Lag0014871.1 (mRNA) Sponge gourd (AG‐4) v1

Overview
NameLag0014871.1
TypemRNA
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionUnknown protein
Locationchr12: 5423486 .. 5423880 (-)
Sequence length288
RNA-Seq ExpressionLag0014871.1
SyntenyLag0014871.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTTCGACGGCTTTCATCTTCCTCGGTCTTCTTTTCGCCATTGTCGTCCTCCTCTTCTCCCCGGAGGAGGTAACGGTTACAGCAAGAGATGTGAAAAACAGTGAGTTTCATTGCCACACACACCTCATTTGATGATACATTAAAATGTACCTACTTCTACTAGTTTATTTAGTGTCACATATGTTGATTCTAATGATAACATAGTAGAAGAAGCTGCAATGGAAACTAGTGGAGTTGTCGATGTCAAGCGCCGCAGTTTCAGAGGAGGCCGCCTCAGATTCAGTGGCGGAGCCACCACAGGCCCGGCCATTGACACCACGGTTGTTGTCACCACCACCATGGTGACTGCAGCAGGTGCTGTGCAGCTTTGCTTGGTGAGGCTGTTGATGTAG

mRNA sequence

ATGAGTTCGACGGCTTTCATCTTCCTCGGTCTTCTTTTCGCCATTGTCGTCCTCCTCTTCTCCCCGGAGGAGGTAACGGTTACAGCAAGAGATGTGAAAAACAAAGAAGCTGCAATGGAAACTAGTGGAGTTGTCGATGTCAAGCGCCGCAGTTTCAGAGGAGGCCGCCTCAGATTCAGTGGCGGAGCCACCACAGGCCCGGCCATTGACACCACGGTTGTTGTCACCACCACCATGGTGACTGCAGCAGGTGCTGTGCAGCTTTGCTTGGTGAGGCTGTTGATGTAG

Coding sequence (CDS)

ATGAGTTCGACGGCTTTCATCTTCCTCGGTCTTCTTTTCGCCATTGTCGTCCTCCTCTTCTCCCCGGAGGAGGTAACGGTTACAGCAAGAGATGTGAAAAACAAAGAAGCTGCAATGGAAACTAGTGGAGTTGTCGATGTCAAGCGCCGCAGTTTCAGAGGAGGCCGCCTCAGATTCAGTGGCGGAGCCACCACAGGCCCGGCCATTGACACCACGGTTGTTGTCACCACCACCATGGTGACTGCAGCAGGTGCTGTGCAGCTTTGCTTGGTGAGGCTGTTGATGTAG

Protein sequence

MSSTAFIFLGLLFAIVVLLFSPEEVTVTARDVKNKEAAMETSGVVDVKRRSFRGGRLRFSGGATTGPAIDTTVVVTTTMVTAAGAVQLCLVRLLM
Homology
[Close]
BLAST of Lag0014871.1 vs. NCBI nr
Match: XP_038888333.1 (glycine-rich protein-like isoform X1 [Benincasa hispida])

HSP 1 Score: 67.8 bits (164), Expect = 5.8e-08
Identity = 42/58 (72.41%), Postives = 44/58 (75.86%), Query Frame = 0 

Query: 1  MSSTAFIFLGLLFAIVVLLFSPEEVTVTARDVKNKEAAMETSGVVDVKRRSFRGGRLR 59
          MSS AFIFLGLLFAIVV LFS EEVTV ARDVK +EA MET  V DV+R  F GG  R
Sbjct: 1  MSSKAFIFLGLLFAIVV-LFSSEEVTVMARDVKFEEAMMETGEVDDVERHGFGGGHAR 57

[Close]
BLAST of Lag0014871.1 vs. NCBI nr
Match: XP_038888334.1 (glycine-rich protein-like isoform X2 [Benincasa hispida])

HSP 1 Score: 62.4 bits (150), Expect = 2.4e-06
Identity = 42/58 (72.41%), Postives = 43/58 (74.14%), Query Frame = 0 

Query: 1  MSSTAFIFLGLLFAIVVLLFSPEEVTVTARDVKNKEAAMETSGVVDVKRRSFRGGRLR 59
          MSS AFIFLGLLFAIVV LFS EEVTV ARDVK  EA MET  V DV+R  F GG  R
Sbjct: 1  MSSKAFIFLGLLFAIVV-LFSSEEVTVMARDVK-FEAMMETGEVDDVERHGFGGGHAR 56

[Close]
BLAST of Lag0014871.1 vs. NCBI nr
Match: XP_004144531.1 (glycine-rich protein [Cucumis sativus] >KGN43452.1 hypothetical protein Csa_020301 [Cucumis sativus])

HSP 1 Score: 58.2 bits (139), Expect = 4.6e-05
Identity = 35/58 (60.34%), Postives = 41/58 (70.69%), Query Frame = 0 

Query: 1  MSSTAFIFLGLLFAIVVLLFSPEEVTVTARDVKNKEAAMETSGVVDVKRRSFRGGRLR 59
          MSS +FI LGLLFA+V  LFS E +TVTARD K KEA MET  V +V+R S+ G   R
Sbjct: 1  MSSKSFILLGLLFAVV--LFSSEAITVTARDAKLKEATMETGEVDNVERHSYGGAHSR 56

The following BLAST results are available for this feature:
BLAST of Lag0014871.1 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038888333.15.8e-0872.41glycine-rich protein-like isoform X1 [Benincasa hispida][more]
XP_038888334.12.4e-0672.41glycine-rich protein-like isoform X2 [Benincasa hispida][more]
XP_004144531.14.6e-0560.34glycine-rich protein [Cucumis sativus] >KGN43452.1 hypothetical protein Csa_0203... [more]
BLAST of Lag0014871.1 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Lag0014871Lag0014871gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Lag0014871.1.exon2Lag0014871.1.exon2exon
Lag0014871.1.exon1Lag0014871.1.exon1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
cds.Lag0014871.1cds.Lag0014871.1_2CDS
cds.Lag0014871.1cds.Lag0014871.1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Lag0014871.1Lag0014871.1-proteinpolypeptide