Lag0012059.1 (mRNA) Sponge gourd (AG‐4) v1

Overview


Name	Lag0012059.1
Type	mRNA
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	chr1: 36947854 .. 36953723 (+)
Sequence length	1212
RNA-Seq Expression	Lag0012059.1
Synteny	Lag0012059.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGGTGAAGCTCCAAGTCTTGATCATCTCAGAGTATTTTGTTGTTTAGCTTATGCTCATGTTAAGGAAGAAAAGCTGAAGAAGAGAGCATTGAAATGTATGTTTATTGGCTACCCTCAAGGTATCAAAGGATATAAGATTTGGTGCTTAGAAGAAGGTAGAAGTAAATGTATAATTAGCAAAGATGTCACTTTCAATGAAGATGAGATGTCATTTTGTAGTAAAAGCCAATCAGAACTGCGATCAGTTGAAAATGTTGAAATAGAAGTCAGAATTGAGTCTGAAACCCGATCATCAGCTACTAGAGGTGAATCTAGTGATGGTTCACAGTTGGGTTCACAAGCAGAGTCTTCACAACGGTTTGAATCTGATGGTATATAGAACTTTGATTGATGAGGGAGCTTTCACTAAAGAAAGTTCATGTAACAATGACCTGCAATATTATTAGCTTGCACGTGATAGATCTCAGAGAGTGAGACAGGAACCTAGCTACTAGGTATGATTTTGCTGACTTGATTGCTTTTGCTTTGAATTGTGCTTCTGATAATATTGAGGTAGAGTCTATTACATTCGAAGAGGCTATTGAGTTTGGGTTGAAGGAACAGTGGAAAGCTGCAATGGAAGAAGAATTGTCCTCTTTGCATAAGAATCAGATGTGGTCATTGGTTCCAAATGTTGGATCGGTATGGCAACCCTAGAGGGGGGTGAATAGGGTTTAATAAAACTTTTTCCTAAAATGACTCAATTAAACTAATTAACACACTTTTTATAAGCAATAAGAGAAATTTCAATATATGCAACAAATAAGAACAAACTAAAGCATGCAATAGATTCTTAAATTAATTGCAAAAATAAAAAGGAGAGAGTTAGAGAAGAAGACACCGTAATTTTTATAGTGGTTCGGTCAAACTCGACCTACTCCACTCCCCAAGCGCCTCTTGGGAATTTGAATAAAAACCTTTCGACTCTTTCCACGGATTAGAGTCCAACCGTTACACCACCGCTCCTTTTACGGGTTCAAGAGCAAACCCGATCCTTTCCACGGGTTAGGATCAAACCGTTACAAGTGATGAAATTTTTGGATAACACAATACAACTCTCAATAGAGTAGATTTACAAATTTGACCACTCAATAAAAGTATCCTCACAATACAATAACACTCTCTCAAGAATAAGATGAAAAGAAAAATTTTGGGAGCTTGGAGAGAGCAACAATGGAAACTTTTGAGTTTTGGAGGATTGTAAAATTGTAAAATTGTTGGTAAAAATTTGGGGAGGAAGATGAGTTTAAAAAGAGAGGGAAATGGGGTAAAAAGTAAATTTAAATTTGGACCATTGGATTTGAAGATAAAGAAAAATTAAGGGTGGAGATTAAAAGAAATTTAAAAGAAAAAGAATAAATATAAAATATATAATTAAAATAAATTATTTATTATTATTTTTAAAACAAAACAAACGGTAACTTGTTTTTTTTAATATAATAATAATAATAATAATAATAATAATATATATATATATATATATAAATAAGTTAACGGTAAAAAAAAATTCAAAATATAATATATATATAATTTTTTAAACACCAACAGTAAAACAGCATTTAATGCTTTCAAATATTTTTGTTTTTTTTACTAAAGAAATATATATATATATATATATATATATATATATATATAATATTTTAAATAACCAAAAGCCCCACATGTCACTCTCCCATCGCTCCACGTGTCGTCTTCGGATTGGTCCATGATGCTGACTCAGCTGCCACGTCATCACTACCGGTATATTTCGTTAAAGCTTGTTTCGGCTATAACTTTTTCGTTTTAGCTCCGATTTGAGTGATTCAAGAGGCGTTAGAATCGTTGTTCCGAGCTCTACGCTATGGGCACATTAAAACACTAAAATTTTCAGTAATTAAAAATTGAGTTTGTTATCATCAAAACATTGATTAATTAATTAATTAAAATTAATTAATCTGAGATTAAGGGCCAAAAAGCCAACACCAAGGCCTCCTAAATAGAAACTCATTCAATCAAAGTGGATTTATAAAATCAAGTCAGGTACAGGGAAGTAACAGCAAGCATAGGTGTAAAGCTACTAGTAGCAAAATGGCTACACTCAAAAGGAGGGAGTTGATTATAATGAGGTTTTCTCTCTGGTGGTAAGACATTTGTCTATTCGATTAGTTTTGTCTATTGTTGTTCACTTTGATATGTTTCTTGAACATATGGATGCCATTATAGCATTCCTTCATGGAGAATTGGAGAAGGTGATTTACATGGCTCAACCAAAGGGCTATGAGGTGAAGGGAAAGGAAGATATGGTTTGTCTCCTTTACAAGTCTATTTATGGACTAAAGCAATCACCAAGACAGTGGTATATTCGCTCTCATACCAATTGTTATGAGTGCAACCAAAGTCCCACATTGGCTAGACAAGAGGATGATCATAAGTATATAAGAGGGGACAAGTATCTCCATTGGTATGAGGCCTTTTGGGTGGAACCAAAAACAAAACCATGAGCGAGCTTATGCCCAAAGTGGACAATATCATACCATTGTGGAGATCTATGTCGTGTCCTCGTCCCTTACATCCTCAAATTGTCAATTTTGTGCTTAATATATCTCTGAACTTTAATAAGTATCTAATAGATCTTTAAACTTTCACTTTTGTGTCCAATAGTCCCTTAATTTTCAATTTTGTATCTAATAAGTCTGACCTATTTAACGTTTTAGACACAAAATTGAAAGTTGAGGGACTTATTAGACATTTTTAAAGTTTAGGGACTTATTAGCCACAATTGAAAGTTCAAGGACTTATTAGACATCTTTTAAAGTCCAAGACCAAATTGACACAACCTTCAAAGTTCAGGGACTAAACTTGTAATTCAAACTAATGGATAACAACAAAACAAAAAAAAAAAAAAAAAAAAAAAAGTTAAGAAATGGTTGCAAAGTTCTCACAACTTGTATATATAATCATAAGTATGTATACTAACTTAAAACATATATAAAATTGGATGGTTATAAGATATTTAATATCCTACTTAGATAACCACTCTATTTTAAAATTCACAACTTTTGGATATATATTTGAACTTCAAAGCTTCGACCCTTTTTTTGGCATTCGACAAATTGATCGTGGGTTTGGTTTAGTTGGTTTTTTAAATACAAATATTTTAAAATGTTTGATTTATATTGATAGGAAAATTTAAAAGTGTGTATATCAGTATGGAGGGGTTAAAACGGGGTGATAAGAATTCAAGGTGGTTCATACAAACATTTCTTATTTTAAATCCATGTTTTTGAGACTACGAGAAAATTTCTAGTACTACGGTGGTATGGAAAATTTTCCATACTACCTCCATTAATTGTTTGCTATGTAAGTAGTATTTAAGAATGATGTGGGACCCATAGAATAAAATATTATATTATTAAATGCTCATTAAATGACGTGTCAAATGTTGAATGAAGGGAGTAGGTACTACTACTAGAAATTTTCCGTGAGACTACTAGCCCTGATAGAAGTCAAATTAATGAAGCTCTTAAATGTGTGCAACCAAAAGTTTCACAAAATATGAATAGAATTTTATTAGCCCATTTTTCAATGGTTGACGTGGAGAGGGTAGTTAATCAAATGTTTCCTACCAAAGCTCCGGGCATGATGATTTTCCATCCCCTTTTTTATAAAAAAAAATATTGGAATATTGTGGGTCCGAAAATCATTGTTGATTGTTTGGATGTCTTAAATAATAACAAAAGTGTTGAATCTTGGAACAATACAAATATAGTCTTAATCCCTAAAGTCCATAATACTATAGAAGTGTGAGATTAGTTTGTGTAATGTTAATTACAGGATAGTAACTAAGACTATTGCTAATCGACTTAAGATTGTATTGAAAGACATCATTTCTACTCCTCAATTGACTTTTTATACAGGGTAGGATGGATTTCTGATAACATCTTAATTGGTCAGGAATGTATTCATGCTATTATAGGAATAATAAAACCCTTATTAGAAACCTGGCAACCCTCAAAGCTTGATTTAAGTAAGGCTTATGACCGTGTCGAATGGTCTTATCTTAAAGAAATCATGATTAAGCTTGGTTTTGAATTGAAATGGTGTCTCTTATTGTGGGTTGTATTTCTACAGCTAAGTTTTCTGTTTTGGTTAATAGAGAACCTAAAGGCTACTTTTATTCTAGTCGGGGCCTTCGTCAAAGAGATCTGTTATCACTCTAGTTATTTTTATTAGTGGTTGAAGGTTTATCATGTCTCTTATCGGAGGCTAGCAATAGTGGAAAACTATCTGGTGTTTCTTGTTCTCAAACTAGTCCAACTATTTCTCATTTACTATTTACTGATGATAGCTTAGTTTTCTGTAAAGCAGAAGAGCGGGAGTTGGTTTTTTCGAAAAGCTTATAAAAGATATATGAGCTTTTTCAAAATCAACCAATGTTGTTTTCACAAAAATTAGGGAGTGATAGAAAAAGGGTTTTTGAGTAGTATTTTGGGGGTTAAACATGTTGAGGGTCTGGGCAATTATCTTGGAGTCCCTTCTATTTTATCTAGGGAAAAAGTCCAAGGATTTTGGGTTTATAATGACTAAGGTATGGAAAGGTTGGAAAAGGTTTTTCTTTTCAGTGGCCGGTAAAGAAATACTTATTAAAAGTGTAGGACAAGCAATTCCATCATATGTTATGAGCTCTTTTAAACTCCCCAAGCGTACATGTGAAGAAATCACAATAAGTTTTGCTCGATTTTGGTGGGGTTCAAATGAATCAAAGAGGAAGATGCATTAGTATAAATGGAAGAAACTTTGTCTTCCTAAATCTCTTGGAGGTTTGAATTTTAGGGATGTTGAGGGCTTTAATCAGGCTTTAATTGCTAAACAAGTGTGGAGGCTTTTAGTTGATCCTATGTCTTTGACTTCTAGGTTTTTAAAAAGTATCTACTTTATGAATTGTAATATACTTGAGGTTGAGTTAGGAAGGAAGCCCTCTTATCTATGGGAAGAGCTTATTATGGAGTAGAGATTTGCTTAAACAAGGTATACGTTATAGAGTGGGGAATGGAAAGTCTGTTTTTATGTTTAAAGATCCTTAGTTACCTAAGGAGTCAACTTTTAAATCAATCTGTGTTAATTGGGATGTTTTCCAAGAGAACGTTTCTTTTTTCATGACTTCTCTTCTTGTGAATGGAATTATGATTTGTTAAAAGTTTTTGTGATGAAGGAAGACTTAGAAACTATTGGGAAAATTCCTATTAATTTGAATGCTATCGATAGATTTGTGTGACATTATGATAAATTGGGGAAATATATTGTAAAAAGTGGCTATAATCTTTTTATGAAAGAACAAAATAAAAATAAGAGCAAGTTCTTCTAATAGTGATATTATGAACAATGTATGGTCAAATCTATGGAAATTGAAGATTCCAATTAAAGTCAAGCATTTTTGCTAGAAAGTTATCAATGGAATCTTATCTTCAAAAGAGAGGAATTCAAATTTGAATAGAATACCCAATTTGTTCAACAAACACTACAAGATTTTTGGTCTACACCAACGCACATTGCGTCGACCTTGATAATCTGAAATTGTTGGTTTGATTGATCTACGCCGACGCAATCGTCCGGACGACAAGGTCCTGGTTTTTTTTTTCGTTTCATATATGCATGCAGTTATACGCCGACGTCAGGTCCTGCGTCGACGTAGATAACGTCGGCGTATCTCAAAATTCTTGTAGTGAAAAGCAAAGGCAACAAATCCATGTTCTTTTTGGCTGTAAAAGAGCTAAAGAAGTTTGGGATCTTACTTTTCAGCATGATATTCTAAAGGTCGATTTCAATCAAAGCTTTGTGGATAAATAG

mRNA sequence

ATGGAAGGTGAAGCTCCAAGTCTTGATCATCTCAGAGTATTTTGTTGTTTAGCTTATGCTCATGTTAAGGAAGAAAAGCTGAAGAAGAGAGCATTGAAATGTATGTTTATTGGCTACCCTCAAGGTATCAAAGGATATAAGATTTGGTGCTTAGAAGAAGGTAGAAGTAAATGTATAATTAGCAAAGATGTCACTTTCAATGAAGATGAGATGTCATTTTGTAGTAAAAGCCAATCAGAACTGCGATCAGTTGAAAATGTTGAAATAGAAGTCAGAATTGAGTCTGAAACCCGATCATCAGCTACTAGAGGTGAATCTAGTGATGGTTCACAGTTGGGTTCACAAGCAGAGTCTTCACAACGGTTTGAATCTGATGAGTCTATTACATTCGAAGAGGCTATTGAGTTTGGGTTGAAGGAACAGTGGAAAGCTGCAATGGAAGAAGAATTGTCCTCTTTGCATAAGAATCAGATGTGGTCATTGGTTCCAAATGTTGGATCGCAAAATGGCTACACTCAAAAGGAGGGAGTTGATTATAATGAGGTTTTCTCTCTGGTGGTAAGACATTTGTCTATTCGATTAGTTTTGTCTATTGTTGTTCACTTTGATATGTTTCTTGAACATATGGATGCCATTATAGCATTCCTTCATGGAGAATTGGAGAAGGTGATTTACATGGCTCAACCAAAGGGCTATGAGGTGAAGGGAAAGGAAGATATGGTTTGTCTCCTTTACAAGTCTATTTATGGACTAAAGCAATCACCAAGACAGTGGTATATTCGCTCTCATACCAATTGTTATGAGTGCAACCAAAGTCCCACATTGGCTAGACAAGAGGATGATCATAAGTATATAAGAGGGGACAAGTATCTCCATTGGATAGTAACTAAGACTATTGCTAATCGACTTAAGATTGTATTGAAAGACATCATTTCTACTCCTCAATTGACTTTTTATACAGGGAAGGAAGCCCTCTTATCTATGGGAAGAGCTTATTATGGAGTAGAGATTTGCTTAAACAAGTTATACGCCGACGTCAGGTCCTGCGTCGACGTAGATAACGTCGGCGTATCTCAAAATTCTTGTAGTGAAAAGCAAAGGCAACAAATCCATGTTCTTTTTGGCTGTAAAAGAGCTAAAGAAGTTTGGGATCTTACTTTTCAGCATGATATTCTAAAGGTCGATTTCAATCAAAGCTTTGTGGATAAATAG

Coding sequence (CDS)

ATGGAAGGTGAAGCTCCAAGTCTTGATCATCTCAGAGTATTTTGTTGTTTAGCTTATGCTCATGTTAAGGAAGAAAAGCTGAAGAAGAGAGCATTGAAATGTATGTTTATTGGCTACCCTCAAGGTATCAAAGGATATAAGATTTGGTGCTTAGAAGAAGGTAGAAGTAAATGTATAATTAGCAAAGATGTCACTTTCAATGAAGATGAGATGTCATTTTGTAGTAAAAGCCAATCAGAACTGCGATCAGTTGAAAATGTTGAAATAGAAGTCAGAATTGAGTCTGAAACCCGATCATCAGCTACTAGAGGTGAATCTAGTGATGGTTCACAGTTGGGTTCACAAGCAGAGTCTTCACAACGGTTTGAATCTGATGAGTCTATTACATTCGAAGAGGCTATTGAGTTTGGGTTGAAGGAACAGTGGAAAGCTGCAATGGAAGAAGAATTGTCCTCTTTGCATAAGAATCAGATGTGGTCATTGGTTCCAAATGTTGGATCGCAAAATGGCTACACTCAAAAGGAGGGAGTTGATTATAATGAGGTTTTCTCTCTGGTGGTAAGACATTTGTCTATTCGATTAGTTTTGTCTATTGTTGTTCACTTTGATATGTTTCTTGAACATATGGATGCCATTATAGCATTCCTTCATGGAGAATTGGAGAAGGTGATTTACATGGCTCAACCAAAGGGCTATGAGGTGAAGGGAAAGGAAGATATGGTTTGTCTCCTTTACAAGTCTATTTATGGACTAAAGCAATCACCAAGACAGTGGTATATTCGCTCTCATACCAATTGTTATGAGTGCAACCAAAGTCCCACATTGGCTAGACAAGAGGATGATCATAAGTATATAAGAGGGGACAAGTATCTCCATTGGATAGTAACTAAGACTATTGCTAATCGACTTAAGATTGTATTGAAAGACATCATTTCTACTCCTCAATTGACTTTTTATACAGGGAAGGAAGCCCTCTTATCTATGGGAAGAGCTTATTATGGAGTAGAGATTTGCTTAAACAAGTTATACGCCGACGTCAGGTCCTGCGTCGACGTAGATAACGTCGGCGTATCTCAAAATTCTTGTAGTGAAAAGCAAAGGCAACAAATCCATGTTCTTTTTGGCTGTAAAAGAGCTAAAGAAGTTTGGGATCTTACTTTTCAGCATGATATTCTAAAGGTCGATTTCAATCAAAGCTTTGTGGATAAATAG

Protein sequence

MEGEAPSLDHLRVFCCLAYAHVKEEKLKKRALKCMFIGYPQGIKGYKIWCLEEGRSKCIISKDVTFNEDEMSFCSKSQSELRSVENVEIEVRIESETRSSATRGESSDGSQLGSQAESSQRFESDESITFEEAIEFGLKEQWKAAMEEELSSLHKNQMWSLVPNVGSQNGYTQKEGVDYNEVFSLVVRHLSIRLVLSIVVHFDMFLEHMDAIIAFLHGELEKVIYMAQPKGYEVKGKEDMVCLLYKSIYGLKQSPRQWYIRSHTNCYECNQSPTLARQEDDHKYIRGDKYLHWIVTKTIANRLKIVLKDIISTPQLTFYTGKEALLSMGRAYYGVEICLNKLYADVRSCVDVDNVGVSQNSCSEKQRQQIHVLFGCKRAKEVWDLTFQHDILKVDFNQSFVDK

Homology

[Close]

BLAST of Lag0012059.1 vs. NCBI nr
Match: TYK13826.1 (putative polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 305.8 bits (782), Expect = 5.4e-79
Identity = 178/353 (50.42%), Postives = 209/353 (59.21%), Query Frame = 0


Query: 3   GEAPSLDHLRVFCCLAYAHVKEEKLKKRALKCMFIGYPQGIKGYKIWCLEEGRSKCIISK 62
           G+APSL+HLRVF C AYAHVK+ KL KRALKCMFIGYPQG+KGYK+WC+E+G +KCIIS+
Sbjct: 467 GKAPSLEHLRVFGCTAYAHVKDGKLNKRALKCMFIGYPQGVKGYKLWCIEKGMNKCIISR 526

Query: 63  DVTFNEDEMSFCSKSQSELRSVENVEIEVRIESETRSS---------------------- 122
           DVTFNE EM +C K Q + ++ ++V  EVRI SE R S                      
Sbjct: 527 DVTFNETEMPYCVKEQQKQQTGDHVVTEVRIASEVRPSIDLDNQPPLVSEIEDTQQSEFD 586

Query: 123 --------------ATRGESSDGSQLGSQAESSQRFESD--------------------- 182
                         A   ESS  + L +   +  R + +                     
Sbjct: 587 GIQSQQERILIDEGAFIEESSSNNDLQNYQLTRDRVQRERHAPIRYGYADLVAYALTCAA 646

Query: 183 -----ESITFEEAIEFGLKEQWKAAMEEELSSLHKNQMWSLVPNVGSQ------------ 242
                E +TFEEAI    K+QWK AMEEEL SLHKNQ WSLVP   +Q            
Sbjct: 647 DSIEAEPLTFEEAIVSDSKKQWKDAMEEELFSLHKNQTWSLVPKPPNQKLIQSKWIYKIK 706

Query: 243 -----------------NGYTQKEGVDYNEVFSLVVRHLSIRLVLSIVVHFDMFLEHMDA 265
                             GYTQKEGVD++E+FS VVRH SIRL+LSI VHFDMF+E MD 
Sbjct: 707 PGTGGNSKPRYKARLVAKGYTQKEGVDFHEIFSPVVRHSSIRLILSIAVHFDMFIEQMDV 766

[Close]

BLAST of Lag0012059.1 vs. NCBI nr
Match: TYK25306.1 (putative gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 305.8 bits (782), Expect = 5.4e-79
Identity = 178/353 (50.42%), Postives = 209/353 (59.21%), Query Frame = 0


Query: 3   GEAPSLDHLRVFCCLAYAHVKEEKLKKRALKCMFIGYPQGIKGYKIWCLEEGRSKCIISK 62
           G+APSL+HLRVF C AYAHVK+ KL KRALKCMFIGYPQG+KGYK+WC+E+G +KCIIS+
Sbjct: 637 GKAPSLEHLRVFGCTAYAHVKDGKLNKRALKCMFIGYPQGVKGYKLWCIEKGMNKCIISR 696

Query: 63  DVTFNEDEMSFCSKSQSELRSVENVEIEVRIESETRSS---------------------- 122
           DVTFNE EM +C K Q + ++ ++V  EVRI SE R S                      
Sbjct: 697 DVTFNETEMPYCVKEQQKQQTGDHVVTEVRIASEVRPSIDLDNQPPLVSEIEDTQQSEFD 756

Query: 123 --------------ATRGESSDGSQLGSQAESSQRFESD--------------------- 182
                         A   ESS  + L +   +  R + +                     
Sbjct: 757 GIQSQQERILIDEGAFIEESSSNNDLQNYQLTRDRVQRERHAPIRYGYADLVAYALTCAA 816

Query: 183 -----ESITFEEAIEFGLKEQWKAAMEEELSSLHKNQMWSLVPNVGSQ------------ 242
                E +TFEEAI    K+QWK AMEEEL SLHKNQ WSLVP   +Q            
Sbjct: 817 DSIEAEPLTFEEAIVSDSKKQWKDAMEEELFSLHKNQTWSLVPKPPNQKLIQSKWIYKIK 876

Query: 243 -----------------NGYTQKEGVDYNEVFSLVVRHLSIRLVLSIVVHFDMFLEHMDA 265
                             GYTQKEGVD++E+FS VVRH SIRL+LSI VHFDMF+E MD 
Sbjct: 877 PGTGGNSKPRYKARLVAKGYTQKEGVDFHEIFSPVVRHSSIRLILSIAVHFDMFIEQMDV 936

[Close]

BLAST of Lag0012059.1 vs. NCBI nr
Match: KAA0050719.1 (putative gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 305.8 bits (782), Expect = 5.4e-79
Identity = 178/353 (50.42%), Postives = 209/353 (59.21%), Query Frame = 0


Query: 3   GEAPSLDHLRVFCCLAYAHVKEEKLKKRALKCMFIGYPQGIKGYKIWCLEEGRSKCIISK 62
           G+APSL+HLRVF C AYAHVK+ KL KRALKCMFIGYPQG+KGYK+WC+E+G +KCIIS+
Sbjct: 637 GKAPSLEHLRVFGCTAYAHVKDGKLNKRALKCMFIGYPQGVKGYKLWCIEKGMNKCIISR 696

Query: 63  DVTFNEDEMSFCSKSQSELRSVENVEIEVRIESETRSS---------------------- 122
           DVTFNE EM +C K Q + ++ ++V  EVRI SE R S                      
Sbjct: 697 DVTFNETEMPYCVKEQQKQQTGDHVVTEVRIASEVRPSIDLDNQPPLVSEIEDTQQSEFD 756

Query: 123 --------------ATRGESSDGSQLGSQAESSQRFESD--------------------- 182
                         A   ESS  + L +   +  R + +                     
Sbjct: 757 GIQSQQERILIDEGAFIEESSSNNDLQNYQLTRDRVQRERHAPIRYGYADLVAYALTCAA 816

Query: 183 -----ESITFEEAIEFGLKEQWKAAMEEELSSLHKNQMWSLVPNVGSQ------------ 242
                E +TFEEAI    K+QWK AMEEEL SLHKNQ WSLVP   +Q            
Sbjct: 817 DSIEAEPLTFEEAIVSDSKKQWKDAMEEELFSLHKNQTWSLVPKPPNQKLIQSKWIYKIK 876

Query: 243 -----------------NGYTQKEGVDYNEVFSLVVRHLSIRLVLSIVVHFDMFLEHMDA 265
                             GYTQKEGVD++E+FS VVRH SIRL+LSI VHFDMF+E MD 
Sbjct: 877 PGTGGNSKPRYKARLVAKGYTQKEGVDFHEIFSPVVRHSSIRLILSIAVHFDMFIEQMDV 936

[Close]

BLAST of Lag0012059.1 vs. NCBI nr
Match: KAA0043826.1 (putative gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 276.2 bits (705), Expect = 4.6e-70
Identity = 165/329 (50.15%), Postives = 195/329 (59.27%), Query Frame = 0


Query: 3   GEAPSLDHLRVFCCLAYAHVKEEKLKKRALKCMFIGYPQGIKGYKIWCLEEGRSKCIISK 62
           G+APSL+HLRVF C AYAHVK+ KL KRALKC+FIGYPQG+KGYK+WC+E+G +KCIIS+
Sbjct: 527 GKAPSLEHLRVFGCTAYAHVKDGKLNKRALKCIFIGYPQGVKGYKLWCIEKGMNKCIISR 586

Query: 63  DVTFNEDEMSFCSKSQSELRSVENVEIEVRIESETRSS---------------------- 122
           DVTFNE EM +C K Q + ++ ++V  EVRI SE R S                      
Sbjct: 587 DVTFNETEMPYCVKEQQKQQTGDHVVTEVRIASEVRPSIDLDNQPPLVSEIEDTQQSEFD 646

Query: 123 --------------ATRGESSDGSQLGSQAESSQRFESD--------------------- 182
                         A   ESS  + L +   +  R + +                     
Sbjct: 647 GIQSQQERILIDEGAFIEESSSNNDLQNYQLTRDRVQRERHAPIRYGYADLVAYALTCAA 706

Query: 183 -----ESITFEEAIEFGLKEQWKAAMEEELSSLHKNQMWSLVPNVGSQNGYTQKEGVDYN 242
                E +TFEEAI    K+QWK AMEEEL SLHKNQ WSLVP   +Q     K    + 
Sbjct: 707 DSIEAEPLTFEEAIVSDSKKQWKDAMEEELFSLHKNQTWSLVPKPPNQKLIQSK----WI 766

Query: 243 EVFSLVVRHLSIRLVLSIVVHFDMFLEHMDAIIAFLHGELEKVIYMAQPKGYEVKGKE-- 265
                VVRH SIRL+LSI VHFDMF+E MD    FLHGELE+VIYMAQPKGYEVKGKE  
Sbjct: 767 YKIKPVVRHSSIRLILSIAVHFDMFIEQMDVTTTFLHGELEEVIYMAQPKGYEVKGKEDM 826

[Close]

BLAST of Lag0012059.1 vs. NCBI nr
Match: KAA0047995.1 (retrotransposon protein, putative, Ty1-copia sub-class [Cucumis melo var. makuwa])

HSP 1 Score: 270.4 bits (690), Expect = 2.5e-68
Identity = 162/330 (49.09%), Postives = 191/330 (57.88%), Query Frame = 0


Query: 3   GEAPSLDHLRVFCCLAYAHVKEEKLKKRALKCMFIGYPQGIKGYKIWCLEEGRSKCIISK 62
           G+APSL+HLRVF C AYAHVK+ KL KRALKCMFIGYPQG+KGYK+WC+E+G +KCIIS+
Sbjct: 637 GKAPSLEHLRVFGCTAYAHVKDGKLNKRALKCMFIGYPQGVKGYKLWCIEKGMNKCIISR 696

Query: 63  DVTFNEDEMSFCSKSQSELRSVENVEIEVRIESETRSS---------------------- 122
           DVTFNE EM +C K Q + ++ ++V  EVRI SE R S                      
Sbjct: 697 DVTFNETEMPYCVKEQQKQQTGDHVVTEVRIASEVRPSIDLDNQPPLVSEIEDTQQSEFD 756

Query: 123 --------------ATRGESSDGSQLGSQAESSQRFESD--------------------- 182
                         A   ESS  + L +   +  R + +                     
Sbjct: 757 GIQSQQERILIDERAFIEESSSNNDLQNYQLTRDRVQRERHAPIRYGYADLVAYALTCAA 816

Query: 183 -----ESITFEEAIEFGLKEQWKAAMEEELSSLHKNQMWSLVPN------VGSQNGYTQK 242
                E +TFEEAI    K+QWK AMEEEL SLHKNQ WSLVP       + S+  Y  K
Sbjct: 817 DSIEAEPLTFEEAIVSDSKKQWKDAMEEELFSLHKNQTWSLVPKPPNQKLIQSKWIYKIK 876

Query: 243 EGVDYNEVFSLVVRHLSIRLVLSIVVHFDMFLEHMDAIIAFLHGELEKVIYMAQPKGYEV 265
            G   N            RL+LSI VHFDMF+E MD    FLHGELE+VIYMAQPKGYEV
Sbjct: 877 PGTGGNS-----KPRYKARLILSIAVHFDMFIEQMDVTTTFLHGELEEVIYMAQPKGYEV 936

[Close]

BLAST of Lag0012059.1 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 1.6e-33
Identity = 108/332 (32.53%), Postives = 162/332 (48.80%), Query Frame = 0


Query: 7   SLDHLRVFCCLAYAHVKEE---KLKKRALKCMFIGYPQGIKGYKIWCLEEGRSKCIISKD 66
           S  HL+VF C A+AHV +E   KL  +++ C+FIGY     GY++W  +  + K I S+D
Sbjct: 644 SYSHLKVFGCRAFAHVPKEQRTKLDDKSIPCIFIGYGDEEFGYRLW--DPVKKKVIRSRD 703

Query: 67  VTFNEDEMSFCSKSQSELRS--VEN-VEIEVRIESETRSSATRGESSD-----------G 126
           V F E E+   +    ++++  + N V I     + T + +T  E S+           G
Sbjct: 704 VVFRESEVRTAADMSEKVKNGIIPNFVTIPSTSNNPTSAESTTDEVSEQGEQPGEVIEQG 763

Query: 127 SQLGSQAE-----------------------SSQRFESDESI---------TFEEAIEFG 186
            QL    E                        S+R+ S E +         + +E +   
Sbjct: 764 EQLDEGVEEVEHPTQGEEQHQPLRRSERPRVESRRYPSTEYVLISDDREPESLKEVLSHP 823

Query: 187 LKEQWKAAMEEELSSLHKNQMWSLVPNVGSQ----------------------------N 246
            K Q   AM+EE+ SL KN  + LV     +                             
Sbjct: 824 EKNQLMKAMQEEMESLQKNGTYKLVELPKGKRPLKCKWVFKLKKDGDCKLVRYKARLVVK 883

Query: 247 GYTQKEGVDYNEVFSLVVRHLSIRLVLSIVVHFDMFLEHMDAIIAFLHGELEKVIYMAQP 262
           G+ QK+G+D++E+FS VV+  SIR +LS+    D+ +E +D   AFLHG+LE+ IYM QP
Sbjct: 884 GFEQKKGIDFDEIFSPVVKMTSIRTILSLAASLDLEVEQLDVKTAFLHGDLEEEIYMEQP 943

[Close]

BLAST of Lag0012059.1 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 3.6e-17
Identity = 56/157 (35.67%), Postives = 80/157 (50.96%), Query Frame = 0


Query: 133  AIEFGLKEQWKAAMEEELSSLHKNQMWSLVP--------------------NVGSQN--- 192
            AI+    E+W+ AM  E+++   N  W LVP                    + GS N   
Sbjct: 959  AIQALKDERWRNAMGSEINAQIGNHTWDLVPPPPSHVTIVGCRWIFTKKYNSDGSLNRYK 1018

Query: 193  ------GYTQKEGVDYNEVFSLVVRHLSIRLVLSIVVHFDMFLEHMDAIIAFLHGELEKV 252
                  GY Q+ G+DY E FS V++  SIR+VL + V     +  +D   AFL G L   
Sbjct: 1019 ARLVAKGYNQRPGLDYAETFSPVIKSTSIRIVLGVAVDRSWPIRQLDVNNAFLQGTLTDD 1078

Query: 253  IYMAQPKGYEVKGKEDMVCLLYKSIYGLKQSPRQWYI 261
            +YM+QP G+  K + + VC L K++YGLKQ+PR WY+
Sbjct: 1079 VYMSQPPGFIDKDRPNYVCKLRKALYGLKQAPRAWYV 1115

[Close]

BLAST of Lag0012059.1 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 8.0e-17
Identity = 68/207 (32.85%), Postives = 99/207 (47.83%), Query Frame = 0


Query: 87   VEIEVRIESETRSSATRGESSDGSQLGSQAESSQRFESDESITFEEAIEFGLKEQWKAAM 146
            +++  +    T S ATR  + DG +  +Q  S     +  S     AI+    ++W+ AM
Sbjct: 899  IQVNAQAPVNTHSMATR--AKDGIRKPNQKYSYATSLAANSEP-RTAIQAMKDDRWRQAM 958

Query: 147  EEELSSLHKNQMWSLVP--------------------NVGSQN---------GYTQKEGV 206
              E+++   N  W LVP                    + GS N         GY Q+ G+
Sbjct: 959  GSEINAQIGNHTWDLVPPPPPSVTIVGCRWIFTKKFNSDGSLNRYKARLVAKGYNQRPGL 1018

Query: 207  DYNEVFSLVVRHLSIRLVLSIVVHFDMFLEHMDAIIAFLHGELEKVIYMAQPKGYEVKGK 265
            DY E FS V++  SIR+VL + V     +  +D   AFL G L   +YM+QP G+  K +
Sbjct: 1019 DYAETFSPVIKSTSIRIVLGVAVDRSWPIRQLDVNNAFLQGTLTDEVYMSQPPGFVDKDR 1078

[Close]

BLAST of Lag0012059.1 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 72.8 bits (177), Expect = 1.0e-11
Identity = 55/203 (27.09%), Postives = 93/203 (45.81%), Query Frame = 0


Query: 85   ENVEIEVRIESETRSSATRGESSDGSQLGSQAESSQRFESDESITFEEAIEFGLKEQWKA 144
            + +EI  R     ++      + + + L     ++    +D   +F+E      K  W+ 
Sbjct: 849  DGIEIINRRSERLKTKPQISYNEEDNSLNKVVLNAHTIFNDVPNSFDEIQYRDDKSSWEE 908

Query: 145  AMEEELSSLHKNQMWSLVPNVGSQN----------------------------GYTQKEG 204
            A+  EL++   N  W++     ++N                            G+TQK  
Sbjct: 909  AINTELNAHKINNTWTITKRPENKNIVDSRWVFSVKYNELGNPIRYKARLVARGFTQKYQ 968

Query: 205  VDYNEVFSLVVRHLSIRLVLSIVVHFDMFLEHMDAIIAFLHGELEKVIYMAQPKGYEVKG 260
            +DY E F+ V R  S R +LS+V+ +++ +  MD   AFL+G L++ IYM  P+G  +  
Sbjct: 969  IDYEETFAPVARISSFRFILSLVIQYNLKVHQMDVKTAFLNGTLKEEIYMRLPQG--ISC 1028

[Close]

BLAST of Lag0012059.1 vs. ExPASy TrEMBL
Match: A0A5D3DNU1 (Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G004440 PE=4 SV=1)

HSP 1 Score: 305.8 bits (782), Expect = 2.6e-79
Identity = 178/353 (50.42%), Postives = 209/353 (59.21%), Query Frame = 0


Query: 3   GEAPSLDHLRVFCCLAYAHVKEEKLKKRALKCMFIGYPQGIKGYKIWCLEEGRSKCIISK 62
           G+APSL+HLRVF C AYAHVK+ KL KRALKCMFIGYPQG+KGYK+WC+E+G +KCIIS+
Sbjct: 637 GKAPSLEHLRVFGCTAYAHVKDGKLNKRALKCMFIGYPQGVKGYKLWCIEKGMNKCIISR 696

Query: 63  DVTFNEDEMSFCSKSQSELRSVENVEIEVRIESETRSS---------------------- 122
           DVTFNE EM +C K Q + ++ ++V  EVRI SE R S                      
Sbjct: 697 DVTFNETEMPYCVKEQQKQQTGDHVVTEVRIASEVRPSIDLDNQPPLVSEIEDTQQSEFD 756

Query: 123 --------------ATRGESSDGSQLGSQAESSQRFESD--------------------- 182
                         A   ESS  + L +   +  R + +                     
Sbjct: 757 GIQSQQERILIDEGAFIEESSSNNDLQNYQLTRDRVQRERHAPIRYGYADLVAYALTCAA 816

Query: 183 -----ESITFEEAIEFGLKEQWKAAMEEELSSLHKNQMWSLVPNVGSQ------------ 242
                E +TFEEAI    K+QWK AMEEEL SLHKNQ WSLVP   +Q            
Sbjct: 817 DSIEAEPLTFEEAIVSDSKKQWKDAMEEELFSLHKNQTWSLVPKPPNQKLIQSKWIYKIK 876

Query: 243 -----------------NGYTQKEGVDYNEVFSLVVRHLSIRLVLSIVVHFDMFLEHMDA 265
                             GYTQKEGVD++E+FS VVRH SIRL+LSI VHFDMF+E MD 
Sbjct: 877 PGTGGNSKPRYKARLVAKGYTQKEGVDFHEIFSPVVRHSSIRLILSIAVHFDMFIEQMDV 936

[Close]

BLAST of Lag0012059.1 vs. ExPASy TrEMBL
Match: A0A5D3CTV2 (Putative polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold488G00910 PE=4 SV=1)

HSP 1 Score: 305.8 bits (782), Expect = 2.6e-79
Identity = 178/353 (50.42%), Postives = 209/353 (59.21%), Query Frame = 0


Query: 3   GEAPSLDHLRVFCCLAYAHVKEEKLKKRALKCMFIGYPQGIKGYKIWCLEEGRSKCIISK 62
           G+APSL+HLRVF C AYAHVK+ KL KRALKCMFIGYPQG+KGYK+WC+E+G +KCIIS+
Sbjct: 467 GKAPSLEHLRVFGCTAYAHVKDGKLNKRALKCMFIGYPQGVKGYKLWCIEKGMNKCIISR 526

Query: 63  DVTFNEDEMSFCSKSQSELRSVENVEIEVRIESETRSS---------------------- 122
           DVTFNE EM +C K Q + ++ ++V  EVRI SE R S                      
Sbjct: 527 DVTFNETEMPYCVKEQQKQQTGDHVVTEVRIASEVRPSIDLDNQPPLVSEIEDTQQSEFD 586

Query: 123 --------------ATRGESSDGSQLGSQAESSQRFESD--------------------- 182
                         A   ESS  + L +   +  R + +                     
Sbjct: 587 GIQSQQERILIDEGAFIEESSSNNDLQNYQLTRDRVQRERHAPIRYGYADLVAYALTCAA 646

Query: 183 -----ESITFEEAIEFGLKEQWKAAMEEELSSLHKNQMWSLVPNVGSQ------------ 242
                E +TFEEAI    K+QWK AMEEEL SLHKNQ WSLVP   +Q            
Sbjct: 647 DSIEAEPLTFEEAIVSDSKKQWKDAMEEELFSLHKNQTWSLVPKPPNQKLIQSKWIYKIK 706

Query: 243 -----------------NGYTQKEGVDYNEVFSLVVRHLSIRLVLSIVVHFDMFLEHMDA 265
                             GYTQKEGVD++E+FS VVRH SIRL+LSI VHFDMF+E MD 
Sbjct: 707 PGTGGNSKPRYKARLVAKGYTQKEGVDFHEIFSPVVRHSSIRLILSIAVHFDMFIEQMDV 766

[Close]

BLAST of Lag0012059.1 vs. ExPASy TrEMBL
Match: A0A5A7UB25 (Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold560G00190 PE=4 SV=1)

HSP 1 Score: 305.8 bits (782), Expect = 2.6e-79
Identity = 178/353 (50.42%), Postives = 209/353 (59.21%), Query Frame = 0


Query: 3   GEAPSLDHLRVFCCLAYAHVKEEKLKKRALKCMFIGYPQGIKGYKIWCLEEGRSKCIISK 62
           G+APSL+HLRVF C AYAHVK+ KL KRALKCMFIGYPQG+KGYK+WC+E+G +KCIIS+
Sbjct: 637 GKAPSLEHLRVFGCTAYAHVKDGKLNKRALKCMFIGYPQGVKGYKLWCIEKGMNKCIISR 696

Query: 63  DVTFNEDEMSFCSKSQSELRSVENVEIEVRIESETRSS---------------------- 122
           DVTFNE EM +C K Q + ++ ++V  EVRI SE R S                      
Sbjct: 697 DVTFNETEMPYCVKEQQKQQTGDHVVTEVRIASEVRPSIDLDNQPPLVSEIEDTQQSEFD 756

Query: 123 --------------ATRGESSDGSQLGSQAESSQRFESD--------------------- 182
                         A   ESS  + L +   +  R + +                     
Sbjct: 757 GIQSQQERILIDEGAFIEESSSNNDLQNYQLTRDRVQRERHAPIRYGYADLVAYALTCAA 816

Query: 183 -----ESITFEEAIEFGLKEQWKAAMEEELSSLHKNQMWSLVPNVGSQ------------ 242
                E +TFEEAI    K+QWK AMEEEL SLHKNQ WSLVP   +Q            
Sbjct: 817 DSIEAEPLTFEEAIVSDSKKQWKDAMEEELFSLHKNQTWSLVPKPPNQKLIQSKWIYKIK 876

Query: 243 -----------------NGYTQKEGVDYNEVFSLVVRHLSIRLVLSIVVHFDMFLEHMDA 265
                             GYTQKEGVD++E+FS VVRH SIRL+LSI VHFDMF+E MD 
Sbjct: 877 PGTGGNSKPRYKARLVAKGYTQKEGVDFHEIFSPVVRHSSIRLILSIAVHFDMFIEQMDV 936

[Close]

BLAST of Lag0012059.1 vs. ExPASy TrEMBL
Match: A0A5A7TP18 (Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold236G001600 PE=4 SV=1)

HSP 1 Score: 276.2 bits (705), Expect = 2.2e-70
Identity = 165/329 (50.15%), Postives = 195/329 (59.27%), Query Frame = 0


Query: 3   GEAPSLDHLRVFCCLAYAHVKEEKLKKRALKCMFIGYPQGIKGYKIWCLEEGRSKCIISK 62
           G+APSL+HLRVF C AYAHVK+ KL KRALKC+FIGYPQG+KGYK+WC+E+G +KCIIS+
Sbjct: 527 GKAPSLEHLRVFGCTAYAHVKDGKLNKRALKCIFIGYPQGVKGYKLWCIEKGMNKCIISR 586

Query: 63  DVTFNEDEMSFCSKSQSELRSVENVEIEVRIESETRSS---------------------- 122
           DVTFNE EM +C K Q + ++ ++V  EVRI SE R S                      
Sbjct: 587 DVTFNETEMPYCVKEQQKQQTGDHVVTEVRIASEVRPSIDLDNQPPLVSEIEDTQQSEFD 646

Query: 123 --------------ATRGESSDGSQLGSQAESSQRFESD--------------------- 182
                         A   ESS  + L +   +  R + +                     
Sbjct: 647 GIQSQQERILIDEGAFIEESSSNNDLQNYQLTRDRVQRERHAPIRYGYADLVAYALTCAA 706

Query: 183 -----ESITFEEAIEFGLKEQWKAAMEEELSSLHKNQMWSLVPNVGSQNGYTQKEGVDYN 242
                E +TFEEAI    K+QWK AMEEEL SLHKNQ WSLVP   +Q     K    + 
Sbjct: 707 DSIEAEPLTFEEAIVSDSKKQWKDAMEEELFSLHKNQTWSLVPKPPNQKLIQSK----WI 766

Query: 243 EVFSLVVRHLSIRLVLSIVVHFDMFLEHMDAIIAFLHGELEKVIYMAQPKGYEVKGKE-- 265
                VVRH SIRL+LSI VHFDMF+E MD    FLHGELE+VIYMAQPKGYEVKGKE  
Sbjct: 767 YKIKPVVRHSSIRLILSIAVHFDMFIEQMDVTTTFLHGELEEVIYMAQPKGYEVKGKEDM 826

[Close]

BLAST of Lag0012059.1 vs. ExPASy TrEMBL
Match: A0A5A7U2U7 (Retrotransposon protein, putative, Ty1-copia sub-class OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold385G00590 PE=4 SV=1)

HSP 1 Score: 270.4 bits (690), Expect = 1.2e-68
Identity = 162/330 (49.09%), Postives = 191/330 (57.88%), Query Frame = 0


Query: 3   GEAPSLDHLRVFCCLAYAHVKEEKLKKRALKCMFIGYPQGIKGYKIWCLEEGRSKCIISK 62
           G+APSL+HLRVF C AYAHVK+ KL KRALKCMFIGYPQG+KGYK+WC+E+G +KCIIS+
Sbjct: 637 GKAPSLEHLRVFGCTAYAHVKDGKLNKRALKCMFIGYPQGVKGYKLWCIEKGMNKCIISR 696

Query: 63  DVTFNEDEMSFCSKSQSELRSVENVEIEVRIESETRSS---------------------- 122
           DVTFNE EM +C K Q + ++ ++V  EVRI SE R S                      
Sbjct: 697 DVTFNETEMPYCVKEQQKQQTGDHVVTEVRIASEVRPSIDLDNQPPLVSEIEDTQQSEFD 756

Query: 123 --------------ATRGESSDGSQLGSQAESSQRFESD--------------------- 182
                         A   ESS  + L +   +  R + +                     
Sbjct: 757 GIQSQQERILIDERAFIEESSSNNDLQNYQLTRDRVQRERHAPIRYGYADLVAYALTCAA 816

Query: 183 -----ESITFEEAIEFGLKEQWKAAMEEELSSLHKNQMWSLVPN------VGSQNGYTQK 242
                E +TFEEAI    K+QWK AMEEEL SLHKNQ WSLVP       + S+  Y  K
Sbjct: 817 DSIEAEPLTFEEAIVSDSKKQWKDAMEEELFSLHKNQTWSLVPKPPNQKLIQSKWIYKIK 876

Query: 243 EGVDYNEVFSLVVRHLSIRLVLSIVVHFDMFLEHMDAIIAFLHGELEKVIYMAQPKGYEV 265
            G   N            RL+LSI VHFDMF+E MD    FLHGELE+VIYMAQPKGYEV
Sbjct: 877 PGTGGNS-----KPRYKARLILSIAVHFDMFIEQMDVTTTFLHGELEEVIYMAQPKGYEV 936

[Close]

BLAST of Lag0012059.1 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 87.4 bits (215), Expect = 2.8e-17
Identity = 57/171 (33.33%), Postives = 91/171 (53.22%), Query Frame = 0


Query: 123 ESDESITFEEAIEFGLKEQWKAAMEEELSSLHKNQMW---SLVPN---VGSQ-------- 182
           ++ E  T+ EA EF +   W  AM++E+ ++     W   +L PN   +G +        
Sbjct: 82  KAKEPSTYNEAKEFLV---WCGAMDDEIGAMETTHTWEICTLPPNKKPIGCKWVYKIKYN 141

Query: 183 --------------NGYTQKEGVDYNEVFSLVVRHLSIRLVLSIVVHFDMFLEHMDAIIA 242
                          GYTQ+EG+D+ E FS V +  S++L+L+I   ++  L  +D   A
Sbjct: 142 SDGTIERYKARLVAKGYTQQEGIDFIETFSPVCKLTSVKLILAISAIYNFTLHQLDISNA 201

Query: 243 FLHGELEKVIYMAQPKGYEVKGKEDM----VCLLYKSIYGLKQSPRQWYIR 262
           FL+G+L++ IYM  P GY  +  + +    VC L KSIYGLKQ+ RQW+++
Sbjct: 202 FLNGDLDEEIYMKLPPGYAARQGDSLPPNAVCYLKKSIYGLKQASRQWFLK 249

The following BLAST results are available for this feature:

BLAST of Lag0012059.1 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK13826.1	5.4e-79	50.42	putative polyprotein [Cucumis melo var. makuwa]	[more]
TYK25306.1	5.4e-79	50.42	putative gag-pol polyprotein [Cucumis melo var. makuwa]	[more]
KAA0050719.1	5.4e-79	50.42	putative gag-pol polyprotein [Cucumis melo var. makuwa]	[more]
KAA0043826.1	4.6e-70	50.15	putative gag-pol polyprotein [Cucumis melo var. makuwa]	[more]
KAA0047995.1	2.5e-68	49.09	retrotransposon protein, putative, Ty1-copia sub-class [Cucumis melo var. makuwa...	[more]

BLAST of Lag0012059.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	1.6e-33	32.53	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
Q94HW2	3.6e-17	35.67	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q9ZT94	8.0e-17	32.85	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
P04146	1.0e-11	27.09	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]

BLAST of Lag0012059.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DNU1	2.6e-79	50.42	Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A5D3CTV2	2.6e-79	50.42	Putative polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold488...	[more]
A0A5A7UB25	2.6e-79	50.42	Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sca...	[more]
A0A5A7TP18	2.2e-70	50.15	Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sca...	[more]
A0A5A7U2U7	1.2e-68	49.09	Retrotransposon protein, putative, Ty1-copia sub-class OS=Cucumis melo var. maku...	[more]

BLAST of Lag0012059.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	2.8e-17	33.33	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 169..261 e-value: 3.9E-25 score: 88.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 95..125
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 102..123
None	No IPR available	PANTHER	PTHR45895	FAMILY NOT NAMED	coord: 126..258 coord: 5..80

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lag0012059	Lag0012059	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lag0012059.1.exon1	Lag0012059.1.exon1	exon
Lag0012059.1.exon2	Lag0012059.1.exon2	exon
Lag0012059.1.exon3	Lag0012059.1.exon3	exon
Lag0012059.1.exon4	Lag0012059.1.exon4	exon
Lag0012059.1.exon5	Lag0012059.1.exon5	exon
Lag0012059.1.exon6	Lag0012059.1.exon6	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.Lag0012059.1	cds.Lag0012059.1	CDS
cds.Lag0012059.1	cds.Lag0012059.1_2	CDS
cds.Lag0012059.1	cds.Lag0012059.1_3	CDS
cds.Lag0012059.1	cds.Lag0012059.1_4	CDS
cds.Lag0012059.1	cds.Lag0012059.1_5	CDS
cds.Lag0012059.1	cds.Lag0012059.1_6	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lag0012059.1	Lag0012059.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0044237	cellular metabolic process
molecular_function	GO:1901363	heterocyclic compound binding
molecular_function	GO:0043167	ion binding
molecular_function	GO:0097159	organic cyclic compound binding
molecular_function	GO:0016740	transferase activity