Lag0015570.1 (mRNA) Sponge gourd (AG‐4) v1

Overview


Name	Lag0015570.1
Type	mRNA
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	At-rich interactive domain-containing protein
Location	chr12: 16490550 .. 16492327 (-)
Sequence length	408
RNA-Seq Expression	Lag0015570.1
Synteny	Lag0015570.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTTCAGCTAGAATATGCGGCTCTTGATGCTGTTGTGCTCGTCCATATCTTCCAACATGTTCGAGATCAGTCACAGCCATCTACAACAGCAGAGGGGCAAAAACGACTCGAGTGGAAATCTTTTATTGTAAGTCTTCCATTCTTCGATTCGCTGTCCATTGACGAAGTGTGAATTCTGAAAATCGAAGTAATTGGCAAGTCATCGTCTTCTCTAACTCGTTCTTTCTTATCTTTGAATTAATTTGTAGGTGTCCCACATGGATAACACCCCGAAACTGAAAAAGAAAAGGAACAAAAGCAAAAAGGAACCTAAAGTTGCAACCAACTTGTAATGTAAGTCATGTTAGGATCCTGATGGTACACTTCTACCTTTGTGTACATATTCATTTAAATCATAATTATTTGTTAATTTTTCATGTGTTTCCATTGAAATAGTCAATGTGTACATAATTAAGCATGCTGATGTGAAGATGTATGGTGCATGAATTTTTCTTTTTAACAGTCTCATTCCCTGTATACTTGGCCTTTGGCACAGGAAGAATAAGGAAAAAGGAAGAGCCAAATAAGATGAAGTAAAAAAAGAAAACCAAAAATCTATAACTTAAAATAAAAATAAAACATATTTATGATAGCAAATAAAATAATTTATGAGTTGATAGCTAGCCTAGCTAGAGATTTGAGCATTTATTATGAAAGCAAAGAAAAAACACGCAACTAAAAATTTCACTCCAAAGTGAATTTTAATTAGTTCTCATATCTACCTTCAGTATTTACTGCTATTGACAATTTTTAGGATTTGAGCATTTATTATGAAAGCTGCAGAATGACATTTCTGATGTGCTTGTATGAAGTATGAGCTATTTTCATAAACAAAGAGAATGGAAGAAGATATTTTGGTTAACTGGTTGCTTATTTGTTTTAGGGTATTCCTTATGTCATATATTGGAGAAGCACATTTTCTTGTTATGCAGCATGTCATTTCCGTAATGCATTCCTTTCGGTTCTTCAGAGGTACTCCATTAGTACGAATATGCAGATTAATCAGTTATTCCAATGGAGGTTGTGGTATAGGTGGAAAGTAAAGGATAATTGAACCTATTTTTTTTATGTGAATTGCAGTTCATCTGCTCATACATGGGACGCATTTCAACTTGTTTTCTTGAAACCTGCAGACGTGTTTCGTGCGCCACTGAAGGTGTTTTTTCTTGTAGTGTTAGGTCACAGCTCGCCAAAAGTGAAAGTAGACAAAAATAATAATAATGACTATAGGAAAAAAAAGAATCATCTTATTTAGAATTGTGGATAGATATGCAAGTTTGAAGTTAAAGTTGATTTTTAAATATTTTGTAAAGAATCATTTTTCTTTCGGTTGTAATGAGTAATTAAATTGTGGCAAGATTCTTTCACCATTTGGAACATAGCACAATGTTTTTTTGGGAGGGGGGGTGAGATATTGTTCATCAGTTTGTGTTTTGTTTAGTGTTACCAAGTGTGTATTTTGTTTTTTTTTTTTCCTGTTGCCCATTGATGGAGATTATATTTCATTTACATGTAAGTTCAATGAGTTTTCTTTGTTAAATTGTATGTTAAGGAAAATGGATTAATAGGTTATATCGTTTGAGATCCTAGAGTGAAGCTTTCCTTTTATTTATTTATTTTGTAGTCTTTTCTCTGTGCAATATAGTTGCATCACAACAAGCCACAATTGAAGAAATTTCAAGAAGGTTGACAAGTGGAGAAGGTTCATCGTCTAATGTGGAAAGGACTCCAGAATAG

mRNA sequence

ATGCTTCAGCTAGAATATGCGGCTCTTGATGCTGTTGTGCTCGTCCATATCTTCCAACATGTTCGAGATCAGTCACAGCCATCTACAACAGCAGAGGGGCAAAAACGACTCGAGTGGAAATCTTTTATTGGTATTCCTTATGTCATATATTGGAGAAGCACATTTTCTTGTTATGCAGCATGTCATTTCCGTAATGCATTCCTTTCGGTTCTTCAGAGTTCATCTGCTCATACATGGGACGCATTTCAACTTGTTTTCTTGAAACCTGCAGACGTGTTTCGTGCGCCACTGAAGGTGTTTTTTCTTGTAGTGTTAGTTGCATCACAACAAGCCACAATTGAAGAAATTTCAAGAAGGTTGACAAGTGGAGAAGGTTCATCGTCTAATGTGGAAAGGACTCCAGAATAG

Coding sequence (CDS)

ATGCTTCAGCTAGAATATGCGGCTCTTGATGCTGTTGTGCTCGTCCATATCTTCCAACATGTTCGAGATCAGTCACAGCCATCTACAACAGCAGAGGGGCAAAAACGACTCGAGTGGAAATCTTTTATTGGTATTCCTTATGTCATATATTGGAGAAGCACATTTTCTTGTTATGCAGCATGTCATTTCCGTAATGCATTCCTTTCGGTTCTTCAGAGTTCATCTGCTCATACATGGGACGCATTTCAACTTGTTTTCTTGAAACCTGCAGACGTGTTTCGTGCGCCACTGAAGGTGTTTTTTCTTGTAGTGTTAGTTGCATCACAACAAGCCACAATTGAAGAAATTTCAAGAAGGTTGACAAGTGGAGAAGGTTCATCGTCTAATGTGGAAAGGACTCCAGAATAG

Protein sequence

MLQLEYAALDAVVLVHIFQHVRDQSQPSTTAEGQKRLEWKSFIGIPYVIYWRSTFSCYAACHFRNAFLSVLQSSSAHTWDAFQLVFLKPADVFRAPLKVFFLVVLVASQQATIEEISRRLTSGEGSSSNVERTPE

Homology

[Close]

BLAST of Lag0015570.1 vs. NCBI nr
Match: XP_023548213.1 (AT-rich interactive domain-containing protein 4-like [Cucurbita pepo subsp. pepo] >XP_023548214.1 AT-rich interactive domain-containing protein 4-like [Cucurbita pepo subsp. pepo] >XP_023548215.1 AT-rich interactive domain-containing protein 4-like [Cucurbita pepo subsp. pepo] >XP_023548216.1 AT-rich interactive domain-containing protein 4-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 91.7 bits (226), Expect = 5.4e-15
Identity = 41/41 (100.00%), Postives = 41/41 (100.00%), Query Frame = 0


Query: 44  GIPYVIYWRSTFSCYAACHFRNAFLSVLQSSSAHTWDAFQL 85
           GIPYVIYWRSTFSCYAACHFRNAFLSVLQSSSAHTWDAFQL
Sbjct: 133 GIPYVIYWRSTFSCYAACHFRNAFLSVLQSSSAHTWDAFQL 173

[Close]

BLAST of Lag0015570.1 vs. NCBI nr
Match: KAG6575416.1 (AT-rich interactive domain-containing protein 4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 91.7 bits (226), Expect = 5.4e-15
Identity = 41/41 (100.00%), Postives = 41/41 (100.00%), Query Frame = 0


Query: 44  GIPYVIYWRSTFSCYAACHFRNAFLSVLQSSSAHTWDAFQL 85
           GIPYVIYWRSTFSCYAACHFRNAFLSVLQSSSAHTWDAFQL
Sbjct: 133 GIPYVIYWRSTFSCYAACHFRNAFLSVLQSSSAHTWDAFQL 173

[Close]

BLAST of Lag0015570.1 vs. NCBI nr
Match: XP_022953795.1 (AT-rich interactive domain-containing protein 4-like [Cucurbita moschata] >XP_022953796.1 AT-rich interactive domain-containing protein 4-like [Cucurbita moschata] >XP_022953797.1 AT-rich interactive domain-containing protein 4-like [Cucurbita moschata] >XP_022953798.1 AT-rich interactive domain-containing protein 4-like [Cucurbita moschata])

HSP 1 Score: 91.7 bits (226), Expect = 5.4e-15
Identity = 41/41 (100.00%), Postives = 41/41 (100.00%), Query Frame = 0


Query: 44  GIPYVIYWRSTFSCYAACHFRNAFLSVLQSSSAHTWDAFQL 85
           GIPYVIYWRSTFSCYAACHFRNAFLSVLQSSSAHTWDAFQL
Sbjct: 133 GIPYVIYWRSTFSCYAACHFRNAFLSVLQSSSAHTWDAFQL 173

[Close]

BLAST of Lag0015570.1 vs. NCBI nr
Match: XP_022992125.1 (AT-rich interactive domain-containing protein 4-like [Cucurbita maxima] >XP_022992126.1 AT-rich interactive domain-containing protein 4-like [Cucurbita maxima] >XP_022992127.1 AT-rich interactive domain-containing protein 4-like [Cucurbita maxima] >XP_022992128.1 AT-rich interactive domain-containing protein 4-like [Cucurbita maxima] >XP_022992129.1 AT-rich interactive domain-containing protein 4-like [Cucurbita maxima])

HSP 1 Score: 91.7 bits (226), Expect = 5.4e-15
Identity = 41/41 (100.00%), Postives = 41/41 (100.00%), Query Frame = 0


Query: 44  GIPYVIYWRSTFSCYAACHFRNAFLSVLQSSSAHTWDAFQL 85
           GIPYVIYWRSTFSCYAACHFRNAFLSVLQSSSAHTWDAFQL
Sbjct: 133 GIPYVIYWRSTFSCYAACHFRNAFLSVLQSSSAHTWDAFQL 173

[Close]

BLAST of Lag0015570.1 vs. NCBI nr
Match: KAG7013957.1 (AT-rich interactive domain-containing protein 4 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 91.7 bits (226), Expect = 5.4e-15
Identity = 41/41 (100.00%), Postives = 41/41 (100.00%), Query Frame = 0


Query: 44  GIPYVIYWRSTFSCYAACHFRNAFLSVLQSSSAHTWDAFQL 85
           GIPYVIYWRSTFSCYAACHFRNAFLSVLQSSSAHTWDAFQL
Sbjct: 133 GIPYVIYWRSTFSCYAACHFRNAFLSVLQSSSAHTWDAFQL 173

[Close]

BLAST of Lag0015570.1 vs. ExPASy Swiss-Prot
Match: Q6NQ79 (AT-rich interactive domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=ARID4 PE=1 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.7e-08
Identity = 24/41 (58.54%), Postives = 32/41 (78.05%), Query Frame = 0


Query: 44  GIPYVIYWRSTFSCYAACHFRNAFLSVLQSSSAHTWDAFQL 85
           G+ YVIYW++ FS YAACHFR++  SV+QSS + TWD F +
Sbjct: 134 GVQYVIYWKNVFSKYAACHFRHSLFSVIQSSCSDTWDVFHV 174

The following BLAST results are available for this feature:

BLAST of Lag0015570.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023548213.1	5.4e-15	100.00	AT-rich interactive domain-containing protein 4-like [Cucurbita pepo subsp. pepo...	[more]
KAG6575416.1	5.4e-15	100.00	AT-rich interactive domain-containing protein 4, partial [Cucurbita argyrosperma...	[more]
XP_022953795.1	5.4e-15	100.00	AT-rich interactive domain-containing protein 4-like [Cucurbita moschata] >XP_02...	[more]
XP_022992125.1	5.4e-15	100.00	AT-rich interactive domain-containing protein 4-like [Cucurbita maxima] >XP_0229...	[more]
KAG7013957.1	5.4e-15	100.00	AT-rich interactive domain-containing protein 4 [Cucurbita argyrosperma subsp. a...	[more]

BLAST of Lag0015570.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6NQ79	1.7e-08	58.54	AT-rich interactive domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 ...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR042293	AT-rich interactive domain-containing protein 4	PANTHER	PTHR46694	AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4	coord: 42..84
None	No IPR available	PANTHER	PTHR46694:SF1	AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4	coord: 42..84

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lag0015570	Lag0015570	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lag0015570.1.exon4	Lag0015570.1.exon4	exon
Lag0015570.1.exon3	Lag0015570.1.exon3	exon
Lag0015570.1.exon2	Lag0015570.1.exon2	exon
Lag0015570.1.exon1	Lag0015570.1.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.Lag0015570.1	cds.Lag0015570.1_4	CDS
cds.Lag0015570.1	cds.Lag0015570.1_3	CDS
cds.Lag0015570.1	cds.Lag0015570.1_2	CDS
cds.Lag0015570.1	cds.Lag0015570.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lag0015570.1	Lag0015570.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046872	metal ion binding