Lag0006397.1 (mRNA) Sponge gourd (AG‐4) v1

Overview
NameLag0006397.1
TypemRNA
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionUnknown protein
Locationchr6: 42039434 .. 42042936 (-)
Sequence length675
RNA-Seq ExpressionLag0006397.1
SyntenyLag0006397.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACCTAAGAGGCGAAACCGACAAGTGGGACGGGCCAAGACCGAAGGGGTCGGGCTTTTGGCCCTACCCCCTGCTCGGCCTCGACCATGGGCCGAGGCCGACCCTCAGCCCACTCGTGCGGGCCGAGCCCGTCGGGCCCCGTTTGGTCCCTGTAGCCTCTAACCGCCCCGGATCCGCCTGGTTTGTCCCGAAACGCCTCCGAACTCCTAAAAAACCCTAGGAGCATGAACATGTATTTATACCCCTCTTCGTCACTGAAGAAAGGGACCCGAACTGAATTATCGACTCTCTTCTCTTACTTTCCTGCTTTCCTCCCGTTTTCTGACTTAATCATCGGAGGCGGTGTGGCTTACACCACGCCGGTGTGCAGCGGTTTTTGCTGGTCTTGCAGGTCATGTCTTCTCCAGTTTCTACAAATTCACCGTTGATGTCACGTGAAGGTCAGGTGAGTCCCTAGGCCAAATTTTGGCATCAACAATTTAGCTGGTATAAAATATGTATTCTCCATCGAGAGATCAGATGTTCGAATTCTCCACCCCACACATATATATTAAAAAAAACGATATATGATTAGGACTTGTTGAAAGAATGATATATACCAACAATAATAGAGTGGCATGATTGGATGGGGCCACAACCATTGCATTATTTTACTTGAGAATAAAGCAAGTGGGAGAACAACATGTGACTTTGATTGAGCTTTGTTTTGAAGTGATCCTTGGTTTTTGGAACTCTGTCCCCACACATTTACAAACACCATTATTTAATATATCTTTAGAACACTTTTCTGGATTTGTTTTAATAAAGATCATTGGTATATATTATAATATAAAACTTTAATTTTGCAATTTTATTTATATACACACACATGAACATACTAAATTCTTGTAATATATAATATCTGCAAAAGCATGCCCTTGGATCTTTATGTGTATATTATAATACAAATGCTATCTTTATGTTTAATCAAAACCATAATATATATATAAACTTTATTGATTGAGGCTTTTTTTTTTTATTTTTTATTAAGTATGTTGGAATTGAAAACACACTTGTGTGTTCACAAGATATTTAAGGTGGTTTAATTTTTAGTCTCTAAGTTAATTCCTTACTAAATTTAGTATTTGTAGATTTAAAAATAGTGCACTTGTGTTAGATTTTTTAAATTAATATAGGATGATTGATGTGGTCTATGTATATTTGCACGAGATTTTATGAGTGTCTAGTAATTTTGATTGAAAAACAAATGACAATATATGAGATAAAAATAGAATATCTTGTTTTGACACTCTATATTAAATCGTTGTTATGTCCAAAATTTTAAATAGGTAGTTTAAGAAATACTTAATTTGTTAATATGTTGTCTTAACACTCATTTGTAGTATTTGTGGGTTTAAAGTTTAGTATAAGATCCAACAAGTGACTATCATAATATTAATTGGAGAAGAAGTTAATCACATGCACTAGACCACAAAAGTAAATATGCTATGTAGTCTCTTTCGATACTTGAAAATCAATGAATATTGATCGAATTCTTAATAAACAAGAGTTTCTACTAGAAGTTTGAAATATTTTAAATGAAAATCATTGATGTCACACATATTTGATATATTATGTTGTTATATTAATCCATCCCTCTCCTTATAAAACTTATGTTTCTCTTATCTATTCATACAAAATTTAGTGGTGGACAGTTATCTTTATATAATATAAAAACTTAAAATGATAAGTAAATGGACAAATCGATTTTGATGAGTTGTATAGAAAATGGCACACATGCGAGACATTGACAAATGAATACCTTTATAATTGACAACTCATCTGCAAACTTATTACTGAGAGCTCCTTGTATTCTCAAGCTCTAAACCATTAAACTTCAATGATTTTTTTTTTTTTTTTTTACATGTGGGGTCAAAGATTCGAACGATAGACCTCTTGATCATGAGTACAAACTTTATACCAGTTAAACTATGTCCATGTTAACTAAATTTCAATGATTGTTTTCTTGAGATTTTTCATTTCCTATCGAGATAACATAATTGGTTAAGAACCTTAATTATTTAATTTTGTACTGATATAATAGAAATATTTAGTTTTATAATATTTTGAATGACATGGCAAAAAAAAAGAAAAAAAAAATCTATCTCTACCTTTTTCGCCCTTGCCCCAACTCTCTCTTTCCTTGTTAATTCCATTCTCAATAATTTGTAAGTTTTTATATTTGTCTTCCAAATCTTTAGGAGCTATCAATAAGAGTTCACTTTTTGGGCGAAAAATTATATTTTCATTGATAATTATAAGACATTGGGATGGAATTGAAAAATAGAATATAATTTAGAAATTGCATACATTTAGCCTTTAATTTACACTACATACATTTATTTATTTTTTAATAAAAAAACCATATTTCTTCTTCAATTTTTTTTAGTACATCAACATTTTGGGGTGGGGGATTTGAACCTCGGACTTCTTAGTCGAAGATATATGCTAATTACCACTAAACTAAGTTCGCTTTGGCTTCAAATTTGGTTTGTTGCTTCTTTCCTTAAATTTATTTTTTCTTTATATATATATATATATATATATATATATATATTAAATTGTAATAACGTTTTGTTTGGTTGTCAAACAAATAATAATAATAAATAAACAAATAATAACGTTTCGTTTGATAATTTTTTATAATAAAAAATTTTCCCTAATATTTTATAAATAATATAGGAAAAATAAAATATAATTTGCAATTTAAATAAGTATCTTATAAAAATTTTTGTAATTAAATATCAACGGATTATTATGATAATTGAAATTCAATGTCTATTCCAATCATGATAGCTAAACCACGACTATTTAACTAACAATGTGACATGTTTTTCATTTTTAAACTAAAATTTATTAAAGACCTAAAAATTTACTTTATGTTACAACTTACGCTTTTAGAATCACTATAGAAACCAATTATTTTACCAATCATATTTAATCACAAACTAAATTAAATAATGTTATAGGCAATTTTGGACCACCCCGATATACAAGGAGCTGACGAGGACAACCGGGGAGAAATCGGACAGGAAGATGGACCAAGGAGGCAAAACCGGCAAGTGGGACGGGCCAAGACCGAAGGGGTCAGGTTTTTGGCCCGACCCCCTGCTCGCGCGGGCCGAGCCCGTTCGGTCTCGTCTGGTCTCCACCGCCTCTGGCTGCCCCGGTTTCGCCTGGTTTGACCTAAAACGCCTCCGAATACCTAAAAACCCTAGGAGGATGAGCAGGTATTTAGATCCCTCTTCGCCACTGAAGAGGGGATCCCGAATTCTATCCTTGAACTCTACTCTCTATTCTCTGCTTTCTCCTCTTGCTCTTACTTTTCCACGCCCTACCGTTCTGCTTGCTGACTTAAGCATCGGAGCCGGTGTGGCGAGCACCACACCGGTGTGCAGGTTTACTGTCTTGCAGGCCACGTCTTCCCCCCTCAACTACAAATTTACCGTTGGTGGCACGTGA

mRNA sequence

ATGGACCTAAGAGGCGAAACCGACAAGTGGGACGGGCCAAGACCGAAGGGGTCGGGCTTTTGGCCCTACCCCCTGCTCGGCCTCGACCATGGGCCGAGGCCGACCCTCAGCCCACTCGTGCGGGCCGAGCCCGTCGGGCCCCGTTTGGTCCCTGTAGCCTCTAACCGCCCCGGATCCGCCTGGCAATTTTGGACCACCCCGATATACAAGGAGCTGACGAGGACAACCGGGGAGAAATCGGACAGGAAGATGGACCAAGGAGGCAAAACCGGCAAGTGGGACGGGCCAAGACCGAAGGGGTCAGGTTTTTGGCCCGACCCCCTGCTCGCGCGGGCCGAGCCCGTTCGGTCTCGTCTGGTCTCCACCGCCTCTGGCTGCCCCGGTTTCGCCTGGTTTGACCTAAAACGCCTCCGAATACCTAAAAACCCTAGGAGGATGAGCAGGTATTTAGATCCCTCTTCGCCACTGAAGAGGGGATCCCGAATTCTATCCTTGAACTCTACTCTCTATTCTCTGCTTTCTCCTCTTGCTCTTACTTTTCCACGCCCTACCGTTCTGCTTGCTGACTTAAGCATCGGAGCCGGTGTGGCGAGCACCACACCGGTGTGCAGGTTTACTGTCTTGCAGGCCACGTCTTCCCCCCTCAACTACAAATTTACCGTTGGTGGCACGTGA

Coding sequence (CDS)

ATGGACCTAAGAGGCGAAACCGACAAGTGGGACGGGCCAAGACCGAAGGGGTCGGGCTTTTGGCCCTACCCCCTGCTCGGCCTCGACCATGGGCCGAGGCCGACCCTCAGCCCACTCGTGCGGGCCGAGCCCGTCGGGCCCCGTTTGGTCCCTGTAGCCTCTAACCGCCCCGGATCCGCCTGGCAATTTTGGACCACCCCGATATACAAGGAGCTGACGAGGACAACCGGGGAGAAATCGGACAGGAAGATGGACCAAGGAGGCAAAACCGGCAAGTGGGACGGGCCAAGACCGAAGGGGTCAGGTTTTTGGCCCGACCCCCTGCTCGCGCGGGCCGAGCCCGTTCGGTCTCGTCTGGTCTCCACCGCCTCTGGCTGCCCCGGTTTCGCCTGGTTTGACCTAAAACGCCTCCGAATACCTAAAAACCCTAGGAGGATGAGCAGGTATTTAGATCCCTCTTCGCCACTGAAGAGGGGATCCCGAATTCTATCCTTGAACTCTACTCTCTATTCTCTGCTTTCTCCTCTTGCTCTTACTTTTCCACGCCCTACCGTTCTGCTTGCTGACTTAAGCATCGGAGCCGGTGTGGCGAGCACCACACCGGTGTGCAGGTTTACTGTCTTGCAGGCCACGTCTTCCCCCCTCAACTACAAATTTACCGTTGGTGGCACGTGA

Protein sequence

MDLRGETDKWDGPRPKGSGFWPYPLLGLDHGPRPTLSPLVRAEPVGPRLVPVASNRPGSAWQFWTTPIYKELTRTTGEKSDRKMDQGGKTGKWDGPRPKGSGFWPDPLLARAEPVRSRLVSTASGCPGFAWFDLKRLRIPKNPRRMSRYLDPSSPLKRGSRILSLNSTLYSLLSPLALTFPRPTVLLADLSIGAGVASTTPVCRFTVLQATSSPLNYKFTVGGT
Homology
The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 75..92
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 75..98

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Lag0006397Lag0006397gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Lag0006397.1.exon2Lag0006397.1.exon2exon
Lag0006397.1.exon1Lag0006397.1.exon1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
cds.Lag0006397.1cds.Lag0006397.1_2CDS
cds.Lag0006397.1cds.Lag0006397.1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Lag0006397.1Lag0006397.1-proteinpolypeptide