Lag0013181.1 (mRNA) Sponge gourd (AG‐4) v1

Overview


Name	Lag0013181.1
Type	mRNA
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Uncharacterised conserved protein UCP031279
Location	chr1: 48088608 .. 48089308 (-)
Sequence length	561
RNA-Seq Expression	Lag0013181.1
Synteny	Lag0013181.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGCTCTCTTAACAGCCTCGATTCCTCCCTTGAACCACGGGCCGTCTCAGAGGGAATGGTTGGCCAAACCACTGCTTGTAAGGCCGCAGAGGTCATTCTTCAGATGATTTTTTAGTTTATATACTCTCTTTAGTAATCTCACCATATCTAACAGAGCCCTACATCTATATATACATATAAACCCAACACTGCGACCAATTCTCAACTCAAAATCCTCAAAGTGATCGAAAGCCGTTTTCTTCGTATCCCTCGCCGGCGATTTCACATTTTCAGACGAGCACGGCGGCGAGTGGCAAAAAAGTAACAATGGAGATTAAAAACGGCAATGAAACAAAGAAGACCAGCAAAGGAAACAAATTGAGCAAACTGATGAAAGCCTCCGGGCGGCTGCTGTCGAAGGTCCGAGATTTTTACGTCAGGAGCCTGACGGAGTGTTCGAACCACCTGGATTATGGGATGGCGCTGGCCGGGCCGGCCCATTTGCCCAAGAGTTACAGCGTGGGGTCCACCGGCTCCAGCAACGGCAGCGACGACTACAGGGAGCTTCTGAAAGTCGCCTCGACTCGAAGCTTGAGCAAGAAGGTGGAGCCCCGACTTCCAAATCCAAGCGGCGAGGAAATCGCCGATGGCGGAACCGAGAAACGTGCCGAGGAGCAAGAGCGTTGGGATTGGGAAAATCGACGAGGAGAAAACGTATGA

mRNA sequence

ATGTGCTCTCTTAACAGCCTCGATTCCTCCCTTGAACCACGGGCCGTCTCAGAGGGAATGGTTGGCCAAACCACTGCTTGTAAGGCCGCAGAGCCGTTTTCTTCGTATCCCTCGCCGGCGATTTCACATTTTCAGACGAGCACGGCGGCGAGTGGCAAAAAAGTAACAATGGAGATTAAAAACGGCAATGAAACAAAGAAGACCAGCAAAGGAAACAAATTGAGCAAACTGATGAAAGCCTCCGGGCGGCTGCTGTCGAAGGTCCGAGATTTTTACGTCAGGAGCCTGACGGAGTGTTCGAACCACCTGGATTATGGGATGGCGCTGGCCGGGCCGGCCCATTTGCCCAAGAGTTACAGCGTGGGGTCCACCGGCTCCAGCAACGGCAGCGACGACTACAGGGAGCTTCTGAAAGTCGCCTCGACTCGAAGCTTGAGCAAGAAGGTGGAGCCCCGACTTCCAAATCCAAGCGGCGAGGAAATCGCCGATGGCGGAACCGAGAAACGTGCCGAGGAGCAAGAGCGTTGGGATTGGGAAAATCGACGAGGAGAAAACGTATGA

Coding sequence (CDS)

ATGTGCTCTCTTAACAGCCTCGATTCCTCCCTTGAACCACGGGCCGTCTCAGAGGGAATGGTTGGCCAAACCACTGCTTGTAAGGCCGCAGAGCCGTTTTCTTCGTATCCCTCGCCGGCGATTTCACATTTTCAGACGAGCACGGCGGCGAGTGGCAAAAAAGTAACAATGGAGATTAAAAACGGCAATGAAACAAAGAAGACCAGCAAAGGAAACAAATTGAGCAAACTGATGAAAGCCTCCGGGCGGCTGCTGTCGAAGGTCCGAGATTTTTACGTCAGGAGCCTGACGGAGTGTTCGAACCACCTGGATTATGGGATGGCGCTGGCCGGGCCGGCCCATTTGCCCAAGAGTTACAGCGTGGGGTCCACCGGCTCCAGCAACGGCAGCGACGACTACAGGGAGCTTCTGAAAGTCGCCTCGACTCGAAGCTTGAGCAAGAAGGTGGAGCCCCGACTTCCAAATCCAAGCGGCGAGGAAATCGCCGATGGCGGAACCGAGAAACGTGCCGAGGAGCAAGAGCGTTGGGATTGGGAAAATCGACGAGGAGAAAACGTATGA

Protein sequence

MCSLNSLDSSLEPRAVSEGMVGQTTACKAAEPFSSYPSPAISHFQTSTAASGKKVTMEIKNGNETKKTSKGNKLSKLMKASGRLLSKVRDFYVRSLTECSNHLDYGMALAGPAHLPKSYSVGSTGSSNGSDDYRELLKVASTRSLSKKVEPRLPNPSGEEIADGGTEKRAEEQERWDWENRRGENV

Homology

[Close]

BLAST of Lag0013181.1 vs. NCBI nr
Match: XP_022132695.1 (uncharacterized protein LOC111005494 [Momordica charantia])

HSP 1 Score: 144.4 bits (363), Expect = 9.6e-31
Identity = 84/140 (60.00%), Postives = 101/140 (72.14%), Query Frame = 0


Query: 57  MEIKNGNETKKTSKGNKLSKLMKASGRLLSKVRDFYVRSLTECSNHLDYGMALAGPA--- 116
           M IK GNE KK +KG+KL +L+KASGRLLS+VRDFY+RSLTECSNHLDYGMAL GPA   
Sbjct: 1   MAIKTGNEPKKMNKGSKLRELVKASGRLLSRVRDFYIRSLTECSNHLDYGMALTGPAGQL 60

Query: 117 --HLPKSYSVGSTGSSNGSDDYRELLKVASTRSLSKKVEPRL----------PN--PSGE 176
             HLPKSYSVGST SS+G DDY ELL+ ASTRSLSKK+EP L          PN  P  +
Sbjct: 61  PTHLPKSYSVGSTASSHGGDDYSELLRAASTRSLSKKIEPDLQAARKSPMAGPNNVPRSQ 120

Query: 177 EIADGGTEKRAEEQERWDWE 180
            +  G    R +E++ +++E
Sbjct: 121 SVGIG----RIDEEKTYEFE 136

[Close]

BLAST of Lag0013181.1 vs. NCBI nr
Match: XP_022978000.1 (uncharacterized protein LOC111478121 [Cucurbita maxima])

HSP 1 Score: 142.5 bits (358), Expect = 3.6e-30
Identity = 76/100 (76.00%), Postives = 86/100 (86.00%), Query Frame = 0


Query: 57  MEIKNGNETKKTSKGNKLSKLMKASGRLLSKVRDFYVRSLTECSNHLDYGMALAGPAH-- 116
           MEIKNG++ KK++K NKLS+L+KAS RLLSKVRDFYVRSLT+CSNHLDYGMAL GP    
Sbjct: 1   MEIKNGHQMKKSNKENKLSQLIKASSRLLSKVRDFYVRSLTDCSNHLDYGMALTGPTSQV 60

Query: 117 ---LPKSYSVGSTGSSNGSDDYRELLKVASTRSLSKKVEP 152
              LPKSYSVGST SS+GSDD+RELL+ ASTRSLSK VEP
Sbjct: 61  PTTLPKSYSVGSTVSSHGSDDFRELLRAASTRSLSKNVEP 100

[Close]

BLAST of Lag0013181.1 vs. NCBI nr
Match: KAG7034279.1 (hypothetical protein SDJN02_04006, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 141.7 bits (356), Expect = 6.2e-30
Identity = 75/100 (75.00%), Postives = 86/100 (86.00%), Query Frame = 0


Query: 57  MEIKNGNETKKTSKGNKLSKLMKASGRLLSKVRDFYVRSLTECSNHLDYGMALAGPAH-- 116
           MEIKNG++ KK++K NKLS+L+KAS RLLSKVRDFYVRSLT+CSNHLDYGMA+ GP    
Sbjct: 1   MEIKNGHQMKKSNKENKLSQLIKASSRLLSKVRDFYVRSLTDCSNHLDYGMAMTGPTSQV 60

Query: 117 ---LPKSYSVGSTGSSNGSDDYRELLKVASTRSLSKKVEP 152
              LPKSYSVGST SS+GSDD+RELL+ ASTRSLSK VEP
Sbjct: 61  PTTLPKSYSVGSTVSSHGSDDFRELLRAASTRSLSKNVEP 100

[Close]

BLAST of Lag0013181.1 vs. NCBI nr
Match: XP_023543992.1 (uncharacterized protein LOC111803699 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 141.7 bits (356), Expect = 6.2e-30
Identity = 74/100 (74.00%), Postives = 86/100 (86.00%), Query Frame = 0


Query: 57  MEIKNGNETKKTSKGNKLSKLMKASGRLLSKVRDFYVRSLTECSNHLDYGMALAGPAH-- 116
           MEIKNG++ KK++K NKLS+L+KAS RLLSKVRDFYVRSLT+CSNHLDYGMA+ GP    
Sbjct: 1   MEIKNGHQMKKSNKENKLSQLIKASSRLLSKVRDFYVRSLTDCSNHLDYGMAMTGPTSQV 60

Query: 117 ---LPKSYSVGSTGSSNGSDDYRELLKVASTRSLSKKVEP 152
              LPKSYSVGST SS+GSDD+RELL+ ASTRSLSK +EP
Sbjct: 61  PTTLPKSYSVGSTASSHGSDDFRELLRAASTRSLSKNLEP 100

[Close]

BLAST of Lag0013181.1 vs. NCBI nr
Match: XP_022950634.1 (uncharacterized protein LOC111453674 [Cucurbita moschata])

HSP 1 Score: 141.7 bits (356), Expect = 6.2e-30
Identity = 75/100 (75.00%), Postives = 86/100 (86.00%), Query Frame = 0


Query: 57  MEIKNGNETKKTSKGNKLSKLMKASGRLLSKVRDFYVRSLTECSNHLDYGMALAGPAH-- 116
           MEIKNG++ KK++K NKLS+L+KAS RLLSKVRDFYVRSLT+CSNHLDYGMA+ GP    
Sbjct: 1   MEIKNGHQMKKSNKENKLSQLIKASSRLLSKVRDFYVRSLTDCSNHLDYGMAMTGPTSQV 60

Query: 117 ---LPKSYSVGSTGSSNGSDDYRELLKVASTRSLSKKVEP 152
              LPKSYSVGST SS+GSDD+RELL+ ASTRSLSK VEP
Sbjct: 61  PTTLPKSYSVGSTVSSHGSDDFRELLRAASTRSLSKNVEP 100

The following BLAST results are available for this feature:

BLAST of Lag0013181.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022132695.1	9.6e-31	60.00	uncharacterized protein LOC111005494 [Momordica charantia]	[more]
XP_022978000.1	3.6e-30	76.00	uncharacterized protein LOC111478121 [Cucurbita maxima]	[more]
KAG7034279.1	6.2e-30	75.00	hypothetical protein SDJN02_04006, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_023543992.1	6.2e-30	74.00	uncharacterized protein LOC111803699 [Cucurbita pepo subsp. pepo]	[more]
XP_022950634.1	6.2e-30	75.00	uncharacterized protein LOC111453674 [Cucurbita moschata]	[more]

BLAST of Lag0013181.1 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 162..186
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 144..186
None	No IPR available	PANTHER	PTHR33526	OS07G0123800 PROTEIN	coord: 65..149
None	No IPR available	PANTHER	PTHR33526:SF4	OS07G0123800 PROTEIN	coord: 65..149

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lag0013181	Lag0013181	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lag0013181.1.exon2	Lag0013181.1.exon2	exon
Lag0013181.1.exon1	Lag0013181.1.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.Lag0013181.1	cds.Lag0013181.1_2	CDS
cds.Lag0013181.1	cds.Lag0013181.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lag0013181.1	Lag0013181.1-protein	polypeptide