Lag0015694.1 (mRNA) Sponge gourd (AG‐4) v1

Overview
NameLag0015694.1
TypemRNA
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionUnknown protein
Locationchr12: 20391246 .. 20392440 (+)
Sequence length528
RNA-Seq ExpressionLag0015694.1
SyntenyLag0015694.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGTCCAATTGGATCCCGGATGATGCCTGTCTTAAAGTCCGCTCGTCGGCCACCTTGGCACCTGAATGTCGGGTACCTGATCTTGTTACAACCTTGGGACAGTGGAATGAGGAGATGATTCGACAACACTTCAGCCCTCGGGAGGTGAGTCTTATTCTTAATATTCCTTTACGTAATGTGTTGTCTAAAGATAGAGTTTGAGAAATTTGGATTATATATGGTTAAAAGCAGGTACTGGTTGGGGCAAATGGCCTTGCTTGCACAATCGTCATCTCCTTCTTCGGATGATTCAATCCTTAGTTGGTGGAAGGGATGTTGGAAAATGGCAATCCCGAATAAAATTAAAATATTTTTGTGGAGACTTTGTTTGGATCGGTTGCCCACCATAGATAATTTAAGTGCTCATGATGTGGATGTATTGAATGTGTGTAGTCTGTGTGGTAGGCATGGTGAGTCTAGTATGCATGTTTTCTGGCAATGCAAATTTATTCGGGAATGTTTGGTGGATTTTGAATTCGGGTCATTGTTGCAAAGTGTTCAGGCGGGGACAATGCTGCATTTACTTAGGGATGTGAAGGACAGGGTTTGATGGGCGAAGTTTGAAGTCCATGTGGTGGTTTTGTGGGCAGTATGGAATGGTTGTAATCAGCGGAAGTTTATAGGCGCTACTCCAAATCTGGGGATTGTGGATTGGGTAGTGGGTTATATCGCTGCGTTTCGTGAGGCCATTCACTGGGGTGATGTTGGATTGTGTAGGGGGTGGTTCGGAGGGGTGTGGGTTGGATTCCGTCGGAAATGGGTTGGTATAAGGTAAATGTTGACGCAACTTTTTGAGAGGACGAGCTCTGGTCGGGGTCAGGAATAATTGTAAGGGATTCGACAGGGCAGGTGATGCTCTCGGCTATGGTGGGGCATGACCATGTTCGGAGTTCTGATATGGCTGAAGCGTGAGCTGTGAATTGATGGATTGAGAATGGCGGTGGATATGGGTTTGTTACTGTTGGTGCTTGAATCTTACTCCAACCGTATAGTGTCTCTGATCCGAGGTGAGGAAGTTGAGTTTGATTTATCTGAGGTGGGAATGTTAATTGTTGAGTTACGCATGGAAGCACCAGTTTCGTCTGTGTTTGGGTGCAATTTTAGTCGAAGAGAAGGGAATAGAGTTGCTCACCAACTGGCAACTGGCTCGTAA

mRNA sequence

ATGGGGTCCAATTGGATCCCGGATGATGCCTGTCTTAAAGTCCGCTCGTCGGCCACCTTGGCACCTGAATGTCGGGTACCTGATCTTGTTACAACCTTGGGACAGTGGAATGAGGAGATGATTCGACAACACTTCAGCCCTCGGGAGCGGAAGTTTATAGGCGCTACTCCAAATCTGGGGATTGTGGATTGGGTAGTGGGTTATATCGCTGCGTTTCGTGAGGCCATTCACTGGGGTGATGTTGGATTGTGTAGGGGGTGGTTCGGAGGGGTGTGGGTTGGATTCCGTCGGAAATGGGTTGGTATAAGAATGGCGGTGGATATGGGTTTGTTACTGTTGGTGCTTGAATCTTACTCCAACCGTATAGTGTCTCTGATCCGAGGTGAGGAAGTTGAGTTTGATTTATCTGAGGTGGGAATGTTAATTGTTGAGTTACGCATGGAAGCACCAGTTTCGTCTGTGTTTGGGTGCAATTTTAGTCGAAGAGAAGGGAATAGAGTTGCTCACCAACTGGCAACTGGCTCGTAA

Coding sequence (CDS)

ATGGGGTCCAATTGGATCCCGGATGATGCCTGTCTTAAAGTCCGCTCGTCGGCCACCTTGGCACCTGAATGTCGGGTACCTGATCTTGTTACAACCTTGGGACAGTGGAATGAGGAGATGATTCGACAACACTTCAGCCCTCGGGAGCGGAAGTTTATAGGCGCTACTCCAAATCTGGGGATTGTGGATTGGGTAGTGGGTTATATCGCTGCGTTTCGTGAGGCCATTCACTGGGGTGATGTTGGATTGTGTAGGGGGTGGTTCGGAGGGGTGTGGGTTGGATTCCGTCGGAAATGGGTTGGTATAAGAATGGCGGTGGATATGGGTTTGTTACTGTTGGTGCTTGAATCTTACTCCAACCGTATAGTGTCTCTGATCCGAGGTGAGGAAGTTGAGTTTGATTTATCTGAGGTGGGAATGTTAATTGTTGAGTTACGCATGGAAGCACCAGTTTCGTCTGTGTTTGGGTGCAATTTTAGTCGAAGAGAAGGGAATAGAGTTGCTCACCAACTGGCAACTGGCTCGTAA

Protein sequence

MGSNWIPDDACLKVRSSATLAPECRVPDLVTTLGQWNEEMIRQHFSPRERKFIGATPNLGIVDWVVGYIAAFREAIHWGDVGLCRGWFGGVWVGFRRKWVGIRMAVDMGLLLLVLESYSNRIVSLIRGEEVEFDLSEVGMLIVELRMEAPVSSVFGCNFSRREGNRVAHQLATGS
Homology
The following BLAST results are available for this feature:
BLAST of Lag0015694.1 vs.
Match NameE-valueIdentityDescription
BLAST of Lag0015694.1 vs.
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002156Ribonuclease H domainPFAMPF13456RVT_3coord: 99..173
e-value: 1.7E-6
score: 27.8

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Lag0015694Lag0015694gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Lag0015694.1.exon1Lag0015694.1.exon1exon
Lag0015694.1.exon2Lag0015694.1.exon2exon
Lag0015694.1.exon3Lag0015694.1.exon3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
cds.Lag0015694.1cds.Lag0015694.1CDS
cds.Lag0015694.1cds.Lag0015694.1_2CDS
cds.Lag0015694.1cds.Lag0015694.1_3CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Lag0015694.1Lag0015694.1-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity