Lag0010622.1 (mRNA) Sponge gourd (AG‐4) v1

Overview
NameLag0010622.1
TypemRNA
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionDUF4283 domain-containing protein
Locationchr1: 2468278 .. 2468870 (+)
Sequence length426
RNA-Seq ExpressionLag0010622.1
SyntenyLag0010622.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTGGAGAAAATATCAAGCAAAAGGGGTCACTCAGCCGAAATAGCAAAGCTAGGACCAAATGGGGCATTAATAAGCTTATCGTACCAGCATATGAGAACAAAAAGGGATGGGGTAGCCTCATTACCAGCATTAACACTCCCTTACCAGCCACAAAGCTCGAGCAGTTATTGAGCCTCGGAGAGTTAATGAGGAAAGAAGGAATGTCTCGTATAAAGACGCATTAAAGAAAAATCAAAAGGACAAACTCACCCACCAACAAACTCCAAACGCAACCCAAACCTCATCCAATCCCCAGTTTGCCACCCTATATCTATCCTATTCGGTCATTGTTCAAAGAAAACAGTTTCATGATAACTGGCATGATATCATGCGAGCCTTACATCAGGATCTATCAGCCTTCTCCTTTGTCAGCCCCCTACAACCAAAAAAATCCCTCCTTGCTTGTGAGGATGAAGATCAAGCTCGGACCTTAGCCAATATCAAAGGATGGTATAAGGTTGGAAAATACCAAGTCTGTTTCTTCCCATGGAGTGCAAAAACTATGCTAGGTAAGCCAAAGGTTCCATCCTATGGTGGATGGATGGATTAA

mRNA sequence

ATGAGTGGAGAAAATATCAAGCAAAAGGGGTCACTCAGCCGAAATAGCAAAGCTAGGACCAAATGGGGCATTAATAAGCTTATCGTACCAGCATATGAGAACAAAAAGGGATGGGGTAGCCTCATTACCAGCATTAACACTCCCTTACCAGCCACAAAGCTCGAGCAGTTATTGAGCCTCGGAGAGTTAATGAGGAAAGAAGGAATGTCTCCCTTACATCAGGATCTATCAGCCTTCTCCTTTGTCAGCCCCCTACAACCAAAAAAATCCCTCCTTGCTTGTGAGGATGAAGATCAAGCTCGGACCTTAGCCAATATCAAAGGATGGTATAAGGTTGGAAAATACCAAGTCTGTTTCTTCCCATGGAGTGCAAAAACTATGCTAGGTAAGCCAAAGGTTCCATCCTATGGTGGATGGATGGATTAA

Coding sequence (CDS)

ATGAGTGGAGAAAATATCAAGCAAAAGGGGTCACTCAGCCGAAATAGCAAAGCTAGGACCAAATGGGGCATTAATAAGCTTATCGTACCAGCATATGAGAACAAAAAGGGATGGGGTAGCCTCATTACCAGCATTAACACTCCCTTACCAGCCACAAAGCTCGAGCAGTTATTGAGCCTCGGAGAGTTAATGAGGAAAGAAGGAATGTCTCCCTTACATCAGGATCTATCAGCCTTCTCCTTTGTCAGCCCCCTACAACCAAAAAAATCCCTCCTTGCTTGTGAGGATGAAGATCAAGCTCGGACCTTAGCCAATATCAAAGGATGGTATAAGGTTGGAAAATACCAAGTCTGTTTCTTCCCATGGAGTGCAAAAACTATGCTAGGTAAGCCAAAGGTTCCATCCTATGGTGGATGGATGGATTAA

Protein sequence

MSGENIKQKGSLSRNSKARTKWGINKLIVPAYENKKGWGSLITSINTPLPATKLEQLLSLGELMRKEGMSPLHQDLSAFSFVSPLQPKKSLLACEDEDQARTLANIKGWYKVGKYQVCFFPWSAKTMLGKPKVPSYGGWMD
Homology
[Close]
BLAST of Lag0010622.1 vs. NCBI nr
Match: KAA0039967.1 (hypothetical protein E6C27_scaffold122G002490 [Cucumis melo var. makuwa])

HSP 1 Score: 58.9 bits (141), Expect = 4.0e-05
Identity = 26/69 (37.68%), Postives = 39/69 (56.52%), Query Frame = 0 

Query: 72  LHQDLSAFSFVSPLQPKKSLLACEDEDQARTLANIKGWYKVGKYQVCFFPWSAKTMLGKP 131
           L++ L       P +  K+L+  ++E+QA+ L   KGW  VG++ V F  WS KT     
Sbjct: 205 LNEQLDTTVRYKPFRADKALIYFKNEEQAKLLCKNKGWTTVGRFYVKFEEWSQKTHASPK 264

Query: 132 KVPSYGGWM 141
            +PSYGGW+
Sbjct: 265 VIPSYGGWI 273

[Close]
BLAST of Lag0010622.1 vs. NCBI nr
Match: KAA0040039.1 (hypothetical protein E6C27_scaffold366G00060 [Cucumis melo var. makuwa])

HSP 1 Score: 58.5 bits (140), Expect = 5.2e-05
Identity = 26/69 (37.68%), Postives = 38/69 (55.07%), Query Frame = 0 

Query: 72  LHQDLSAFSFVSPLQPKKSLLACEDEDQARTLANIKGWYKVGKYQVCFFPWSAKTMLGKP 131
           L++ L       P    K+L+  ++E+QA+ L   KGW  VG++ V F  WS KT     
Sbjct: 221 LNEQLDTTVRYKPFHADKALIYFKNEEQAKLLCKNKGWTTVGRFYVKFEEWSQKTHASPK 280

Query: 132 KVPSYGGWM 141
            +PSYGGW+
Sbjct: 281 VIPSYGGWI 289

[Close]
BLAST of Lag0010622.1 vs. NCBI nr
Match: TYK24535.1 (hypothetical protein E5676_scaffold266G00770 [Cucumis melo var. makuwa])

HSP 1 Score: 58.5 bits (140), Expect = 5.2e-05
Identity = 26/69 (37.68%), Postives = 38/69 (55.07%), Query Frame = 0 

Query: 72  LHQDLSAFSFVSPLQPKKSLLACEDEDQARTLANIKGWYKVGKYQVCFFPWSAKTMLGKP 131
           L++ L       P    K+L+  ++E+QA+ L   KGW  VG++ V F  WS KT     
Sbjct: 205 LNEQLDTTVRYKPFHADKALIYFKNEEQAKLLCKNKGWTTVGRFYVKFEEWSQKTHASPK 264

Query: 132 KVPSYGGWM 141
            +PSYGGW+
Sbjct: 265 VIPSYGGWI 273

[Close]
BLAST of Lag0010622.1 vs. NCBI nr
Match: KAA0058103.1 (hypothetical protein E6C27_scaffold274G004110 [Cucumis melo var. makuwa])

HSP 1 Score: 54.7 bits (130), Expect = 7.6e-04
Identity = 34/125 (27.20%), Postives = 51/125 (40.80%), Query Frame = 0 

Query: 27  LIVPAYENKKGWGSLITSINTPLPAT------------KLEQLLSLGELMRKEGMSPLHQ 86
           ++VP    K GW S ++ I   +  T             L  L++   LM +     L +
Sbjct: 108 ILVPEGPEKSGWVSFLSMITPKVEITTNANMQRQSLKEDLPFLVTQATLMPQTIQVNLQE 167

Query: 87  DLSAFSFVSPLQPKKSLLACEDEDQARTLANIKGWYKVGKYQVCFFPWSAKTMLGKPKVP 140
                 ++  L  +K+L+       A  L   KGW  VGKY V F  W+  +      +P
Sbjct: 168 TNRGIFYIPCLHAEKALVHFNSNVPANLLCQNKGWTTVGKYTVRFEKWAPASHASPKLIP 227

[Close]
BLAST of Lag0010622.1 vs. NCBI nr
Match: KAA0050054.1 (hypothetical protein E6C27_scaffold675G00340 [Cucumis melo var. makuwa])

HSP 1 Score: 54.7 bits (130), Expect = 7.6e-04
Identity = 23/69 (33.33%), Postives = 36/69 (52.17%), Query Frame = 0 

Query: 72  LHQDLSAFSFVSPLQPKKSLLACEDEDQARTLANIKGWYKVGKYQVCFFPWSAKTMLGKP 131
           L++ L       P    K+L+  ++E+QA  +   KGW  VG++ V F  W+ K      
Sbjct: 259 LNEQLDTTVRYKPFHADKALICFKNEEQANLICKNKGWTTVGRFYVKFEEWNQKAHASPK 318

Query: 132 KVPSYGGWM 141
            +PSYGGW+
Sbjct: 319 VIPSYGGWI 327

The following BLAST results are available for this feature:
BLAST of Lag0010622.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0039967.14.0e-0537.68hypothetical protein E6C27_scaffold122G002490 [Cucumis melo var. makuwa][more]
KAA0040039.15.2e-0537.68hypothetical protein E6C27_scaffold366G00060 [Cucumis melo var. makuwa][more]
TYK24535.15.2e-0537.68hypothetical protein E5676_scaffold266G00770 [Cucumis melo var. makuwa][more]
KAA0058103.17.6e-0427.20hypothetical protein E6C27_scaffold274G004110 [Cucumis melo var. makuwa][more]
KAA0050054.17.6e-0433.33hypothetical protein E6C27_scaffold675G00340 [Cucumis melo var. makuwa][more]
BLAST of Lag0010622.1 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Lag0010622Lag0010622gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Lag0010622.1.exon1Lag0010622.1.exon1exon
Lag0010622.1.exon2Lag0010622.1.exon2exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
cds.Lag0010622.1cds.Lag0010622.1CDS
cds.Lag0010622.1cds.Lag0010622.1_2CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Lag0010622.1Lag0010622.1-proteinpolypeptide