Lag0013187.1 (mRNA) Sponge gourd (AG‐4) v1

Overview


Name	Lag0013187.1
Type	mRNA
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Uncharacterised conserved protein UCP031279
Location	chr1: 48179191 .. 48179688 (-)
Sequence length	498
RNA-Seq Expression	Lag0013187.1
Synteny	Lag0013187.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGATTAAAAACGGCGATAAAACAAAGAAGACCAGCAAAGGAAACAAATTGAGCAAACTGATGAAAGCCTCCGGGCGGCTGCTGTCGAAGGTCCGAGATTTTTACGTCAGGAGCCTGACGGAGTGTTCGAACCACCTGGATTATGGGATGGCGCTGGCCGGGCCGGCCGGTCAGGTGCCGGCCCATCTGCCCAAGAGTTACAGCGTGGGGTCCACAGCCTCCAGCAACGGCAGCGACGACTACAGGGAGCTTCTGAAAGTCGCCTCGACTCGAAGCTTGAGCAAGAAGGTGGAGCCCGATTTCCAAATCCAAGCGGCGAGGAAATCGCCGATGGCGGAACCGAGAAACGTGCCGAGGAGCCAGAGCGTTGGGATTGGGAAAATCGACGAGGAGAAAACGTATGAATTTGAAGAGGATTTCAAGGTGAGTAATAAAACTGATGCTTATCCCAGAAGCAGAAGCTACGCTGTTCATAGGAGGAAATGGATGTATTGA

mRNA sequence

ATGGAGATTAAAAACGGCGATAAAACAAAGAAGACCAGCAAAGGAAACAAATTGAGCAAACTGATGAAAGCCTCCGGGCGGCTGCTGTCGAAGGTCCGAGATTTTTACGTCAGGAGCCTGACGGAGTGTTCGAACCACCTGGATTATGGGATGGCGCTGGCCGGGCCGGCCGGTCAGGTGCCGGCCCATCTGCCCAAGAGTTACAGCGTGGGGTCCACAGCCTCCAGCAACGGCAGCGACGACTACAGGGAGCTTCTGAAAGTCGCCTCGACTCGAAGCTTGAGCAAGAAGGTGGAGCCCGATTTCCAAATCCAAGCGGCGAGGAAATCGCCGATGGCGGAACCGAGAAACGTGCCGAGGAGCCAGAGCGTTGGGATTGGGAAAATCGACGAGGAGAAAACGTATGAATTTGAAGAGGATTTCAAGGTGAGTAATAAAACTGATGCTTATCCCAGAAGCAGAAGCTACGCTGTTCATAGGAGGAAATGGATGTATTGA

Coding sequence (CDS)

ATGGAGATTAAAAACGGCGATAAAACAAAGAAGACCAGCAAAGGAAACAAATTGAGCAAACTGATGAAAGCCTCCGGGCGGCTGCTGTCGAAGGTCCGAGATTTTTACGTCAGGAGCCTGACGGAGTGTTCGAACCACCTGGATTATGGGATGGCGCTGGCCGGGCCGGCCGGTCAGGTGCCGGCCCATCTGCCCAAGAGTTACAGCGTGGGGTCCACAGCCTCCAGCAACGGCAGCGACGACTACAGGGAGCTTCTGAAAGTCGCCTCGACTCGAAGCTTGAGCAAGAAGGTGGAGCCCGATTTCCAAATCCAAGCGGCGAGGAAATCGCCGATGGCGGAACCGAGAAACGTGCCGAGGAGCCAGAGCGTTGGGATTGGGAAAATCGACGAGGAGAAAACGTATGAATTTGAAGAGGATTTCAAGGTGAGTAATAAAACTGATGCTTATCCCAGAAGCAGAAGCTACGCTGTTCATAGGAGGAAATGGATGTATTGA

Protein sequence

MEIKNGDKTKKTSKGNKLSKLMKASGRLLSKVRDFYVRSLTECSNHLDYGMALAGPAGQVPAHLPKSYSVGSTASSNGSDDYRELLKVASTRSLSKKVEPDFQIQAARKSPMAEPRNVPRSQSVGIGKIDEEKTYEFEEDFKVSNKTDAYPRSRSYAVHRRKWMY

Homology

[Close]

BLAST of Lag0013187.1 vs. NCBI nr
Match: XP_022978000.1 (uncharacterized protein LOC111478121 [Cucurbita maxima])

HSP 1 Score: 256.1 bits (653), Expect = 2.0e-64
Identity = 135/165 (81.82%), Postives = 147/165 (89.09%), Query Frame = 0


Query: 1   MEIKNGDKTKKTSKGNKLSKLMKASGRLLSKVRDFYVRSLTECSNHLDYGMALAGPAGQV 60
           MEIKNG + KK++K NKLS+L+KAS RLLSKVRDFYVRSLT+CSNHLDYGMAL GP  QV
Sbjct: 1   MEIKNGHQMKKSNKENKLSQLIKASSRLLSKVRDFYVRSLTDCSNHLDYGMALTGPTSQV 60

Query: 61  PAHLPKSYSVGSTASSNGSDDYRELLKVASTRSLSKKVEPDFQIQAARKSPMAEPRNVPR 120
           P  LPKSYSVGST SS+GSDD+RELL+ ASTRSLSK VEPDFQIQAARKSPMAEP NVPR
Sbjct: 61  PTTLPKSYSVGSTVSSHGSDDFRELLRAASTRSLSKNVEPDFQIQAARKSPMAEPNNVPR 120

Query: 121 SQSVGIGKIDEEKTYEFEEDFKVSNKTDAYPRSRSYAVHRRKWMY 166
           SQSVGIG+IDEEKT EFEEDFKV N TDAYPRSRSYAV RR+ +Y
Sbjct: 121 SQSVGIGRIDEEKTCEFEEDFKVCN-TDAYPRSRSYAVRRRRRVY 164

[Close]

BLAST of Lag0013187.1 vs. NCBI nr
Match: XP_023543992.1 (uncharacterized protein LOC111803699 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 253.4 bits (646), Expect = 1.3e-63
Identity = 133/165 (80.61%), Postives = 148/165 (89.70%), Query Frame = 0


Query: 1   MEIKNGDKTKKTSKGNKLSKLMKASGRLLSKVRDFYVRSLTECSNHLDYGMALAGPAGQV 60
           MEIKNG + KK++K NKLS+L+KAS RLLSKVRDFYVRSLT+CSNHLDYGMA+ GP  QV
Sbjct: 1   MEIKNGHQMKKSNKENKLSQLIKASSRLLSKVRDFYVRSLTDCSNHLDYGMAMTGPTSQV 60

Query: 61  PAHLPKSYSVGSTASSNGSDDYRELLKVASTRSLSKKVEPDFQIQAARKSPMAEPRNVPR 120
           P  LPKSYSVGSTASS+GSDD+RELL+ ASTRSLSK +EPD QIQAARKSPMAE +NVPR
Sbjct: 61  PTTLPKSYSVGSTASSHGSDDFRELLRAASTRSLSKNLEPDIQIQAARKSPMAELKNVPR 120

Query: 121 SQSVGIGKIDEEKTYEFEEDFKVSNKTDAYPRSRSYAVHRRKWMY 166
           SQSVGIG+IDEEKT EFEEDFKV N TDAYPRSRSYAVHRR+ +Y
Sbjct: 121 SQSVGIGRIDEEKTCEFEEDFKVCN-TDAYPRSRSYAVHRRRRVY 164

[Close]

BLAST of Lag0013187.1 vs. NCBI nr
Match: XP_022950634.1 (uncharacterized protein LOC111453674 [Cucurbita moschata])

HSP 1 Score: 252.7 bits (644), Expect = 2.2e-63
Identity = 132/165 (80.00%), Postives = 147/165 (89.09%), Query Frame = 0


Query: 1   MEIKNGDKTKKTSKGNKLSKLMKASGRLLSKVRDFYVRSLTECSNHLDYGMALAGPAGQV 60
           MEIKNG + KK++K NKLS+L+KAS RLLSKVRDFYVRSLT+CSNHLDYGMA+ GP  QV
Sbjct: 1   MEIKNGHQMKKSNKENKLSQLIKASSRLLSKVRDFYVRSLTDCSNHLDYGMAMTGPTSQV 60

Query: 61  PAHLPKSYSVGSTASSNGSDDYRELLKVASTRSLSKKVEPDFQIQAARKSPMAEPRNVPR 120
           P  LPKSYSVGST SS+GSDD+RELL+ ASTRSLSK VEPDFQIQ ARKSPMAE +NVPR
Sbjct: 61  PTTLPKSYSVGSTVSSHGSDDFRELLRAASTRSLSKNVEPDFQIQGARKSPMAEVKNVPR 120

Query: 121 SQSVGIGKIDEEKTYEFEEDFKVSNKTDAYPRSRSYAVHRRKWMY 166
           SQSVGIG+IDEEK+ EFEEDFKV N TDAYPRSRSYAVHRR+ +Y
Sbjct: 121 SQSVGIGRIDEEKSCEFEEDFKVCN-TDAYPRSRSYAVHRRRRVY 164

[Close]

BLAST of Lag0013187.1 vs. NCBI nr
Match: KAG7034279.1 (hypothetical protein SDJN02_04006, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 252.3 bits (643), Expect = 2.9e-63
Identity = 132/165 (80.00%), Postives = 147/165 (89.09%), Query Frame = 0


Query: 1   MEIKNGDKTKKTSKGNKLSKLMKASGRLLSKVRDFYVRSLTECSNHLDYGMALAGPAGQV 60
           MEIKNG + KK++K NKLS+L+KAS RLLSKVRDFYVRSLT+CSNHLDYGMA+ GP  QV
Sbjct: 1   MEIKNGHQMKKSNKENKLSQLIKASSRLLSKVRDFYVRSLTDCSNHLDYGMAMTGPTSQV 60

Query: 61  PAHLPKSYSVGSTASSNGSDDYRELLKVASTRSLSKKVEPDFQIQAARKSPMAEPRNVPR 120
           P  LPKSYSVGST SS+GSDD+RELL+ ASTRSLSK VEPDFQIQAARKSPM E +NVPR
Sbjct: 61  PTTLPKSYSVGSTVSSHGSDDFRELLRAASTRSLSKNVEPDFQIQAARKSPMTELKNVPR 120

Query: 121 SQSVGIGKIDEEKTYEFEEDFKVSNKTDAYPRSRSYAVHRRKWMY 166
           SQSVGIG+IDEEK+ EFEEDFKV N TDAYPRSRSYAVHRR+ +Y
Sbjct: 121 SQSVGIGRIDEEKSCEFEEDFKVCN-TDAYPRSRSYAVHRRRRVY 164

[Close]

BLAST of Lag0013187.1 vs. NCBI nr
Match: XP_022132695.1 (uncharacterized protein LOC111005494 [Momordica charantia])

HSP 1 Score: 250.4 bits (638), Expect = 1.1e-62
Identity = 130/162 (80.25%), Postives = 146/162 (90.12%), Query Frame = 0


Query: 1   MEIKNGDKTKKTSKGNKLSKLMKASGRLLSKVRDFYVRSLTECSNHLDYGMALAGPAGQV 60
           M IK G++ KK +KG+KL +L+KASGRLLS+VRDFY+RSLTECSNHLDYGMAL GPAGQ+
Sbjct: 1   MAIKTGNEPKKMNKGSKLRELVKASGRLLSRVRDFYIRSLTECSNHLDYGMALTGPAGQL 60

Query: 61  PAHLPKSYSVGSTASSNGSDDYRELLKVASTRSLSKKVEPDFQIQAARKSPMAEPRNVPR 120
           P HLPKSYSVGSTASS+G DDY ELL+ ASTRSLSKK+EPD  +QAARKSPMA P NVPR
Sbjct: 61  PTHLPKSYSVGSTASSHGGDDYSELLRAASTRSLSKKIEPD--LQAARKSPMAGPNNVPR 120

Query: 121 SQSVGIGKIDEEKTYEFEEDFKVSNKTDAYPRSRSYAVHRRK 163
           SQSVGIG+IDEEKTYEFEEDFK SN +DAYPRSRSYAVHRR+
Sbjct: 121 SQSVGIGRIDEEKTYEFEEDFKPSN-SDAYPRSRSYAVHRRR 159

The following BLAST results are available for this feature:

BLAST of Lag0013187.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022978000.1	2.0e-64	81.82	uncharacterized protein LOC111478121 [Cucurbita maxima]	[more]
XP_023543992.1	1.3e-63	80.61	uncharacterized protein LOC111803699 [Cucurbita pepo subsp. pepo]	[more]
XP_022950634.1	2.2e-63	80.00	uncharacterized protein LOC111453674 [Cucurbita moschata]	[more]
KAG7034279.1	2.9e-63	80.00	hypothetical protein SDJN02_04006, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022132695.1	1.1e-62	80.25	uncharacterized protein LOC111005494 [Momordica charantia]	[more]

BLAST of Lag0013187.1 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR016972	Uncharacterised conserved protein UCP031279	PIRSF	PIRSF031279	UCP031279	coord: 8..164 e-value: 1.6E-25 score: 87.9
None	No IPR available	PANTHER	PTHR33526:SF4	OS07G0123800 PROTEIN	coord: 8..161
None	No IPR available	PANTHER	PTHR33526	OS07G0123800 PROTEIN	coord: 8..161

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lag0013187	Lag0013187	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lag0013187.1.exon1	Lag0013187.1.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.Lag0013187.1	cds.Lag0013187.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lag0013187.1	Lag0013187.1-protein	polypeptide