

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lag0016247	Lag0016247	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lag0016247.1.exon1	Lag0016247.1.exon1	exon
Lag0016247.1.exon2	Lag0016247.1.exon2	exon
Lag0016247.1.exon3	Lag0016247.1.exon3	exon
Lag0016247.1.exon4	Lag0016247.1.exon4	exon
Lag0016247.1.exon5	Lag0016247.1.exon5	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.Lag0016247.1	cds.Lag0016247.1	CDS
cds.Lag0016247.1	cds.Lag0016247.1_2	CDS
cds.Lag0016247.1	cds.Lag0016247.1_3	CDS
cds.Lag0016247.1	cds.Lag0016247.1_4	CDS
cds.Lag0016247.1	cds.Lag0016247.1_5	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lag0016247.1	Lag0016247.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0016874	ligase activity