Lag0007948.1 (mRNA) Sponge gourd (AG‐4) v1

Overview


Name	Lag0007948.1
Type	mRNA
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	small GTPase LIP1-like
Location	chr9: 8856363 .. 8862736 (+)
Sequence length	666
RNA-Seq Expression	Lag0007948.1
Synteny	Lag0007948.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCTGGAAGGACCGTGATAGGGAGAACAAAGAACTCAATGGCGGTCCTCTCTGTGGGCAGGTTCGAGTGCTTGTGGTTGGTGATTCAGGTGATTTTTTTTAATCATTCTAGTTTATTTGCTTCTAGCTTTTGTGATTGAATGCTTCTTCTTTTTTTATTGCACTTTTTTTTACTGGTAGCTTCACTGGAATGTTATGTTCACGGGGAGTATCCTCTGCTTGTGTTTTCCATATTCTCTGTTTAGCTGATCTAGTTGGACTGATAGTTATTTCCATAGCTAAGTTCAGAGTTTAAGATGCAAAGTCGTGATTTTGATTCCCTTGATAGAGCAACTTAGAGGGAATTTGGAACTGTTCGTATTTTTAAATGGGAACTTGACTAGTAAAGATTTTCAAAAGCAGAGTGGCTAAATGGCATATCGTTTGGCAAGTGTGGTGTTTCTGGACATTAAATTGAAAGTCTTAATAACTGACAATTTTTTTTTACAAATGTTTTCCATTTGGGGTAAAATGTTTGGTTTTAAGGAAACTTCATCTCATCTGGAATAAAATGTGATAAATCAGTTACCTTATTTTCACTTTAATACATAGCTTGTCTTGGAGGGAAGTACGCAAATTCTAAGCATATTCATCAGATCTAAGCCATTATTTTAAGATTAAGACTAGTTTTGCTGAAGTGAAAATAGATCATCTTTCCTCATGTAAAAGTGCAAACAAGATCCCCATGTAATAATGAAAATTAATCTTTGTGGTTTAATTTCAGGTCATAATTGATTTAGGAAAGAATGTATCTGTGGGCACTAATTTTCTTTTTTGTCATTCGATAATTCTTAAAGTTCATTCTAGGCTAGATAGTTGGAAGAAGATATTTTCTTGGGAAGTTGCACTTGTTTTGATCTCCTTAGCTTTAAAAACCTTACCTTCTGTTTTAACCTTCCAAAATTCCCTGTACAATTAAAAGCGTAATAAGTAACTTTTTGCAGGAATTGAGAGATGTGAAAGAGAGTTTTCTTGGTTAATTAATAAAAAGCTATTTCCAAGTCTACATTTGCGCTGATTTGGATATTATAACATGATTTTTCCGTAATAAAGCACTTTTAGGAAAATGAATAAGGTTTTCTTACAAAGCTTAAACTTCTTGTGTTTCTATTTTCAAAAGAAATATGAAATTCAAAATAATGGGTAGAGCTCAAAGTTAGTTTGTTTTGTTTTAAATTGAAAACACACTATGTAAGGATATATAAAGGGCAAATCAAAGGGAGCCCATTTTTGTAATGATTTCCTTGAACTTTAGTATTTAACAATTTAGTCTCTATATATAATGATATGCAGATCAATAAACCGTTTAGAGATTAATTGTGTGTAAAACTACTATGACTTCACTTGATTAGATTTTTCATAGTAGGAGATAAATTGTTATAAATTTTAAACTACGGAGATTAAATCGTCACATACTAAAGCTTAAAGACTAGATTGTTACAAACTTAAAGTACACGGACCAAAAGTATTTTTCAACTAAAAAGGTTCTAGATCTGTGAAGTCTTAGTTTTCTTCGCATCTTTAGGGGGATGGATAGAGGTCCAGAAAATATTTGGTCCCTTACTAGGTTCCATGTATCTCTTTGGACGTCTGTTTCTAAGCTTTTTTGTAATGACCCATTGGGTCTTATCTTGCTTGGTTGAAGTCCTTTTCTTTAATGGGACTCCCTTTTGTGGGCTTTTTTTTTTTTTTTTTTTGTATGCGCTTGTATTCTTTCCTTCTTTCTCAATGAAAGTTGGTTTTTCATCTAAAAAAACATGCAAACAAGAAATTTCAAAATTTTTCCTTAGAATTTTGATTTATTCCATACAACACTACAAATTCTAAATCATTTTCATCTTTAAGTTATAATGGCTTCAAAACATTATCTTATACCAATCTACCCCCTCTTATATTCTCCGTCTCGCCAATACATTTTTGTTTCTTATTAAAAAAAATCTTATTCAAATTTAAATTTCAAATAGAGCTTAAGCCTTAAGTTTAAGAAAATTTGAAACAAGAAACGAAACTTTTCATTGATGAAATGAAAAGAGACTATTGCTCAAAAGATACAAACTCCACTAGGGAGTGAAACAAAACAAATAGAAATAAAAATTATTCATGAGAAATAAGAGCAAGCCAATTAAGATAAATATCCTGAATCGAGTAATTATCGAAATTCTTAGAGAGAGAACACCAAGATGACGCCTTTAAACGAGCTGAATCAAACCGATTGAACCAAAGCATATGCGAATTCTGAAAAATCCGTTGGTTTCTTTCCATCCACAATTCTGATAATAAAGCTTTGACAACATTGCACCATAAAAGATTGGAAGTTGGAGCCAAGGATGGCCCAATTAAGATAGAAGTGACGTTGTCCTTAAACATGTTGGAGAAGACCCAATGAAGATTGAAGAAGGAGAAAAGCTTGAACCAACACAATCGAGAGTAAAAGCACTCAAAGAAAATATGGTTCAAAGAATCCCCAGCCAAGCAACATAAGACAAACTGATGGCATAAGATAATGAGAAGAGAGCTTCCTTTGCAAAACATTTGAAGAATTTAAGGAACCATTAAGCATGATCCACACAAGGATGGAAGGATATATCTAGGCTTAAGCTGATGGCTTAAGCCTTAAGCCTTAAGTTTAAGGAACTCATGTACTGGGAACATCATGCTAACTTATGCCTAAAGTATTGCCTAAAGTATTTAGATAGCAGGATATATCTAGGCTTTTAAATTTTAATATCCTAGTAGCAATGGGGTTTGAACCCATTCTCCCAAAGTACTTCAACTTTTTCACTTGTCCTGATGACAACTAATGGTTGGAACTTGACTTTGTATTGTGAATGATTTTGGAGGAGAGTTTGTGTGAGTTCTTGTGGCACAATGTTATTGTTAACAAATAACAAGTTACATTCCACTTAGTGGGATTTTCATGTGGTCATTGACAATCTTCATCATAACTTTGGAAATTCATTTCATAGGGCTTATGTTGCTTCTCTTCTGGGTCCTTTTATCCTCTAATGCATGTGTTCTTCTCTAGGAGGATCATTGTATTGGCACCTTCTCTCTGTATACTCTTTTCTATTTTATGTCCTTAACAATTTCAAATTTGAAGTTATTTTCCTTTTTCCCTTTTTCACTTTTCACTTTCCATCTTGTATTGATTGCAATTCTCGAAGTAATCACGATGATAGAAAAACATTGGATCTTTTTTTCTTGTCTTACAAATTCTATAGGAGATGTTCTTCAATCCTAGGTTGAGGACGAAAGGTGTGGTATCGGGTTTTTTTTTCATGAAGAAACCAAGAAAGTGTGGTATCTTCATTTATTGGGGTCTTTTCTCATTCCTCTTTCTTTTCTAATTTTTTCCCACACCTTCCTATGATGCACCTCTTTCTTTTTTTTCTTTTTTTTTTTTTTTCTGGATGATGATTACTGGTGGCTGTATTGGGGTTTCTCTGAGTCTGAACTATGGGGTCAACATGATTGGCTGTGCTTGTATCTTGGATGTGATAACATAAATGATAAATACCTAATTTATGTATGTCTGTATGTTGAAAATTGTTTATTGCTCATAATTGGTTGGTGAATTATAAAGTATTTTTCTATCATTTTTTTCAGTGCACATCTGAATTTCCCGCCATATTCACTGGATAAATGAAATTTCAATATTTTGCTAGGTGTGGGGAAAACTTCTCTAGTTCATCTAATTGTAAACGGTTCTTCCATTTCTTGCCCTTCTCAAACTATTGGCTGTACAGTTGGAGTTAAGGTAAGACTCGTTTGTCACAATTGACACCAGTTATTCTTGAATGTTTACTATTTATTGATTATTATATTTACTATTTTGATAGCATATCACTTATGGAAATGCTGGTAGCTCTTCAAGTAGCATAAAAGGTGATGCCGAGAGAGATTTCTTTGTTGAACTTTGGGATGTGTCAGGGCATGAGCGCTACAAAGACTGTCGTTCTCTTTTCTATTCGCAGATCAATGGTAAGATCTCTGTACCTGTCAGTTTTTCGACTTCTCCGAATGTCTTATTCTTCGGTATGTTGCCTAGACAATTTTGGAAAGAACTAATGATTGACAATGTACTGGTACTATCTGGGAGGTATATCCTCGTTCTATGGCATATTTCTTAAGTTTCTTTTTTTGAAGAAGAAACAATATTTCATTGAAAAAGAGAATAGAAGTACAAGCTACCAAAGACTACACATTGTATACTTTGGAAAGAAAAGATTAAAACAGCATCAAAGTAAAAATAGTATGTCCATCAAAGATCCTTGATAATAAGCTCCATGGGAATCTTTGATTTTGATAACATAAAAGCAGTCCACACAGTCAAGAGATTTATCCTAAAAAAATTAGTATAATTGTAATGAGTGGCAAAATTAGGATAAATAATGGCAAATTTAGCAATTTTTAAAAATATTTGCAAATATGGCAAAATTTTTTAATTATTTTTTTATATCCCCGTTTTGCCCTTGAATTGTGCACGCTCTTCTTTCCAGATCGCGTGGATTTCTCTCCTCTCTTTTTCATTTGGTAGGTTTCTATCAGTGATAGAATTTTTCTATCACTGATAGAATCTATTAGTGATAGAAAAACTTTCTATCAGTGATAGAAATCTTCTATCACTGATAGAATTAACTTTCTATCAGTGATAGAAATCTTCTATCACTGATAGAATTAACTTTCTATCAGTGATAGAAGTTTTTTATCACTGATAGAATCTATCAGTGATAGAAAAACATTCTATCCGTCATAAAAGTAGAATTAACTTTCTATCAGTGATAGAAGTTTTCTATCACTGATATAATTAACTTTCTATCAGTGATAGAAGTTTTCTATCACTTCTATCACTGATAAAAAACTTTCTATCAGTGCCTGTGTCATGCTGATATATCAGTGATAGAAGTTTGAAAGCTTATAGTGATAGAAAGGTTTCTATCAGTGATAGAAAGACTTTCTATCACAAATAGAAAAACTTTATATTAGATAGAAATAGGATATAACGACCAAACACTGATAGAAATAGGATAGAAGGATAGCATCTATATCTATTAGTGATAGAAAGACTTTCTATCACTAATAGAAAGAGATTCTATCTTATAGAAAGACTTTATATCGCTGATATAAATACTTTCTATCAGATAGAATCCATCTCTATTAGTGATAGAAAGTTTCTATTTCTATCAGATAGAAAGTTCTTCTATCCGATAGAATCTCTTTCTATCACTGATAGATTCTATCAGTGATAGAAAATATGAGAAACGAAACAACACCAACCAAACACCTACCAAACAACAACCAAACACCTTATAAAAAAAACACACTGATAGAAAGTCTTTCTATCTGATAGAAAGACTTTCTATTGATTGAAAAAGTTTCTATCAGATAGAAAGGGCATTTTAGTAAATACACATTCCAGAACTTAAAATTTTGCCATTTTTGCAAAATTTTCCGCGGACCGCTAAATCTGCAAATATTTTGGGCCGGTTTGCTATATTTGCAACCGGCCCAAAAAATTATTTGATTTCATTCCAGCCAAATATCCGATAAAATTGCTTTTGATGTATTAATCTAAAGTAACTTAGCTTTGATGGGAAGAATGGGACTGCATAGTAGATGGAGGATGTTTGATCTAGAATCCTCCCCAAAAATGATAAACCCAACTCATGTTCAATTGAGAGAATAAGGGGCTCCCACGCTAGCTAGAGTAAGAGCATTGAAATAGTAAATGATCCTGACTTTCAATTGCTTGCATGAAAAACATAAGGGGAAATCATCATAAAAGAAAGTTTCCTTTGATGATGCACTGAAGTATTAATGCCTTGAGAGATCAAAATCCATTAAAAAAAACTGATCTTCTATGGACGCCTGGGTTTCCAGATAGCCTTGAAAAGAATAGAAGGTGATGGAGAACTATTTGAAAGCTTGTTAAAGAAAGGATTTAACTAAGAAAAAACCCAAGGTATCCAGAGACCAAATTTTGGATCCTCCCTGTGACAAATCTGTATTTGGTCTAATATAGACAGCATAGAGCTTAATTGATCAGATTCATCATCTTTCAAGTGTCTTCTTAATAAAACCTTCCATGAGCATGATGTGGAATCCCAAGCTTCAGAAACTAAACCATTTGAGAATGAAGCAATGTTAGGAAGTTTGACCATCAGAGGAGAAGAATCCACCCATGCATCGATCCAAATTTTGATTCCGTTGCCATTTCCCAATTTGATTTCAAAAGTTGTGGAAGTTTCTCTCTCTCTACCTCAATACTATTTGTATCGATGGTTTCTCCTTGTGGCTATCAGGTATCCATGGGTCTTCGAGGGCATCCCATGA

mRNA sequence

ATGTTCTGGAAGGACCGTGATAGGGAGAACAAAGAACTCAATGGCGGTCCTCTCTGTGGGCAGGTTCGAGTGCTTGTGGTTGGTGATTCAGGTGTGGGGAAAACTTCTCTAGTTCATCTAATTGTAAACGGTTCTTCCATTTCTTGCCCTTCTCAAACTATTGGCTGTACAGTTGGAGTTAAGCATATCACTTATGGAAATGCTGGTAGCTCTTCAAGTAGCATAAAAGGTGATGCCGAGAGAGATTTCTTTGTTGAACTTTGGGATGTGTCAGGGCATGAGCGCTACAAAGACTGTCGTTCTCTTTTCTATTCGCAGATCAATGGTAAGATCTCTGTACCTGTCAGTTTTTCGACTTCTCCGAATGTCTTATTCTTCGATTCATCATCTTTCAAGTGTCTTCTTAATAAAACCTTCCATGAGCATGATGTGGAATCCCAAGCTTCAGAAACTAAACCATTTGAGAATGAAGCAATGTTAGGAAGTTTGACCATCAGAGGAGAAGAATCCACCCATGCATCGATCCAAATTTTGATTCCGTTGCCATTTCCCAATTTGATTTCAAAAGTTGTGGAAGTTTCTCTCTCTCTACCTCAATACTATTTGTATCGATGGTTTCTCCTTGTGGCTATCAGGTATCCATGGGTCTTCGAGGGCATCCCATGA

Coding sequence (CDS)

ATGTTCTGGAAGGACCGTGATAGGGAGAACAAAGAACTCAATGGCGGTCCTCTCTGTGGGCAGGTTCGAGTGCTTGTGGTTGGTGATTCAGGTGTGGGGAAAACTTCTCTAGTTCATCTAATTGTAAACGGTTCTTCCATTTCTTGCCCTTCTCAAACTATTGGCTGTACAGTTGGAGTTAAGCATATCACTTATGGAAATGCTGGTAGCTCTTCAAGTAGCATAAAAGGTGATGCCGAGAGAGATTTCTTTGTTGAACTTTGGGATGTGTCAGGGCATGAGCGCTACAAAGACTGTCGTTCTCTTTTCTATTCGCAGATCAATGGTAAGATCTCTGTACCTGTCAGTTTTTCGACTTCTCCGAATGTCTTATTCTTCGATTCATCATCTTTCAAGTGTCTTCTTAATAAAACCTTCCATGAGCATGATGTGGAATCCCAAGCTTCAGAAACTAAACCATTTGAGAATGAAGCAATGTTAGGAAGTTTGACCATCAGAGGAGAAGAATCCACCCATGCATCGATCCAAATTTTGATTCCGTTGCCATTTCCCAATTTGATTTCAAAAGTTGTGGAAGTTTCTCTCTCTCTACCTCAATACTATTTGTATCGATGGTTTCTCCTTGTGGCTATCAGGTATCCATGGGTCTTCGAGGGCATCCCATGA

Protein sequence

MFWKDRDRENKELNGGPLCGQVRVLVVGDSGVGKTSLVHLIVNGSSISCPSQTIGCTVGVKHITYGNAGSSSSSIKGDAERDFFVELWDVSGHERYKDCRSLFYSQINGKISVPVSFSTSPNVLFFDSSSFKCLLNKTFHEHDVESQASETKPFENEAMLGSLTIRGEESTHASIQILIPLPFPNLISKVVEVSLSLPQYYLYRWFLLVAIRYPWVFEGIP

Homology

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BLAST of Lag0007948.1 vs. NCBI nr
Match: XP_038901123.1 (small GTPase LIP1 [Benincasa hispida])

HSP 1 Score: 228.0 bits (580), Expect = 7.8e-56
Identity = 109/113 (96.46%), Postives = 111/113 (98.23%), Query Frame = 0


Query: 1   MFWKDRDRENKELNGGPLCGQVRVLVVGDSGVGKTSLVHLIVNGSSISCPSQTIGCTVGV 60
           MFWKDRDRE+KELNGGPLCGQVRVLVVGDSGVGKTSLVHLIVNG+SISCPSQTIGCTVGV
Sbjct: 1   MFWKDRDREHKELNGGPLCGQVRVLVVGDSGVGKTSLVHLIVNGASISCPSQTIGCTVGV 60

Query: 61  KHITYGNAGSSSSSIKGDAERDFFVELWDVSGHERYKDCRSLFYSQINGKISV 114
           KHITYGNAGSSSSSIKGDAERDFFVELWDVSGHERYKDCRSLFYSQING I V
Sbjct: 61  KHITYGNAGSSSSSIKGDAERDFFVELWDVSGHERYKDCRSLFYSQINGVIFV 113

[Close]

BLAST of Lag0007948.1 vs. NCBI nr
Match: XP_023533303.1 (small GTPase LIP1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 226.9 bits (577), Expect = 1.7e-55
Identity = 109/113 (96.46%), Postives = 110/113 (97.35%), Query Frame = 0


Query: 1   MFWKDRDRENKELNGGPLCGQVRVLVVGDSGVGKTSLVHLIVNGSSISCPSQTIGCTVGV 60
           MFWKDRDR+NKELNGGPLCGQVRVLVVGDSGVGKTSLVHLIVNGSSISC SQTIGCTVGV
Sbjct: 1   MFWKDRDRDNKELNGGPLCGQVRVLVVGDSGVGKTSLVHLIVNGSSISCSSQTIGCTVGV 60

Query: 61  KHITYGNAGSSSSSIKGDAERDFFVELWDVSGHERYKDCRSLFYSQINGKISV 114
           KHITYGNAGSSSSSIKGDAERDFFVELWDVSGHERYKDCRSLFYSQING I V
Sbjct: 61  KHITYGNAGSSSSSIKGDAERDFFVELWDVSGHERYKDCRSLFYSQINGVIFV 113

[Close]

BLAST of Lag0007948.1 vs. NCBI nr
Match: XP_022157745.1 (small GTPase LIP1 isoform X2 [Momordica charantia])

HSP 1 Score: 226.9 bits (577), Expect = 1.7e-55
Identity = 109/113 (96.46%), Postives = 109/113 (96.46%), Query Frame = 0


Query: 1   MFWKDRDRENKELNGGPLCGQVRVLVVGDSGVGKTSLVHLIVNGSSISCPSQTIGCTVGV 60
           MFWKDRDRENKELNG PLCGQVRVLVVGDSGVGKTSLVHLIVNGSS SCPSQTIGCTVGV
Sbjct: 1   MFWKDRDRENKELNGAPLCGQVRVLVVGDSGVGKTSLVHLIVNGSSTSCPSQTIGCTVGV 60

Query: 61  KHITYGNAGSSSSSIKGDAERDFFVELWDVSGHERYKDCRSLFYSQINGKISV 114
           KHITYGNAGSSSSSIKGDAERDFFVELWDVSGHERYKDCRSLFYSQING I V
Sbjct: 61  KHITYGNAGSSSSSIKGDAERDFFVELWDVSGHERYKDCRSLFYSQINGVIFV 113

[Close]

BLAST of Lag0007948.1 vs. NCBI nr
Match: XP_022947826.1 (small GTPase LIP1-like [Cucurbita moschata])

HSP 1 Score: 226.9 bits (577), Expect = 1.7e-55
Identity = 109/113 (96.46%), Postives = 110/113 (97.35%), Query Frame = 0


Query: 1   MFWKDRDRENKELNGGPLCGQVRVLVVGDSGVGKTSLVHLIVNGSSISCPSQTIGCTVGV 60
           MFWKDRDR+NKELNGGPLCGQVRVLVVGDSGVGKTSLVHLIVNGSSISC SQTIGCTVGV
Sbjct: 1   MFWKDRDRDNKELNGGPLCGQVRVLVVGDSGVGKTSLVHLIVNGSSISCSSQTIGCTVGV 60

Query: 61  KHITYGNAGSSSSSIKGDAERDFFVELWDVSGHERYKDCRSLFYSQINGKISV 114
           KHITYGNAGSSSSSIKGDAERDFFVELWDVSGHERYKDCRSLFYSQING I V
Sbjct: 61  KHITYGNAGSSSSSIKGDAERDFFVELWDVSGHERYKDCRSLFYSQINGVIFV 113

[Close]

BLAST of Lag0007948.1 vs. NCBI nr
Match: KAG7035249.1 (Small GTPase LIP1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 226.9 bits (577), Expect = 1.7e-55
Identity = 109/113 (96.46%), Postives = 110/113 (97.35%), Query Frame = 0


Query: 1   MFWKDRDRENKELNGGPLCGQVRVLVVGDSGVGKTSLVHLIVNGSSISCPSQTIGCTVGV 60
           MFWKDRDR+NKELNGGPLCGQVRVLVVGDSGVGKTSLVHLIVNGSSISC SQTIGCTVGV
Sbjct: 1   MFWKDRDRDNKELNGGPLCGQVRVLVVGDSGVGKTSLVHLIVNGSSISCSSQTIGCTVGV 60

Query: 61  KHITYGNAGSSSSSIKGDAERDFFVELWDVSGHERYKDCRSLFYSQINGKISV 114
           KHITYGNAGSSSSSIKGDAERDFFVELWDVSGHERYKDCRSLFYSQING I V
Sbjct: 61  KHITYGNAGSSSSSIKGDAERDFFVELWDVSGHERYKDCRSLFYSQINGVIFV 113

[Close]

BLAST of Lag0007948.1 vs. ExPASy Swiss-Prot
Match: Q9C5J9 (Small GTPase LIP1 OS=Arabidopsis thaliana OX=3702 GN=LIP1 PE=1 SV=1)

HSP 1 Score: 189.9 bits (481), Expect = 3.1e-47
Identity = 93/112 (83.04%), Postives = 99/112 (88.39%), Query Frame = 0


Query: 2   FWKDRDRENKELNGGPLCGQVRVLVVGDSGVGKTSLVHLIVNGSSISCPSQTIGCTVGVK 61
           FW++R+RENKE    PLCGQVRVLVVGDSGVGKTSLVHLI  GSSI  P QTIGCTVGVK
Sbjct: 3   FWRERERENKEQILAPLCGQVRVLVVGDSGVGKTSLVHLINKGSSIVRPPQTIGCTVGVK 62

Query: 62  HITYGNAGSSSSSIKGDAERDFFVELWDVSGHERYKDCRSLFYSQINGKISV 114
           HITYG+  SSSSSI+GD+ERDFFVELWDVSGHERYKDCRSLFYSQING I V
Sbjct: 63  HITYGSPASSSSSIQGDSERDFFVELWDVSGHERYKDCRSLFYSQINGVIFV 114

[Close]

BLAST of Lag0007948.1 vs. ExPASy Swiss-Prot
Match: F4KFD8 (Small GTPase-like protein LIP2 OS=Arabidopsis thaliana OX=3702 GN=LIP2 PE=3 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 1.2e-46
Identity = 91/112 (81.25%), Postives = 98/112 (87.50%), Query Frame = 0


Query: 2   FWKDRDRENKELNGGPLCGQVRVLVVGDSGVGKTSLVHLIVNGSSISCPSQTIGCTVGVK 61
           FW++R RENKE    PLCGQ+RVLVVGDSGVGK+SLVHLIV GSSI  PSQTIGCTVGVK
Sbjct: 3   FWRERGRENKEHMVAPLCGQIRVLVVGDSGVGKSSLVHLIVKGSSIVRPSQTIGCTVGVK 62

Query: 62  HITYGNAGSSSSSIKGDAERDFFVELWDVSGHERYKDCRSLFYSQINGKISV 114
           H+TY +  SSSS IKGD+ERDFFVELWDVSGHERYKDCRSLFYSQING I V
Sbjct: 63  HLTYASPASSSSIIKGDSERDFFVELWDVSGHERYKDCRSLFYSQINGVIFV 114

[Close]

BLAST of Lag0007948.1 vs. ExPASy Swiss-Prot
Match: Q6TNS7 (Rab-like protein 3 OS=Danio rerio OX=7955 GN=rabl3 PE=2 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 7.2e-12
Identity = 40/97 (41.24%), Postives = 56/97 (57.73%), Query Frame = 0


Query: 21  QVRVLVVGDSGVGKTSLVHLIVNGSSISCPSQTIGCTVGVKHITYGNAGSSSSSIKGDAE 80
           +V+VLV+GDSGVGK+SLVHL+     +  PS T+GC+V V+   Y              E
Sbjct: 6   RVKVLVLGDSGVGKSSLVHLLCQNQVLGNPSWTVGCSVDVRVHDYREGTPE--------E 65

Query: 81  RDFFVELWDVSGH----ERYKDCRSLFYSQINGKISV 114
           + F++ELWDV G        K  R++FY+ +NG I V
Sbjct: 66  KAFYIELWDVGGSVGSASSVKSTRAVFYNSVNGIILV 94

[Close]

BLAST of Lag0007948.1 vs. ExPASy Swiss-Prot
Match: Q32LJ6 (Rab-like protein 3 OS=Bos taurus OX=9913 GN=RABL3 PE=2 SV=2)

HSP 1 Score: 71.6 bits (174), Expect = 1.2e-11
Identity = 39/97 (40.21%), Postives = 56/97 (57.73%), Query Frame = 0


Query: 21  QVRVLVVGDSGVGKTSLVHLIVNGSSISCPSQTIGCTVGVKHITYGNAGSSSSSIKGDAE 80
           +V+VLV+GDSGVGK+SLVHL+     +  PS T+GC+V V+   Y              E
Sbjct: 6   RVKVLVLGDSGVGKSSLVHLLCQNQVLGNPSWTVGCSVDVRVHDYKEGTPE--------E 65

Query: 81  RDFFVELWDVSGH----ERYKDCRSLFYSQINGKISV 114
           + +++ELWDV G        K  R++FY+ +NG I V
Sbjct: 66  KTYYIELWDVGGSVGSASSVKSTRAVFYNSVNGIILV 94

[Close]

BLAST of Lag0007948.1 vs. ExPASy Swiss-Prot
Match: Q5HYI8 (Rab-like protein 3 OS=Homo sapiens OX=9606 GN=RABL3 PE=1 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 1.2e-11
Identity = 39/97 (40.21%), Postives = 56/97 (57.73%), Query Frame = 0


Query: 21  QVRVLVVGDSGVGKTSLVHLIVNGSSISCPSQTIGCTVGVKHITYGNAGSSSSSIKGDAE 80
           +V+VLV+GDSGVGK+SLVHL+     +  PS T+GC+V V+   Y              E
Sbjct: 6   RVKVLVLGDSGVGKSSLVHLLCQNQVLGNPSWTVGCSVDVRVHDYKEGTPE--------E 65

Query: 81  RDFFVELWDVSGH----ERYKDCRSLFYSQINGKISV 114
           + +++ELWDV G        K  R++FY+ +NG I V
Sbjct: 66  KTYYIELWDVGGSVGSASSVKSTRAVFYNSVNGIIFV 94

[Close]

BLAST of Lag0007948.1 vs. ExPASy TrEMBL
Match: A0A6J1KZF8 (small GTPase LIP1-like OS=Cucurbita maxima OX=3661 GN=LOC111499650 PE=4 SV=1)

HSP 1 Score: 226.9 bits (577), Expect = 8.4e-56
Identity = 109/113 (96.46%), Postives = 110/113 (97.35%), Query Frame = 0


Query: 1   MFWKDRDRENKELNGGPLCGQVRVLVVGDSGVGKTSLVHLIVNGSSISCPSQTIGCTVGV 60
           MFWKDRDR+NKELNGGPLCGQVRVLVVGDSGVGKTSLVHLIVNGSSISC SQTIGCTVGV
Sbjct: 1   MFWKDRDRDNKELNGGPLCGQVRVLVVGDSGVGKTSLVHLIVNGSSISCSSQTIGCTVGV 60

Query: 61  KHITYGNAGSSSSSIKGDAERDFFVELWDVSGHERYKDCRSLFYSQINGKISV 114
           KHITYGNAGSSSSSIKGDAERDFFVELWDVSGHERYKDCRSLFYSQING I V
Sbjct: 61  KHITYGNAGSSSSSIKGDAERDFFVELWDVSGHERYKDCRSLFYSQINGVIFV 113

[Close]

BLAST of Lag0007948.1 vs. ExPASy TrEMBL
Match: A0A6J1DXF4 (small GTPase LIP1 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111024381 PE=4 SV=1)

HSP 1 Score: 226.9 bits (577), Expect = 8.4e-56
Identity = 109/113 (96.46%), Postives = 109/113 (96.46%), Query Frame = 0


Query: 1   MFWKDRDRENKELNGGPLCGQVRVLVVGDSGVGKTSLVHLIVNGSSISCPSQTIGCTVGV 60
           MFWKDRDRENKELNG PLCGQVRVLVVGDSGVGKTSLVHLIVNGSS SCPSQTIGCTVGV
Sbjct: 1   MFWKDRDRENKELNGAPLCGQVRVLVVGDSGVGKTSLVHLIVNGSSTSCPSQTIGCTVGV 60

Query: 61  KHITYGNAGSSSSSIKGDAERDFFVELWDVSGHERYKDCRSLFYSQINGKISV 114
           KHITYGNAGSSSSSIKGDAERDFFVELWDVSGHERYKDCRSLFYSQING I V
Sbjct: 61  KHITYGNAGSSSSSIKGDAERDFFVELWDVSGHERYKDCRSLFYSQINGVIFV 113

[Close]

BLAST of Lag0007948.1 vs. ExPASy TrEMBL
Match: A0A6J1DTZ0 (small GTPase LIP1 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111024381 PE=4 SV=1)

HSP 1 Score: 226.9 bits (577), Expect = 8.4e-56
Identity = 109/113 (96.46%), Postives = 109/113 (96.46%), Query Frame = 0


Query: 1   MFWKDRDRENKELNGGPLCGQVRVLVVGDSGVGKTSLVHLIVNGSSISCPSQTIGCTVGV 60
           MFWKDRDRENKELNG PLCGQVRVLVVGDSGVGKTSLVHLIVNGSS SCPSQTIGCTVGV
Sbjct: 1   MFWKDRDRENKELNGAPLCGQVRVLVVGDSGVGKTSLVHLIVNGSSTSCPSQTIGCTVGV 60

Query: 61  KHITYGNAGSSSSSIKGDAERDFFVELWDVSGHERYKDCRSLFYSQINGKISV 114
           KHITYGNAGSSSSSIKGDAERDFFVELWDVSGHERYKDCRSLFYSQING I V
Sbjct: 61  KHITYGNAGSSSSSIKGDAERDFFVELWDVSGHERYKDCRSLFYSQINGVIFV 113

[Close]

BLAST of Lag0007948.1 vs. ExPASy TrEMBL
Match: A0A6J1G7J8 (small GTPase LIP1-like OS=Cucurbita moschata OX=3662 GN=LOC111451586 PE=4 SV=1)

HSP 1 Score: 226.9 bits (577), Expect = 8.4e-56
Identity = 109/113 (96.46%), Postives = 110/113 (97.35%), Query Frame = 0


Query: 1   MFWKDRDRENKELNGGPLCGQVRVLVVGDSGVGKTSLVHLIVNGSSISCPSQTIGCTVGV 60
           MFWKDRDR+NKELNGGPLCGQVRVLVVGDSGVGKTSLVHLIVNGSSISC SQTIGCTVGV
Sbjct: 1   MFWKDRDRDNKELNGGPLCGQVRVLVVGDSGVGKTSLVHLIVNGSSISCSSQTIGCTVGV 60

Query: 61  KHITYGNAGSSSSSIKGDAERDFFVELWDVSGHERYKDCRSLFYSQINGKISV 114
           KHITYGNAGSSSSSIKGDAERDFFVELWDVSGHERYKDCRSLFYSQING I V
Sbjct: 61  KHITYGNAGSSSSSIKGDAERDFFVELWDVSGHERYKDCRSLFYSQINGVIFV 113

[Close]

BLAST of Lag0007948.1 vs. ExPASy TrEMBL
Match: A0A5D3CQH6 (Putative GTP-binding protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold299G002130 PE=4 SV=1)

HSP 1 Score: 224.2 bits (570), Expect = 5.5e-55
Identity = 108/113 (95.58%), Postives = 110/113 (97.35%), Query Frame = 0


Query: 1   MFWKDRDRENKELNGGPLCGQVRVLVVGDSGVGKTSLVHLIVNGSSISCPSQTIGCTVGV 60
           MFWKDRDRE+KELNGGPLCGQVRVLVVGDSGVGKTSLVHLIVNGSSIS PSQTIGCTVGV
Sbjct: 1   MFWKDRDREHKELNGGPLCGQVRVLVVGDSGVGKTSLVHLIVNGSSISSPSQTIGCTVGV 60

Query: 61  KHITYGNAGSSSSSIKGDAERDFFVELWDVSGHERYKDCRSLFYSQINGKISV 114
           KHITYGNAGSSSSSIKGDAERDFFVELWDVSGH+RYKDCRSLFYSQING I V
Sbjct: 61  KHITYGNAGSSSSSIKGDAERDFFVELWDVSGHDRYKDCRSLFYSQINGVIFV 113

[Close]

BLAST of Lag0007948.1 vs. TAIR 10
Match: AT5G64813.1 (Ras-related small GTP-binding family protein )

HSP 1 Score: 189.9 bits (481), Expect = 2.2e-48
Identity = 93/112 (83.04%), Postives = 99/112 (88.39%), Query Frame = 0


Query: 2   FWKDRDRENKELNGGPLCGQVRVLVVGDSGVGKTSLVHLIVNGSSISCPSQTIGCTVGVK 61
           FW++R+RENKE    PLCGQVRVLVVGDSGVGKTSLVHLI  GSSI  P QTIGCTVGVK
Sbjct: 3   FWRERERENKEQILAPLCGQVRVLVVGDSGVGKTSLVHLINKGSSIVRPPQTIGCTVGVK 62

Query: 62  HITYGNAGSSSSSIKGDAERDFFVELWDVSGHERYKDCRSLFYSQINGKISV 114
           HITYG+  SSSSSI+GD+ERDFFVELWDVSGHERYKDCRSLFYSQING I V
Sbjct: 63  HITYGSPASSSSSIQGDSERDFFVELWDVSGHERYKDCRSLFYSQINGVIFV 114

[Close]

BLAST of Lag0007948.1 vs. TAIR 10
Match: AT5G09910.1 (Ras-related small GTP-binding family protein )

HSP 1 Score: 188.0 bits (476), Expect = 8.4e-48
Identity = 91/112 (81.25%), Postives = 98/112 (87.50%), Query Frame = 0


Query: 2   FWKDRDRENKELNGGPLCGQVRVLVVGDSGVGKTSLVHLIVNGSSISCPSQTIGCTVGVK 61
           FW++R RENKE    PLCGQ+RVLVVGDSGVGK+SLVHLIV GSSI  PSQTIGCTVGVK
Sbjct: 3   FWRERGRENKEHMVAPLCGQIRVLVVGDSGVGKSSLVHLIVKGSSIVRPSQTIGCTVGVK 62

Query: 62  HITYGNAGSSSSSIKGDAERDFFVELWDVSGHERYKDCRSLFYSQINGKISV 114
           H+TY +  SSSS IKGD+ERDFFVELWDVSGHERYKDCRSLFYSQING I V
Sbjct: 63  HLTYASPASSSSIIKGDSERDFFVELWDVSGHERYKDCRSLFYSQINGVIFV 114

[Close]

BLAST of Lag0007948.1 vs. TAIR 10
Match: AT1G43890.1 (RAB GTPASE HOMOLOG B18 )

HSP 1 Score: 49.7 bits (117), Expect = 3.6e-06
Identity = 31/91 (34.07%), Postives = 47/91 (51.65%), Query Frame = 0


Query: 23  RVLVVGDSGVGKTSLVHLIVNGSSISCPSQTIGCTVGVKHITYGNAGSSSSSIKGDAERD 82
           +VL++GDSGVGK+SL+ L    ++    S TIG    VK++T G             E+ 
Sbjct: 15  KVLLIGDSGVGKSSLL-LSFTSNTFDDLSPTIGVDFKVKYLTIG-------------EKK 74

Query: 83  FFVELWDVSGHERYKDCRSLFYSQINGKISV 114
             + +WD +G ER++   S +Y    G I V
Sbjct: 75  LKLAIWDTAGQERFRTLTSSYYRGAQGIIMV 91

[Close]

BLAST of Lag0007948.1 vs. TAIR 10
Match: AT1G43890.2 (RAB GTPASE HOMOLOG B18 )

HSP 1 Score: 49.7 bits (117), Expect = 3.6e-06
Identity = 31/91 (34.07%), Postives = 47/91 (51.65%), Query Frame = 0


Query: 23  RVLVVGDSGVGKTSLVHLIVNGSSISCPSQTIGCTVGVKHITYGNAGSSSSSIKGDAERD 82
           +VL++GDSGVGK+SL+ L    ++    S TIG    VK++T G             E+ 
Sbjct: 15  KVLLIGDSGVGKSSLL-LSFTSNTFDDLSPTIGVDFKVKYLTIG-------------EKK 74

Query: 83  FFVELWDVSGHERYKDCRSLFYSQINGKISV 114
             + +WD +G ER++   S +Y    G I V
Sbjct: 75  LKLAIWDTAGQERFRTLTSSYYRGAQGIIMV 91

[Close]

BLAST of Lag0007948.1 vs. TAIR 10
Match: AT1G43890.3 (RAB GTPASE HOMOLOG B18 )

HSP 1 Score: 49.7 bits (117), Expect = 3.6e-06
Identity = 31/91 (34.07%), Postives = 47/91 (51.65%), Query Frame = 0


Query: 23  RVLVVGDSGVGKTSLVHLIVNGSSISCPSQTIGCTVGVKHITYGNAGSSSSSIKGDAERD 82
           +VL++GDSGVGK+SL+ L    ++    S TIG    VK++T G             E+ 
Sbjct: 15  KVLLIGDSGVGKSSLL-LSFTSNTFDDLSPTIGVDFKVKYLTIG-------------EKK 74

Query: 83  FFVELWDVSGHERYKDCRSLFYSQINGKISV 114
             + +WD +G ER++   S +Y    G I V
Sbjct: 75  LKLAIWDTAGQERFRTLTSSYYRGAQGIIMV 91

The following BLAST results are available for this feature:

BLAST of Lag0007948.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038901123.1	7.8e-56	96.46	small GTPase LIP1 [Benincasa hispida]	[more]
XP_023533303.1	1.7e-55	96.46	small GTPase LIP1-like [Cucurbita pepo subsp. pepo]	[more]
XP_022157745.1	1.7e-55	96.46	small GTPase LIP1 isoform X2 [Momordica charantia]	[more]
XP_022947826.1	1.7e-55	96.46	small GTPase LIP1-like [Cucurbita moschata]	[more]
KAG7035249.1	1.7e-55	96.46	Small GTPase LIP1 [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of Lag0007948.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9C5J9	3.1e-47	83.04	Small GTPase LIP1 OS=Arabidopsis thaliana OX=3702 GN=LIP1 PE=1 SV=1	[more]
F4KFD8	1.2e-46	81.25	Small GTPase-like protein LIP2 OS=Arabidopsis thaliana OX=3702 GN=LIP2 PE=3 SV=1	[more]
Q6TNS7	7.2e-12	41.24	Rab-like protein 3 OS=Danio rerio OX=7955 GN=rabl3 PE=2 SV=1	[more]
Q32LJ6	1.2e-11	40.21	Rab-like protein 3 OS=Bos taurus OX=9913 GN=RABL3 PE=2 SV=2	[more]
Q5HYI8	1.2e-11	40.21	Rab-like protein 3 OS=Homo sapiens OX=9606 GN=RABL3 PE=1 SV=1	[more]

BLAST of Lag0007948.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KZF8	8.4e-56	96.46	small GTPase LIP1-like OS=Cucurbita maxima OX=3661 GN=LOC111499650 PE=4 SV=1	[more]
A0A6J1DXF4	8.4e-56	96.46	small GTPase LIP1 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111024381 PE=4...	[more]
A0A6J1DTZ0	8.4e-56	96.46	small GTPase LIP1 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111024381 PE=4...	[more]
A0A6J1G7J8	8.4e-56	96.46	small GTPase LIP1-like OS=Cucurbita moschata OX=3662 GN=LOC111451586 PE=4 SV=1	[more]
A0A5D3CQH6	5.5e-55	95.58	Putative GTP-binding protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]

BLAST of Lag0007948.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G64813.1	2.2e-48	83.04	Ras-related small GTP-binding family protein	[more]
AT5G09910.1	8.4e-48	81.25	Ras-related small GTP-binding family protein	[more]
AT1G43890.1	3.6e-06	34.07	RAB GTPASE HOMOLOG B18	[more]
AT1G43890.2	3.6e-06	34.07	RAB GTPASE HOMOLOG B18	[more]
AT1G43890.3	3.6e-06	34.07	RAB GTPASE HOMOLOG B18	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR00449	RASTRNSFRMNG	coord: 76..98 score: 22.89 coord: 22..43 score: 38.66
None	No IPR available	SMART	SM00175	rab_sub_5	coord: 22..141 e-value: 0.0082 score: -74.6
None	No IPR available	PFAM	PF08477	Roc	coord: 23..112 e-value: 2.2E-12 score: 47.3
None	No IPR available	PANTHER	PTHR24073	DRAB5-RELATED	coord: 7..113
None	No IPR available	PANTHER	PTHR24073:SF1142	SMALL GTPASE LIP1	coord: 7..113
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	3.40.50.300		coord: 20..154 e-value: 1.4E-17 score: 65.6
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 21..119
IPR025662	Sigma-54 interaction domain, ATP-binding site 1	PROSITE	PS00675	SIGMA54_INTERACT_1	coord: 24..37

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lag0007948	Lag0007948	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lag0007948.1.exon1	Lag0007948.1.exon1	exon
Lag0007948.1.exon2	Lag0007948.1.exon2	exon
Lag0007948.1.exon3	Lag0007948.1.exon3	exon
Lag0007948.1.exon4	Lag0007948.1.exon4	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.Lag0007948.1	cds.Lag0007948.1	CDS
cds.Lag0007948.1	cds.Lag0007948.1_2	CDS
cds.Lag0007948.1	cds.Lag0007948.1_3	CDS
cds.Lag0007948.1	cds.Lag0007948.1_4	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lag0007948.1	Lag0007948.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006886	intracellular protein transport
cellular_component	GO:0012505	endomembrane system
molecular_function	GO:0003924	GTPase activity
molecular_function	GO:0005525	GTP binding