Lag0016050.1 (mRNA) Sponge gourd (AG‐4) v1

Overview
NameLag0016050.1
TypemRNA
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionUnknown protein
Locationchr12: 32409572 .. 32409874 (-)
Sequence length303
RNA-Seq ExpressionLag0016050.1
SyntenyLag0016050.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGCGCGACTCCGACAGGTCTCCAATCTACGCGGGCATGAAAAATACGTCAAAGAACTGGTCGATTAAAGGGCTCAAAGCTTACGCGATCCTTGAAGGGTTAAAATTGATTCATGCAAGAGACGATGGGAACCAAGAGCTGGTGATCGAATCCGATGCACTCCACATTGTCAACTGCCTCAATGGAAATTCGGTGGACCTCTCGGAGGTCAAAAACATTCTTGATGCCATAGTCACTTTGGCTCCTTTGGTTGAAAGACTGTCGTTCAAGCACTGCCCTCGGAAGGAGAATCATTTCTGA

mRNA sequence

ATGGTGCGCGACTCCGACAGGTCTCCAATCTACGCGGGCATGAAAAATACGTCAAAGAACTGGTCGATTAAAGGGCTCAAAGCTTACGCGATCCTTGAAGGGTTAAAATTGATTCATGCAAGAGACGATGGGAACCAAGAGCTGGTGATCGAATCCGATGCACTCCACATTGTCAACTGCCTCAATGGAAATTCGGTGGACCTCTCGGAGGTCAAAAACATTCTTGATGCCATAGTCACTTTGGCTCCTTTGGTTGAAAGACTGTCGTTCAAGCACTGCCCTCGGAAGGAGAATCATTTCTGA

Coding sequence (CDS)

ATGGTGCGCGACTCCGACAGGTCTCCAATCTACGCGGGCATGAAAAATACGTCAAAGAACTGGTCGATTAAAGGGCTCAAAGCTTACGCGATCCTTGAAGGGTTAAAATTGATTCATGCAAGAGACGATGGGAACCAAGAGCTGGTGATCGAATCCGATGCACTCCACATTGTCAACTGCCTCAATGGAAATTCGGTGGACCTCTCGGAGGTCAAAAACATTCTTGATGCCATAGTCACTTTGGCTCCTTTGGTTGAAAGACTGTCGTTCAAGCACTGCCCTCGGAAGGAGAATCATTTCTGA

Protein sequence

MVRDSDRSPIYAGMKNTSKNWSIKGLKAYAILEGLKLIHARDDGNQELVIESDALHIVNCLNGNSVDLSEVKNILDAIVTLAPLVERLSFKHCPRKENHF
Homology
[Close]
BLAST of Lag0016050.1 vs. NCBI nr
Match: XP_024190234.1 (uncharacterized protein LOC112194221 [Rosa chinensis])

HSP 1 Score: 54.3 bits (129), Expect = 7.0e-04
Identity = 36/98 (36.73%), Postives = 52/98 (53.06%), Query Frame = 0 

Query: 1    MVRDSDRSPIYAGMKNTSKNWSIKGLKAYAILEGLKLIHARDDGNQELVIESDALHIVNC 60
            +VRD +     AG K    N SI  ++A A+  GL L   R+ G Q LV+ESD+  +++ 
Sbjct: 1088 VVRDGEGKLKCAGHKVLPGNPSIVAIEALAVYHGLLLY--REAGFQNLVVESDSTIVIDA 1147

Query: 61   LNGNSVDLSEVKNILDAIVTLAPLVERLSFKHCPRKEN 99
            LN   +DLS    +LD I  LA   E + +K   R+ N
Sbjct: 1148 LNKTELDLSVEGGVLDDIKCLASTFESVPWKKVNREGN 1183

The following BLAST results are available for this feature:
BLAST of Lag0016050.1 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_024190234.17.0e-0436.73uncharacterized protein LOC112194221 [Rosa chinensis][more]
BLAST of Lag0016050.1 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002156Ribonuclease H domainPFAMPF13456RVT_3coord: 14..99
e-value: 1.2E-10
score: 41.2
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 1..100
e-value: 3.1E-7
score: 32.4
IPR044730Ribonuclease H-like domain, plant typeCDDcd06222RNase_H_likecoord: 28..98
e-value: 6.33153E-10
score: 50.0052

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Lag0016050Lag0016050gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Lag0016050.1.exon1Lag0016050.1.exon1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
cds.Lag0016050.1cds.Lag0016050.1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Lag0016050.1Lag0016050.1-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity