Lag0012512.1 (mRNA) Sponge gourd (AG‐4) v1

Overview


Name	Lag0012512.1
Type	mRNA
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Serine-rich adhesin for platelets like
Location	chr1: 41781470 .. 41781820 (+)
Sequence length	351
RNA-Seq Expression	Lag0012512.1
Synteny	Lag0012512.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTTCGATTACTGTACCGGCGTCTCCGATCGCGGTGGCCGCTGCTCGTCTACTCCGCCTCCTGGACGATTCTTTTGACGCTCACCGTCGCCGCCGCCTCCTTCGCGCCGGAACTTGCCTTCGCCTCGGCTATTTCGCCGTCGTCGGCTTTTGCCGCAGAGTGCAAGTCCGCTGGATTCGTTAGGGTTCCGATGGATTCTCCGGGCGACGTTCTTTGCGTTCCGGACCATCTCTTTAGGAAATCCGGGATTGATCTGATTGTTCCTCCCATTTTCGCCGCGGTTGTAGTGGCCGGCTCGGCTTGCTTTGTTCGGGCCATGGGCCTTTGGGCCGACGATGACGCCCTTTGA

mRNA sequence

ATGCTTCGATTACTGTACCGGCGTCTCCGATCGCGGTGGCCGCTGCTCGTCTACTCCGCCTCCTGGACGATTCTTTTGACGCTCACCGTCGCCGCCGCCTCCTTCGCGCCGGAACTTGCCTTCGCCTCGGCTATTTCGCCGTCGTCGGCTTTTGCCGCAGAGTGCAAGTCCGCTGGATTCGTTAGGGTTCCGATGGATTCTCCGGGCGACGTTCTTTGCGTTCCGGACCATCTCTTTAGGAAATCCGGGATTGATCTGATTGTTCCTCCCATTTTCGCCGCGGTTGTAGTGGCCGGCTCGGCTTGCTTTGTTCGGGCCATGGGCCTTTGGGCCGACGATGACGCCCTTTGA

Coding sequence (CDS)

ATGCTTCGATTACTGTACCGGCGTCTCCGATCGCGGTGGCCGCTGCTCGTCTACTCCGCCTCCTGGACGATTCTTTTGACGCTCACCGTCGCCGCCGCCTCCTTCGCGCCGGAACTTGCCTTCGCCTCGGCTATTTCGCCGTCGTCGGCTTTTGCCGCAGAGTGCAAGTCCGCTGGATTCGTTAGGGTTCCGATGGATTCTCCGGGCGACGTTCTTTGCGTTCCGGACCATCTCTTTAGGAAATCCGGGATTGATCTGATTGTTCCTCCCATTTTCGCCGCGGTTGTAGTGGCCGGCTCGGCTTGCTTTGTTCGGGCCATGGGCCTTTGGGCCGACGATGACGCCCTTTGA

Protein sequence

MLRLLYRRLRSRWPLLVYSASWTILLTLTVAAASFAPELAFASAISPSSAFAAECKSAGFVRVPMDSPGDVLCVPDHLFRKSGIDLIVPPIFAAVVVAGSACFVRAMGLWADDDAL

Homology

[Close]

BLAST of Lag0012512.1 vs. NCBI nr
Match: XP_022963374.1 (uncharacterized protein LOC111463600 [Cucurbita moschata] >XP_023517164.1 uncharacterized protein LOC111781002 [Cucurbita pepo subsp. pepo] >KAG6595307.1 hypothetical protein SDJN03_11860, partial [Cucurbita argyrosperma subsp. sororia] >KAG7027317.1 hypothetical protein SDJN02_11329, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 209.1 bits (531), Expect = 2.0e-50
Identity = 107/116 (92.24%), Postives = 114/116 (98.28%), Query Frame = 0


Query: 1   MLRLLYRRLRSRWPLLVYSASWTILLTLTVAAASFAPELAFASAISPSSAFAAECKSAGF 60
           MLRLLYRRLRSRWPLLVYSASWTILLTLTVAAASFAPELAFASAISPSS+FA+ CK+AGF
Sbjct: 1   MLRLLYRRLRSRWPLLVYSASWTILLTLTVAAASFAPELAFASAISPSSSFASHCKAAGF 60

Query: 61  VRVPMDSPGDVLCVPDHLFRKSGIDLIVPPIFAAVVVAGSACFVRAMGLWADDDAL 117
           VRVPMD PGDV+CVPD+LFRKSGIDLIVPPIFAAVVVAGSACFVRA+GLWADDD+L
Sbjct: 61  VRVPMDFPGDVVCVPDNLFRKSGIDLIVPPIFAAVVVAGSACFVRALGLWADDDSL 116

[Close]

BLAST of Lag0012512.1 vs. NCBI nr
Match: XP_022972738.1 (uncharacterized protein LOC111471253 [Cucurbita maxima])

HSP 1 Score: 207.2 bits (526), Expect = 7.5e-50
Identity = 106/116 (91.38%), Postives = 114/116 (98.28%), Query Frame = 0


Query: 1   MLRLLYRRLRSRWPLLVYSASWTILLTLTVAAASFAPELAFASAISPSSAFAAECKSAGF 60
           MLRLLYRRLRSRWPLLVYSASWTILLTLTVAAASFAPELAFASAISPSS+FA+ CK+AGF
Sbjct: 1   MLRLLYRRLRSRWPLLVYSASWTILLTLTVAAASFAPELAFASAISPSSSFASHCKAAGF 60

Query: 61  VRVPMDSPGDVLCVPDHLFRKSGIDLIVPPIFAAVVVAGSACFVRAMGLWADDDAL 117
           VRVPM+ PGDV+CVPD+LFRKSGIDLIVPPIFAAVVVAGSACFVRA+GLWADDD+L
Sbjct: 61  VRVPMNFPGDVVCVPDNLFRKSGIDLIVPPIFAAVVVAGSACFVRALGLWADDDSL 116

[Close]

BLAST of Lag0012512.1 vs. NCBI nr
Match: XP_038883336.1 (uncharacterized protein LOC120074319 [Benincasa hispida])

HSP 1 Score: 204.5 bits (519), Expect = 4.9e-49
Identity = 106/116 (91.38%), Postives = 109/116 (93.97%), Query Frame = 0


Query: 1   MLRLLYRRLRSRWPLLVYSASWTILLTLTVAAASFAPELAFASAISPSSAFAAECKSAGF 60
           MLR LYRRL+SRWPLLVYSASWTILLTLTVAAASFAPELAFASAISPSS+F A CKS G 
Sbjct: 1   MLRFLYRRLKSRWPLLVYSASWTILLTLTVAAASFAPELAFASAISPSSSFTAHCKSDGL 60

Query: 61  VRVPMDSPGDVLCVPDHLFRKSGIDLIVPPIFAAVVVAGSACFVRAMGLWADDDAL 117
           VRVPMD PGDVLCVPD LFRKSGIDLIVPPIFAAVVVAGSACFVRA+GLWADDDAL
Sbjct: 61  VRVPMDIPGDVLCVPDRLFRKSGIDLIVPPIFAAVVVAGSACFVRALGLWADDDAL 116

[Close]

BLAST of Lag0012512.1 vs. NCBI nr
Match: XP_004142209.1 (uncharacterized protein LOC101207834 [Cucumis sativus] >KGN54232.1 hypothetical protein Csa_018146 [Cucumis sativus])

HSP 1 Score: 203.8 bits (517), Expect = 8.3e-49
Identity = 105/114 (92.11%), Postives = 109/114 (95.61%), Query Frame = 0


Query: 1   MLRLLYRRLRSRWPLLVYSASWTILLTLTVAAASFAPELAFASAISPSSAFAAECKSAGF 60
           MLR LYRRLRSRWPLLV+SASWT+LLTLTVAAASFAPELAFASAISPSS+FAAECKS G 
Sbjct: 1   MLRFLYRRLRSRWPLLVFSASWTLLLTLTVAAASFAPELAFASAISPSSSFAAECKSDGL 60

Query: 61  VRVPMDSPGDVLCVPDHLFRKSGIDLIVPPIFAAVVVAGSACFVRAMGLWADDD 115
           VRVPMD PGDVLCVPD LFRKSGIDLIVPPIFAAVVVAGSACFVRA+GLWADDD
Sbjct: 61  VRVPMDIPGDVLCVPDRLFRKSGIDLIVPPIFAAVVVAGSACFVRALGLWADDD 114

[Close]

BLAST of Lag0012512.1 vs. NCBI nr
Match: KAA0032619.1 (uncharacterized protein E6C27_scaffold184G00030 [Cucumis melo var. makuwa] >TYK23500.1 uncharacterized protein E5676_scaffold500G00020 [Cucumis melo var. makuwa])

HSP 1 Score: 201.8 bits (512), Expect = 3.2e-48
Identity = 104/114 (91.23%), Postives = 109/114 (95.61%), Query Frame = 0


Query: 1   MLRLLYRRLRSRWPLLVYSASWTILLTLTVAAASFAPELAFASAISPSSAFAAECKSAGF 60
           MLR LYRRLRSRWPLLV+SASWT+LLTLTVAAASFAPELAFASAISPSS+FAAECKS G 
Sbjct: 1   MLRFLYRRLRSRWPLLVFSASWTLLLTLTVAAASFAPELAFASAISPSSSFAAECKSDGL 60

Query: 61  VRVPMDSPGDVLCVPDHLFRKSGIDLIVPPIFAAVVVAGSACFVRAMGLWADDD 115
           VRVPMD PGDVLCVPD LFRKSGIDLIVPPIFAAVVVAGSACFVRA+GLWADD+
Sbjct: 61  VRVPMDIPGDVLCVPDRLFRKSGIDLIVPPIFAAVVVAGSACFVRALGLWADDN 114

The following BLAST results are available for this feature:

BLAST of Lag0012512.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022963374.1	2.0e-50	92.24	uncharacterized protein LOC111463600 [Cucurbita moschata] >XP_023517164.1 unchar...	[more]
XP_022972738.1	7.5e-50	91.38	uncharacterized protein LOC111471253 [Cucurbita maxima]	[more]
XP_038883336.1	4.9e-49	91.38	uncharacterized protein LOC120074319 [Benincasa hispida]	[more]
XP_004142209.1	8.3e-49	92.11	uncharacterized protein LOC101207834 [Cucumis sativus] >KGN54232.1 hypothetical ...	[more]
KAA0032619.1	3.2e-48	91.23	uncharacterized protein E6C27_scaffold184G00030 [Cucumis melo var. makuwa] >TYK2...	[more]

BLAST of Lag0012512.1 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34658:SF2	OS01G0151800 PROTEIN	coord: 3..114
None	No IPR available	PANTHER	PTHR34658	OS01G0151800 PROTEIN	coord: 3..114

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lag0012512	Lag0012512	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lag0012512.1.exon1	Lag0012512.1.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.Lag0012512.1	cds.Lag0012512.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lag0012512.1	Lag0012512.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane