Lag0015640.1 (mRNA) Sponge gourd (AG‐4) v1

Overview


Name	Lag0015640.1
Type	mRNA
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	PMD domain-containing protein
Location	chr12: 18439391 .. 18439937 (-)
Sequence length	444
RNA-Seq Expression	Lag0015640.1
Synteny	Lag0015640.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGAAGGTTTGACTTTTAGTCTTGTTATTCTAGTTTTGGCTAATATTTATCATGGATTGGGCCAGATTTATAAAGCGTCTCCTTCGGTAGGACGTTCCGAAGCTTGTTTTCTAGTGCATTATGTTTACGTTTGGCTTGCTTATTATTTGAACATGCATTATGCAGTTCTAGAAAAAGGTAGGGGCCCAATGATGGTTGAGTTTTTCGGAGAGGGTGGAGCTAAATACTTTGACGATTTTGACACTCGTGTACATATTCATAAAGGTAAATATGTATCATGGCATGCGAATCTCCCTCCCAACAATAAAGACATGGTTGTGAAAGATGATGACAAGCTATCATTTTGGCATTCCTCATTCTTTATAAGCATTTGATCATGCTTCTTATCTTCACGATGTGGGTCTTCGATGGTCATTGAAGCTTATAGTCCTTGTCGATTTAGCCAACAATTTGGATTTTACCAACGTGCCAAACAATCTAAGTGAAGAAGTTCCTGAAGCCACCTTAGATAATATATTGCGTCTTTGGATGATATGTGTTTAA

mRNA sequence

ATGGCTGAAGGTTTGACTTTTAGTCTTGTTATTCTAGTTTTGGCTAATATTTATCATGGATTGGGCCAGATTTATAAAGCGTCTCCTTCGGTAGGACGTTCCGAAGCTTGTTTTCTAGTGCATTATGTTTACGTTTGGCTTGCTTATTATTTGAACATGCATTATGCAGTTCTAGAAAAAGGTAGGGGCCCAATGATGGTTGAGTTTTTCGGAGAGGGTGGAGCTAAATACTTTGACGATTTTGACACTCGTGTACATATTCATAAAGCATTTGATCATGCTTCTTATCTTCACGATGTGGGTCTTCGATGGTCATTGAAGCTTATAGTCCTTGTCGATTTAGCCAACAATTTGGATTTTACCAACGTGCCAAACAATCTAAGTGAAGAAGTTCCTGAAGCCACCTTAGATAATATATTGCGTCTTTGGATGATATGTGTTTAA

Coding sequence (CDS)

ATGGCTGAAGGTTTGACTTTTAGTCTTGTTATTCTAGTTTTGGCTAATATTTATCATGGATTGGGCCAGATTTATAAAGCGTCTCCTTCGGTAGGACGTTCCGAAGCTTGTTTTCTAGTGCATTATGTTTACGTTTGGCTTGCTTATTATTTGAACATGCATTATGCAGTTCTAGAAAAAGGTAGGGGCCCAATGATGGTTGAGTTTTTCGGAGAGGGTGGAGCTAAATACTTTGACGATTTTGACACTCGTGTACATATTCATAAAGCATTTGATCATGCTTCTTATCTTCACGATGTGGGTCTTCGATGGTCATTGAAGCTTATAGTCCTTGTCGATTTAGCCAACAATTTGGATTTTACCAACGTGCCAAACAATCTAAGTGAAGAAGTTCCTGAAGCCACCTTAGATAATATATTGCGTCTTTGGATGATATGTGTTTAA

Protein sequence

MAEGLTFSLVILVLANIYHGLGQIYKASPSVGRSEACFLVHYVYVWLAYYLNMHYAVLEKGRGPMMVEFFGEGGAKYFDDFDTRVHIHKAFDHASYLHDVGLRWSLKLIVLVDLANNLDFTNVPNNLSEEVPEATLDNILRLWMICV

Homology

[Close]

BLAST of Lag0015640.1 vs. NCBI nr
Match: KAA0050733.1 (uncharacterized protein E6C27_scaffold560G00370 [Cucumis melo var. makuwa] >TYJ95697.1 uncharacterized protein E5676_scaffold726G00240 [Cucumis melo var. makuwa])

HSP 1 Score: 128.3 bits (321), Expect = 5.6e-26
Identity = 68/147 (46.26%), Postives = 87/147 (59.18%), Query Frame = 0


Query: 1   MAEGLTFSLVILVLANIYHGLGQIYKASPSVGRSEACFLVHYVYVWLAYYLNMHYAVLEK 60
           MAEG TFSL I VLANIY GL QI+ ++ S+G S  CF +HYV+ WLA Y N HY     
Sbjct: 237 MAEGYTFSLAIPVLANIYSGLHQIHDSTSSLGHSNVCFPIHYVHGWLALYFNTHYKASTS 296

Query: 61  GRGPMMVEFFGEGGAKYFDDFDTRVHIHKAFDHASYLHDVGLRWSLKLIVLVDLANNLDF 120
            RGP MVEF GEGGAKY+ + + R+HIHK  +   +    G                  +
Sbjct: 297 LRGPCMVEFSGEGGAKYYTNLEARMHIHKG-NPCRFGRQFGF-----------------Y 356

Query: 121 TNVPNNLSEEVPEATLDNILRLWMICV 148
            +VP +LSE++P+A L N+   WMICV
Sbjct: 357 QDVPYDLSEKIPKANLANVRYHWMICV 365

[Close]

BLAST of Lag0015640.1 vs. NCBI nr
Match: XP_031745312.1 (uncharacterized protein LOC116405439 [Cucumis sativus])

HSP 1 Score: 120.2 bits (300), Expect = 1.5e-23
Identity = 70/182 (38.46%), Postives = 94/182 (51.65%), Query Frame = 0


Query: 1   MAEGLTFSLVILVLANIYHGLGQIYKASPSVGRSEACFLVHYVYVWLAYYLNMHYAVLEK 60
           MAEG TFSL + VLANIY GL Q++ ++ S+G S ACF +HYV+ WLA Y N HY     
Sbjct: 340 MAEGYTFSLAVPVLANIYSGLRQVHDSTSSLGYSNACFPLHYVHGWLALYFNTHYKAPRS 399

Query: 61  GRGPMMVEFFGEGGAKYFDDFDTRVHIHK-----------AFDHASYLHDVG--LRWSLK 120
            RGP MVEF GEGGAKY+ + + R HIHK             +    L D G  + W+  
Sbjct: 400 LRGPRMVEFSGEGGAKYYTNLEARTHIHKGKYVSWHACLPTKNKDELLTDDGELISWNAS 459

Query: 121 LIVLVD---LANNLD-------------------FTNVPNNLSEEVPEATLDNILRLWMI 148
             + +    L++                      + +VP +L EE+PEA   N+   WMI
Sbjct: 460 FFISIRSCFLSSQCGSSTVIEPYSPCRFSRQFGFYQDVPYDLGEEIPEANFFNVRYCWMI 519

[Close]

BLAST of Lag0015640.1 vs. NCBI nr
Match: TYK08451.1 (uncharacterized protein E5676_scaffold654G00670 [Cucumis melo var. makuwa])

HSP 1 Score: 117.5 bits (293), Expect = 9.9e-23
Identity = 70/182 (38.46%), Postives = 92/182 (50.55%), Query Frame = 0


Query: 1   MAEGLTFSLVILVLANIYHGLGQIYKASPSVGRSEACFLVHYVYVWLAYYLNMHYAVLEK 60
           MAEG TFSL I VLANIY GL QI+  + S+G S ACF +HYV+ WLA Y N +Y     
Sbjct: 171 MAEGDTFSLAIPVLANIYSGLRQIHDCTSSLGHSNACFPIHYVHGWLALYFNTYYKAPTS 230

Query: 61  GRGPMMVEFFGEGGAKYFDDFDTRVHIHK-----------AFDHASYLHDVG--LRWSLK 120
            RGP MVEF GEGGAKY+ + + R HIHK           A +    L D G  + W+  
Sbjct: 231 LRGPRMVEFSGEGGAKYYTNLEARTHIHKEKYVSWHACLQAKNKDELLTDDGTLIHWNAS 290

Query: 121 LIVLVDLANNLD----------------------FTNVPNNLSEEVPEATLDNILRLWMI 148
             + +                             + +VP +L +++P+A L N+   WMI
Sbjct: 291 FFISIRFCFLFSQYGSSTVIEPYSPCRFGRQFGFYQDVPYDLGKKIPKANLANVRYHWMI 350

[Close]

BLAST of Lag0015640.1 vs. NCBI nr
Match: KAA0047641.1 (uncharacterized protein E6C27_scaffold115G001240 [Cucumis melo var. makuwa] >TYK08299.1 uncharacterized protein E5676_scaffold648G00820 [Cucumis melo var. makuwa])

HSP 1 Score: 106.7 bits (265), Expect = 1.8e-19
Identity = 65/147 (44.22%), Postives = 76/147 (51.70%), Query Frame = 0


Query: 1   MAEGLTFSLVILVLANIYHGLGQIYKASPSVGRSEACFLVHYVYVWLAYYLNMHYAVLEK 60
           MAEG TFSLVI VLANIY  L QI+ ++ S+G S ACF +HYV+ WLA Y N HY     
Sbjct: 374 MAEGYTFSLVIPVLANIYSSLRQIHDSTSSLGHSNACFPIHYVHGWLALYFNTHYKAPTS 433

Query: 61  GRGPMMVEFFGEGGAKYFDDFDTRVHIHKAFDHASYLHDVGLRWSLKLIVLVDLANNLDF 120
            RGP MVEF  E                           V   W L LIVL+ L  NLDF
Sbjct: 434 LRGPCMVEFSDE---------------------------VDPLWLLNLIVLIALVGNLDF 493

Query: 121 TNVPNNLSEEVPEATLDNILRLWMICV 148
                +L E++P+A L N    WMI V
Sbjct: 494 IKSWYDLDEKIPKADLTNARYHWMIYV 493

[Close]

BLAST of Lag0015640.1 vs. NCBI nr
Match: KAA0060136.1 (uncharacterized protein E6C27_scaffold39G00570 [Cucumis melo var. makuwa])

HSP 1 Score: 106.3 bits (264), Expect = 2.3e-19
Identity = 51/88 (57.95%), Postives = 61/88 (69.32%), Query Frame = 0


Query: 1   MAEGLTFSLVILVLANIYHGLGQIYKASPSVGRSEACFLVHYVYVWLAYYLNMHYAVLEK 60
           MAEG TFSL I +LANIY GL QI+  + S+G S ACF +HYV+ WLA Y N +Y     
Sbjct: 88  MAEGDTFSLAIPILANIYSGLRQIHDCTSSLGHSNACFPIHYVHGWLALYFNTYYKAPTS 147

Query: 61  GRGPMMVEFFGEGGAKYFDDFDTRVHIH 89
            RGP MVEF GEGGAKY+ + + R HIH
Sbjct: 148 LRGPRMVEFSGEGGAKYYTNLEARTHIH 175

The following BLAST results are available for this feature:

BLAST of Lag0015640.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0050733.1	5.6e-26	46.26	uncharacterized protein E6C27_scaffold560G00370 [Cucumis melo var. makuwa] >TYJ9...	[more]
XP_031745312.1	1.5e-23	38.46	uncharacterized protein LOC116405439 [Cucumis sativus]	[more]
TYK08451.1	9.9e-23	38.46	uncharacterized protein E5676_scaffold654G00670 [Cucumis melo var. makuwa]	[more]
KAA0047641.1	1.8e-19	44.22	uncharacterized protein E6C27_scaffold115G001240 [Cucumis melo var. makuwa] >TYK...	[more]
KAA0060136.1	2.3e-19	57.95	uncharacterized protein E6C27_scaffold39G00570 [Cucumis melo var. makuwa]	[more]

BLAST of Lag0015640.1 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36607	1,2-DIHYDROXY-3-KETO-5-METHYLTHIOPENTENE DIOXYGENASE 4	coord: 1..91

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lag0015640	Lag0015640	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lag0015640.1.exon2	Lag0015640.1.exon2	exon
Lag0015640.1.exon1	Lag0015640.1.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.Lag0015640.1	cds.Lag0015640.1_2	CDS
cds.Lag0015640.1	cds.Lag0015640.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lag0015640.1	Lag0015640.1-protein	polypeptide