Lag0015690.1 (mRNA) Sponge gourd (AG‐4) v1

Overview


Name	Lag0015690.1
Type	mRNA
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Unknown protein
Location	chr12: 20344919 .. 20345290 (+)
Sequence length	372
RNA-Seq Expression	Lag0015690.1
Synteny	Lag0015690.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAGGGTGATGCTTCTCTACTGTTTCATGAAGGGGTTTGAGTTAAATATTAGTAGCATTAACAGAGATGAGATTCTCTCTTGTGGGAGAAAGAGAACTAGGAAGTTCTTATTTGGCTCACTCATTACCAAACTGTGCCAAAGGGCAAAGATCGTTCCAGCAAAAGATGAGGAACAACAATTCTATAGATCGACCATCAACCTCCCACTCAATGAGAAGTTGAAGTTATTCAATGCACAAAGGAAAGACAAAGCCTCGACTACTCAAGCCAGTCCTTCATGGAGACATGTGACTGCCTCACCTCCACCAGCCACTTCTATCTCGAGGCCGACACCATCATTGGAGGACCTCAACTTTCCCTACAAGTAG

mRNA sequence

ATGGAGAGGGTGATGCTTCTCTACTGTTTCATGAAGGGGTTTGAGTTAAATATTAGTAGCATTAACAGAGATGAGATTCTCTCTTGTGGGAGAAAGAGAACTAGGAAGTTCTTATTTGGCTCACTCATTACCAAACTGTGCCAAAGGGCAAAGATCGTTCCAGCAAAAGATGAGGAACAACAATTCTATAGATCGACCATCAACCTCCCACTCAATGAGAAGTTGAAGTTATTCAATGCACAAAGGAAAGACAAAGCCTCGACTACTCAAGCCAGTCCTTCATGGAGACATGTGACTGCCTCACCTCCACCAGCCACTTCTATCTCGAGGCCGACACCATCATTGGAGGACCTCAACTTTCCCTACAAGTAG

Coding sequence (CDS)

ATGGAGAGGGTGATGCTTCTCTACTGTTTCATGAAGGGGTTTGAGTTAAATATTAGTAGCATTAACAGAGATGAGATTCTCTCTTGTGGGAGAAAGAGAACTAGGAAGTTCTTATTTGGCTCACTCATTACCAAACTGTGCCAAAGGGCAAAGATCGTTCCAGCAAAAGATGAGGAACAACAATTCTATAGATCGACCATCAACCTCCCACTCAATGAGAAGTTGAAGTTATTCAATGCACAAAGGAAAGACAAAGCCTCGACTACTCAAGCCAGTCCTTCATGGAGACATGTGACTGCCTCACCTCCACCAGCCACTTCTATCTCGAGGCCGACACCATCATTGGAGGACCTCAACTTTCCCTACAAGTAG

Protein sequence

MERVMLLYCFMKGFELNISSINRDEILSCGRKRTRKFLFGSLITKLCQRAKIVPAKDEEQQFYRSTINLPLNEKLKLFNAQRKDKASTTQASPSWRHVTASPPPATSISRPTPSLEDLNFPYK

Homology

[Close]

BLAST of Lag0015690.1 vs. NCBI nr
Match: XP_004514776.1 (uncharacterized protein LOC101493401 isoform X3 [Cicer arietinum])

HSP 1 Score: 55.1 bits (131), Expect = 5.1e-04
Identity = 27/70 (38.57%), Postives = 42/70 (60.00%), Query Frame = 0


Query: 2   ERVMLLYCFMKGFELNISSINRDEILSCG--RKRTRKFLFGSLITKLCQRAKIVPAKDEE 61
           +R++LLYC ++GF +N+  I  DEI++C   +K+  + LF SLI+ LC R  +    D+E
Sbjct: 257 DRLLLLYCVVEGFSINVGKIIYDEIIACAFKKKKKERLLFPSLISDLCVRNGVRVEDDDE 316

Query: 62  QQFYRSTINL 70
               R  I L
Sbjct: 317 VVINREAIGL 326

[Close]

BLAST of Lag0015690.1 vs. NCBI nr
Match: XP_004514775.1 (uncharacterized protein LOC101493401 isoform X2 [Cicer arietinum])

HSP 1 Score: 55.1 bits (131), Expect = 5.1e-04
Identity = 27/70 (38.57%), Postives = 42/70 (60.00%), Query Frame = 0


Query: 2   ERVMLLYCFMKGFELNISSINRDEILSCG--RKRTRKFLFGSLITKLCQRAKIVPAKDEE 61
           +R++LLYC ++GF +N+  I  DEI++C   +K+  + LF SLI+ LC R  +    D+E
Sbjct: 257 DRLLLLYCVVEGFSINVGKIIYDEIIACAFKKKKKERLLFPSLISDLCVRNGVRVEDDDE 316

Query: 62  QQFYRSTINL 70
               R  I L
Sbjct: 317 VVINREAIGL 326

[Close]

BLAST of Lag0015690.1 vs. NCBI nr
Match: XP_012575515.1 (uncharacterized protein LOC101493401 isoform X1 [Cicer arietinum])

HSP 1 Score: 55.1 bits (131), Expect = 5.1e-04
Identity = 27/70 (38.57%), Postives = 42/70 (60.00%), Query Frame = 0


Query: 2   ERVMLLYCFMKGFELNISSINRDEILSCG--RKRTRKFLFGSLITKLCQRAKIVPAKDEE 61
           +R++LLYC ++GF +N+  I  DEI++C   +K+  + LF SLI+ LC R  +    D+E
Sbjct: 257 DRLLLLYCVVEGFSINVGKIIYDEIIACAFKKKKKERLLFPSLISDLCVRNGVRVEDDDE 316

Query: 62  QQFYRSTINL 70
               R  I L
Sbjct: 317 VVINREAIGL 326

The following BLAST results are available for this feature:

BLAST of Lag0015690.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004514776.1	5.1e-04	38.57	uncharacterized protein LOC101493401 isoform X3 [Cicer arietinum]	[more]
XP_004514775.1	5.1e-04	38.57	uncharacterized protein LOC101493401 isoform X2 [Cicer arietinum]	[more]
XP_012575515.1	5.1e-04	38.57	uncharacterized protein LOC101493401 isoform X1 [Cicer arietinum]	[more]

BLAST of Lag0015690.1 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 82..114
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 81..123

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lag0015690	Lag0015690	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lag0015690.1.exon1	Lag0015690.1.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.Lag0015690.1	cds.Lag0015690.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lag0015690.1	Lag0015690.1-protein	polypeptide