Lag0010349.1 (mRNA) Sponge gourd (AG‐4) v1

Overview
NameLag0010349.1
TypemRNA
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionUnknown protein
Locationchr9: 46552413 .. 46556440 (+)
Sequence length864
RNA-Seq ExpressionLag0010349.1
SyntenyLag0010349.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCCGGCGACCGACGGCCGGCAGCCGGCGGCCACCGCTCGCCGCCGCCGCCGGCCGCCGGCGACCTTTTTTTTTTTTTTTTTTTTCTTTTCTCTCCTTTTTTCTTTTTCTCTTCTTCCTTTTTCTCTTCTTTCTTCACTGATTCAAAAAAAAAAAAAAAAAAAGAAAGGAATGGGGGAGGGAGGGAGGACCTCCCTCCTTCGATTTTCCGGCGAAAACGGAAGGAGGGAGGTCCTCCCTCCCTCCCCGTTTCGGATCTGAAACAGGGAGGGAGGGAGGACCTCCCTCCTTCGGTTTTCGCCGGAAAATCGAAGGAGGGAGGTCCTCCCTCCCTCCCCGTTTCAGATCCGAAACGGGGAGGGAGGGAGGACCTCCCTCCTTCCGTTTTCGCCGGAAAATCGAAGGAGGGAGGTCCTCCCTCCCTCCCCCATTCCTTTCTTTTTTTTTTTTTTTTTTTAAATCAGTGAAGAAAGAAGAGAAAAAGGAAGAAGAGAAAAAGAAAAAAGGAGAGAAAAAAAAAAAAAAAAAAAGGTCGCCGGCGGCCGGCGGCGGCGGCGAGCGGTGGCCGCCGGCTGCCGGCCGCCGGTCGCCGGACATAGGAAGAAGAAGAAGGAGGAAGGAGAAGGTTGAGAAGGTGGAGAAGATGGAAGAGAAGAAGAAGAAGAGAGAGAAAGTGAAAAAGAATAAAAAAAATAAAAAAATATTAATATTATATATTTTTTAAATATTTTTTATTTAAAAAATAAAATAAATAATTTTTATATTAAAATAATAGTGCCACGTCAGCAGCCGTTAAAAGTTAACAGAAAAATTGACGGCAGGGACCAAAGTGCTCCTTATCTCAAACCTCGGGGGTATTTTTGTTGAGTTTGAAAACTCAGGGACCAAAGTGTCACTTAACCCAAACCTCAGGGACTAAAAGTGTATTTTTCCCTATTTTTTTTAATTCATTAACCTCATTTTGGATGGAAAAATTTGAATCTCTAACTTTTTGGTCGAGAGTACATGTAAATTATTGCGGATGTTCACTTTGACATATAAAATTATCATTTTGACTAATAATATATTGCATAGTCTAAATCACACCTAAGCTTGATTTTATTTTAGCATGAAATCATTTTTTGAATAGATGAGTTCTCACACTTATTACCAAAACTACCACATTTCTCTACAAATAATTTCAGCTAACACAATTTTATTTACAATTATAAATAGCTTCAAAACTATTATAATGTTATACATTTTTAAAAAACCTGCCATATTTCTCTTTTGATACTGTTATACATTTTTAAAAAACCTGCCATATGTTCATTTGATCCTTGTATATTAGCCTTTGGTTCCTTTTGGTCATTGTACTTTTGACTTGTTCATTTTAATCCTTGTACTCTTAAAAATAACTAATTTAATCCCTATTTGCAAAATTTAAACATAAATTTTATACACATGAAACTCTTTAATCAAATTTATGACTACATTTCCAGAAATTTAGTAAGTGAACTGTCATCCTAAAATTATGGTCGAAAAAATGATAAAAAAATTGAAAATGAAGGAACCAAATTGGTCTATTTTTAAAAGTATAAGGATCAAAATGAACCAGAACGAAGCAAAACATACCAAAGCAAAAAAAATCGAGACTAAAATAGTATTTAAACTAGAAAATAATTATTGGAAAGAGACATCTTAAATTGAAACACGAACAAATTAAAGCATGTGGATTGTTGAACAGAAAATCTGAGTATATGAAGGCCTTGTACAGCTACAAGTTTGTAATTTTGCAGGAAATATCTAATCGAGTGGGGATGGGATGGATAGGAACCACATCGTTGCAGATATGGTGCGATCAGCTCCATAGATGGATAAGTGACCCAATATAATAAATAAATAAATAAGGATTAAATTATAAGATAAGCCCATGAAATTTTAAGTTTGTGTCTTTTTGGTTCAATCTTAAAAAAAAAATGTCAAATAGATCCTAAAACTTTCAATGATTCAATTTTAAATATAAAAGAACGTTTAATTTTAAAAATTTTCCCTTCAAAATGGTGTTGGGTTTCATAGGTTCTGATACCAATGGGCAATGAGTAGAGTAACTCATTTATCTTATAAATTGTGAGGTCTCTACTTATTTTTTCAATGTGAGGTCGTGCGAATATTAAACAATTTTTACAACTTAAGGACCAATTAAATAATATTAATTACAAAATTACAATAAACCATTTTAAAAGTATCCACCTAAATATATAAACAATGAAACTAGAAATAATTAAGATAATTTAAAATAGAATTAAGTTTTTTTATTCAATTAATTTTTCTAAAATGATCTATTTATTGGATGTTTGTATATATGGGTGAAATTTAAAAATATCTAAATGCTAGCCCGTTTTTTTTTTTTTTTTAACAACTAAATGCTAGCCCGTTTAAACTGATTAAAATTTTAAAAATATATATAAATATATATGGCAAGATTTAAAAATTGAAAATTTAGTAAAGTTTAGATTACATAAAATTCGATTATGCATCTAATAGATAATTTAATTTTCGATTACATAAAATTCGATTATGCATCTAATAGATAATTTAATTTTGTTAAAATCATGAATATGTAAGTGACTGATTTGACGTAAAATAGAAAGTTTAGAGATTTATTAGACACTTTTTGAAGGCTTGGAGACCAAATAGATACAAACCTGTAAAGAAATCAATCATAATTCATAGAACATGTTGGGGGCTTGTTTTATCTATTTGGTAACTTTCTCTTTATTTAAAAATAGCTCAAATCGTTGGCCATGAGTGGAGTGATCCTTGTAGTTTATACATTGTAAGGTCTCCACCATAAGATGGAAGATGGTGACTCTTTGGGTTCACCAATCTTAGATTGGATCCTAATTTCTTTTTATTAGACCGAATACACGTTTGGGTTTAATGGGCTCTATACCATATTATATTAAATGAGCTTCCATCTCAAAACCAATTGGCATGAGTGGAGTGACCCTTGTAGTTTATATATGGTAAGGTCTCCACCATTCTTTTCGATGTGGGATCCTCAACACGTTGTATATTTAAAAAAAAAAAGAAAAAAAACAAACAAACAAAACTCAAATCGATAATTCACGGCCTAATTACGTGTTTTGTTGAGATAAAACATGTCCGACATTATCTGTTAAACTCTTTTAGACTACCTTTTATAGTTTCAAATGTTTCTCTCAAAATAGTTTATTTCTCAATCTCATTTTTTAATAAATTATTTTTAGTGATTGCCAAACACTAGAATTTTTTTTTTCTAAAATTAAATATTTGAAAAGTTAAACCAATCACACCATTAATTTGTGATGTTTGAATTTTCTTCTAAAATTGTGATTTGAATTATTTTTAAACTATATTATTAGTCTAATCACAATTATACTTGAAGATGTGGAAGTGAACATAAATAAATGGTAATTAGTATGTACCTTCAACGAGTGAGGGAGGTACAAAGGATCCTCCTGAACTTAAAAAAAAAAATTATTACGTATGTATATTACACACCACATTTATTTTCTAATATATATAGTTGCATAGCCTGGTGTTACAAGTTTGATCTTTTTTTTTTCAGTGGTATATTTCAGTTTCATTCTTTTTCTTTTATATCTATGTAAAAAGAATTATAACTTTTATTGAAAACTTTGAGATTTGCCTCTAATATGATCTGAATTTAAAAGGTGTTTAATTGGTTTTGAAACTTACAATTTTGGTATTCAATAAATTTCAAAATTTTCAATTTTTGATGCCTAATAAATCCTTATAGGTAATTTTGGACCACCATGACATACAAGGAGCTGACGAGGACAACCGGGCGGAGGCAGAACCAGGGATTGACTCAGAGGAGGACCAGACCAAATGGGTCGGGCCGATTGGGCCCGACCCACATGGTCGGTCTCGGCCTTGGGCCGAGGCCGACCATTCGGGCCGCGTGCGCGGGCCGAGTGTACTAGCCTCCTATCGGTCCCTACTGCCTCCGTCTGCCTCGGTTTTGCCTGGTTTGACCTAA

mRNA sequence

ATGTCCGGCGACCGACGGCCGGCAGCCGGCGGCCACCGCTCGCCGCCGCCGCCGGCCGCCGGCGACCTTTTTTTTTTTTTTTTTTTTCTTTTCTCTCCTTTTTTCTTTTTCTCTTCTTCCTTTTTCTCTTCTTTCTTCACTGATTCAAAAAAAAAAAAAAAAAAAGAAAGGAATGGGGGAGGGAGGGAGGACCTCCCTCCTTCGATTTTCCGGCGAAAACGGAAGGAGGGAGGTCCTCCCTCCCTCCCCGTTTCGGATCTGAAACAGGGAGGGAGGGAGGACCTCCCTCCTTCGGTTTTCGCCGGAAAATCGAAGGAGGGAGGTCCTCCCTCCCTCCCCGTTTCAGATCCGAAACGGGGAGGGAGGGAGGACCTCCCTCCTTCCGTTTTCGCCGGAAAATCGAAGGAGGGAGTGAAGAAAGAAGAGAAAAAGGAAGAAGAGAAAAAGAAAAAAGGAGAGAAAAAAAAAAAAAAAAAAAGGTCGCCGGCGGCCGGCGGCGGCGGCGAGCGGTGGCCGCCGGCTGCCGGCCGCCGGTCGCCGGACATAGGAAGAAGAAGAAGGAGGAAGGAGAAGGTTGAGAAGGTGGAGAAGATGGAAGAGAAGAAGAAGAAGAGAGAGAAAGTAATTTTGGACCACCATGACATACAAGGAGCTGACGAGGACAACCGGGCGGAGGCAGAACCAGGGATTGACTCAGAGGAGGACCAGACCAAATGGGTCGGGCCGATTGGGCCCGACCCACATGGTCGGTCTCGGCCTTGGGCCGAGGCCGACCATTCGGGCCGCGTGCGCGGGCCGAGTGTACTAGCCTCCTATCGGTCCCTACTGCCTCCGTCTGCCTCGGTTTTGCCTGGTTTGACCTAA

Coding sequence (CDS)

ATGTCCGGCGACCGACGGCCGGCAGCCGGCGGCCACCGCTCGCCGCCGCCGCCGGCCGCCGGCGACCTTTTTTTTTTTTTTTTTTTTCTTTTCTCTCCTTTTTTCTTTTTCTCTTCTTCCTTTTTCTCTTCTTTCTTCACTGATTCAAAAAAAAAAAAAAAAAAAGAAAGGAATGGGGGAGGGAGGGAGGACCTCCCTCCTTCGATTTTCCGGCGAAAACGGAAGGAGGGAGGTCCTCCCTCCCTCCCCGTTTCGGATCTGAAACAGGGAGGGAGGGAGGACCTCCCTCCTTCGGTTTTCGCCGGAAAATCGAAGGAGGGAGGTCCTCCCTCCCTCCCCGTTTCAGATCCGAAACGGGGAGGGAGGGAGGACCTCCCTCCTTCCGTTTTCGCCGGAAAATCGAAGGAGGGAGTGAAGAAAGAAGAGAAAAAGGAAGAAGAGAAAAAGAAAAAAGGAGAGAAAAAAAAAAAAAAAAAAAGGTCGCCGGCGGCCGGCGGCGGCGGCGAGCGGTGGCCGCCGGCTGCCGGCCGCCGGTCGCCGGACATAGGAAGAAGAAGAAGGAGGAAGGAGAAGGTTGAGAAGGTGGAGAAGATGGAAGAGAAGAAGAAGAAGAGAGAGAAAGTAATTTTGGACCACCATGACATACAAGGAGCTGACGAGGACAACCGGGCGGAGGCAGAACCAGGGATTGACTCAGAGGAGGACCAGACCAAATGGGTCGGGCCGATTGGGCCCGACCCACATGGTCGGTCTCGGCCTTGGGCCGAGGCCGACCATTCGGGCCGCGTGCGCGGGCCGAGTGTACTAGCCTCCTATCGGTCCCTACTGCCTCCGTCTGCCTCGGTTTTGCCTGGTTTGACCTAA

Protein sequence

MSGDRRPAAGGHRSPPPPAAGDLFFFFFFLFSPFFFFSSSFFSSFFTDSKKKKKKERNGGGREDLPPSIFRRKRKEGGPPSLPVSDLKQGGREDLPPSVFAGKSKEGGPPSLPVSDPKRGGREDLPPSVFAGKSKEGVKKEEKKEEEKKKKGEKKKKKKRSPAAGGGGERWPPAAGRRSPDIGRRRRRKEKVEKVEKMEEKKKKREKVILDHHDIQGADEDNRAEAEPGIDSEEDQTKWVGPIGPDPHGRSRPWAEADHSGRVRGPSVLASYRSLLPPSASVLPGLT
Homology
The following BLAST results are available for this feature:
BLAST of Lag0010349.1 vs.
Match NameE-valueIdentityDescription
BLAST of Lag0010349.1 vs.
Match NameE-valueIdentityDescription
BLAST of Lag0010349.1 vs.
Match NameE-valueIdentityDescription
BLAST of Lag0010349.1 vs.
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 188..208
NoneNo IPR availableCOILSCoilCoilcoord: 135..160
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 48..79
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 186..234
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 134..149
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 48..262

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Lag0010349Lag0010349gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Lag0010349.1.exon1Lag0010349.1.exon1exon
Lag0010349.1.exon2Lag0010349.1.exon2exon
Lag0010349.1.exon3Lag0010349.1.exon3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
cds.Lag0010349.1cds.Lag0010349.1CDS
cds.Lag0010349.1cds.Lag0010349.1_2CDS
cds.Lag0010349.1cds.Lag0010349.1_3CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Lag0010349.1Lag0010349.1-proteinpolypeptide