Lag0005679.1 (mRNA) Sponge gourd (AG‐4) v1

Overview
NameLag0005679.1
TypemRNA
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionATP synthase subunit 9, mitochondrial
Locationchr6: 25844189 .. 25844497 (+)
Sequence length309
RNA-Seq ExpressionLag0005679.1
SyntenyLag0005679.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTAGAAGGTGCAAAATCAATGGGTGTCGGAGCTGCTACAATTGCTTCAGCGGGAGCTGCAGTCGGTATTGGAAACGTGTTCAGTTCTTTGATCCATTCCGTGGCCCGAAATCCATCATTGGCTAAACAATCATTTGGTTATGCCATTATGGGCTTTGCTCTAACCGAAGCTATTGCATTGTTTGCTCCAATGATGGCCTTTTTGATCTCATCCGTATTCCGATCGAAGAAAGAAGGTTTCAGTCTCATAAAGCAAGACCTCTTTCACATAAGAAAGTGGAGGCGGGCTTGGGTACGATCTAACTAA

mRNA sequence

ATGTTAGAAGGTGCAAAATCAATGGGTGTCGGAGCTGCTACAATTGCTTCAGCGGGAGCTGCAGTCGGTATTGGAAACGTGTTCAGTTCTTTGATCCATTCCGTGGCCCGAAATCCATCATTGGCTAAACAATCATTTGGTTATGCCATTATGGGCTTTGCTCTAACCGAAGCTATTGCATTGTTTGCTCCAATGATGGCCTTTTTGATCTCATCCGTATTCCGATCGAAGAAAGAAGGTTTCAGTCTCATAAAGCAAGACCTCTTTCACATAAGAAAGTGGAGGCGGGCTTGGGTACGATCTAACTAA

Coding sequence (CDS)

ATGTTAGAAGGTGCAAAATCAATGGGTGTCGGAGCTGCTACAATTGCTTCAGCGGGAGCTGCAGTCGGTATTGGAAACGTGTTCAGTTCTTTGATCCATTCCGTGGCCCGAAATCCATCATTGGCTAAACAATCATTTGGTTATGCCATTATGGGCTTTGCTCTAACCGAAGCTATTGCATTGTTTGCTCCAATGATGGCCTTTTTGATCTCATCCGTATTCCGATCGAAGAAAGAAGGTTTCAGTCTCATAAAGCAAGACCTCTTTCACATAAGAAAGTGGAGGCGGGCTTGGGTACGATCTAACTAA

Protein sequence

MLEGAKSMGVGAATIASAGAAVGIGNVFSSLIHSVARNPSLAKQSFGYAIMGFALTEAIALFAPMMAFLISSVFRSKKEGFSLIKQDLFHIRKWRRAWVRSN
Homology
[Close]
BLAST of Lag0005679.1 vs. NCBI nr
Match: YP_009913645.1 (ATPase subunit 9 [Luffa acutangula] >QLM02675.1 ATPase subunit 9 [Luffa acutangula])

HSP 1 Score: 189.1 bits (479), Expect = 1.9e-44
Identity = 100/102 (98.04%), Postives = 101/102 (99.02%), Query Frame = 0 

Query: 1   MLEGAKSMGVGAATIASAGAAVGIGNVFSSLIHSVARNPSLAKQSFGYAIMGFALTEAIA 60
           MLEGAKSMG GAATIASAGAAVGIGNVFSSLIHSVARNPSLAKQSFGYAI+GFALTEAIA
Sbjct: 1   MLEGAKSMGAGAATIASAGAAVGIGNVFSSLIHSVARNPSLAKQSFGYAILGFALTEAIA 60

Query: 61  LFAPMMAFLISSVFRSKKEGFSLIKQDLFHIRKWRRAWVRSN 103
           LFAPMMAFLISSVFRSKKEGFSLIKQDLFHIRKWRRAWVRSN
Sbjct: 61  LFAPMMAFLISSVFRSKKEGFSLIKQDLFHIRKWRRAWVRSN 102

[Close]
BLAST of Lag0005679.1 vs. NCBI nr
Match: QGW53583.1 (ATP synthase subunit 9 [Peganum harmala])

HSP 1 Score: 184.1 bits (466), Expect = 6.0e-43
Identity = 98/101 (97.03%), Postives = 99/101 (98.02%), Query Frame = 0 

Query: 1   MLEGAKSMGVGAATIASAGAAVGIGNVFSSLIHSVARNPSLAKQSFGYAIMGFALTEAIA 60
           MLEGAKSMG GAATIASAGAAVGIGNVFSSLIHSVARNPSLAKQSFGYAI+GFALTEAIA
Sbjct: 1   MLEGAKSMGAGAATIASAGAAVGIGNVFSSLIHSVARNPSLAKQSFGYAILGFALTEAIA 60

Query: 61  LFAPMMAFLISSVFRSKKEGFSLIKQDLFHIRKWRRAWVRS 102
            FAPMMAFLISSVFRSKKEGFSLIKQDLFHIRKWRRAWVRS
Sbjct: 61  SFAPMMAFLISSVFRSKKEGFSLIKQDLFHIRKWRRAWVRS 101

[Close]
BLAST of Lag0005679.1 vs. NCBI nr
Match: XP_038900508.1 (ATP synthase subunit 9, mitochondrial, partial [Benincasa hispida])

HSP 1 Score: 183.0 bits (463), Expect = 1.3e-42
Identity = 97/102 (95.10%), Postives = 99/102 (97.06%), Query Frame = 0 

Query: 1   MLEGAKSMGVGAATIASAGAAVGIGNVFSSLIHSVARNPSLAKQSFGYAIMGFALTEAIA 60
           ML+GAKSMG GAATIASAGAAVGIGNVFSSLIHSVARNPSLAKQSFGYAI+GFALTEAIA
Sbjct: 12  MLKGAKSMGAGAATIASAGAAVGIGNVFSSLIHSVARNPSLAKQSFGYAILGFALTEAIA 71

Query: 61  LFAPMMAFLISSVFRSKKEGFSLIKQDLFHIRKWRRAWVRSN 103
           LFAPMMAFLI  VFRSKKEGFSLIKQDLFHIRKWRRAWVRSN
Sbjct: 72  LFAPMMAFLILFVFRSKKEGFSLIKQDLFHIRKWRRAWVRSN 113

[Close]
BLAST of Lag0005679.1 vs. NCBI nr
Match: YP_009704554.1 (ATP synthase subunit 9 [Spondias mombin] >YP_009704622.1 ATP synthase subunit 9 [Spondias tuberosa] >QEP09120.1 ATP synthase subunit 9 [Spondias mombin] >QEP09152.1 ATP synthase subunit 9 [Spondias tuberosa])

HSP 1 Score: 165.6 bits (418), Expect = 2.2e-37
Identity = 90/93 (96.77%), Postives = 91/93 (97.85%), Query Frame = 0 

Query: 1   MLEGAKSMGVGAATIASAGAAVGIGNVFSSLIHSVARNPSLAKQSFGYAIMGFALTEAIA 60
           MLEGAKSMG GAATIASAGAAVGIGNVFSSLIHSVARNPSLAKQSFGYAI+GFALTEAIA
Sbjct: 12  MLEGAKSMGAGAATIASAGAAVGIGNVFSSLIHSVARNPSLAKQSFGYAILGFALTEAIA 71

Query: 61  LFAPMMAFLISSVFRSKKEGFSLIKQDLFHIRK 94
            FAPMMAFLISSVFRSKKEGFSLIKQDLFHIRK
Sbjct: 72  SFAPMMAFLISSVFRSKKEGFSLIKQDLFHIRK 104

[Close]
BLAST of Lag0005679.1 vs. NCBI nr
Match: XP_022930591.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111436993 [Cucurbita moschata])

HSP 1 Score: 154.8 bits (390), Expect = 3.9e-34
Identity = 87/97 (89.69%), Postives = 89/97 (91.75%), Query Frame = 0 

Query: 1  MLEGAKSMGVGAATIASAGAAVGIGNVFSSLIHSVARNPSLAKQSFGYAIMGFALTEAIA 60
          MLEGAKSMG GAATIAS GAAVGIGNVFSSLIHSVARNPSLAKQSFGYAI+GFALTEAIA
Sbjct: 1  MLEGAKSMGAGAATIASPGAAVGIGNVFSSLIHSVARNPSLAKQSFGYAILGFALTEAIA 60

Query: 61 LFAPMMAFLISSVFRSKKEGFSLIKQDLFHIRKWRRA 98
          LFAPMMAFLIS VFRSKK G  LIKQDLFHI+KW  A
Sbjct: 61 LFAPMMAFLISFVFRSKK-GSXLIKQDLFHIKKWVEA 96

[Close]
BLAST of Lag0005679.1 vs. ExPASy Swiss-Prot
Match: Q37550 (ATP synthase subunit 9, mitochondrial OS=Malus domestica OX=3750 GN=ATP9 PE=3 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 1.8e-29
Identity = 71/76 (93.42%), Postives = 74/76 (97.37%), Query Frame = 0 

Query: 1  MLEGAKSMGVGAATIASAGAAVGIGNVFSSLIHSVARNPSLAKQSFGYAIMGFALTEAIA 60
          MLEGAKS+G GAATIASAGAA+GIGNVFSSLIHSVARNPSLAKQSFGYAI+GFALTEAIA
Sbjct: 1  MLEGAKSIGAGAATIASAGAAIGIGNVFSSLIHSVARNPSLAKQSFGYAILGFALTEAIA 60

Query: 61 LFAPMMAFLISSVFRS 77
           FAPMMAFLISSVFRS
Sbjct: 61 SFAPMMAFLISSVFRS 76

[Close]
BLAST of Lag0005679.1 vs. ExPASy Swiss-Prot
Match: P60113 (ATP synthase subunit 9, mitochondrial OS=Brassica napus OX=3708 GN=ATP9 PE=2 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 9.6e-28
Identity = 68/74 (91.89%), Postives = 71/74 (95.95%), Query Frame = 0 

Query: 1  MLEGAKSMGVGAATIASAGAAVGIGNVFSSLIHSVARNPSLAKQSFGYAIMGFALTEAIA 60
          MLEGAKS+G GAATIASAGAA+GIGNVFSSLIHSVARNPSLAKQSFGYAI+GFALTEAIA
Sbjct: 1  MLEGAKSIGAGAATIASAGAAIGIGNVFSSLIHSVARNPSLAKQSFGYAILGFALTEAIA 60

Query: 61 LFAPMMAFLISSVF 75
          LFAPMMAFLI  VF
Sbjct: 61 LFAPMMAFLILFVF 74

[Close]
BLAST of Lag0005679.1 vs. ExPASy Swiss-Prot
Match: P17254 (ATP synthase subunit 9, mitochondrial OS=Helianthus annuus OX=4232 GN=ATP9 PE=3 SV=2)

HSP 1 Score: 124.0 bits (310), Expect = 9.6e-28
Identity = 71/83 (85.54%), Postives = 74/83 (89.16%), Query Frame = 0 

Query: 1  MLEGAKSMGVGAATIASAGAAVGIGNVFSSLIHSVARNPSLAKQSFGYAIMGFALTEAIA 60
          MLEGAKS+G GAATIASAGAA+GIGNV SS IHSVARNPSLAKQSFGYAI+GFALTEAIA
Sbjct: 1  MLEGAKSIGAGAATIASAGAAIGIGNVLSSSIHSVARNPSLAKQSFGYAILGFALTEAIA 60

Query: 61 LFAPMMAFLISSVF---RSKKEG 81
           FAPMMAFLISSV     SKKEG
Sbjct: 61 SFAPMMAFLISSVIPIKESKKEG 83

[Close]
BLAST of Lag0005679.1 vs. ExPASy Swiss-Prot
Match: P69420 (ATP synthase subunit 9, mitochondrial OS=Pisum sativum OX=3888 GN=ATP9 PE=3 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 5.3e-26
Identity = 67/74 (90.54%), Postives = 69/74 (93.24%), Query Frame = 0 

Query: 1  MLEGAKSMGVGAATIASAGAAVGIGNVFSSLIHSVARNPSLAKQSFGYAIMGFALTEAIA 60
          MLEGAKS+G GAATIASAGAAVGIGNVFSSLIHSVARNPSLAKQ FGYAI+GFALTEAIA
Sbjct: 1  MLEGAKSIGAGAATIASAGAAVGIGNVFSSLIHSVARNPSLAKQLFGYAILGFALTEAIA 60

Query: 61 LFAPMMAFLISSVF 75
          LFA MMAFLI  VF
Sbjct: 61 LFALMMAFLILFVF 74

[Close]
BLAST of Lag0005679.1 vs. ExPASy Swiss-Prot
Match: P69421 (ATP synthase subunit 9, mitochondrial OS=Glycine max OX=3847 GN=ATP9 PE=3 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 5.3e-26
Identity = 67/74 (90.54%), Postives = 69/74 (93.24%), Query Frame = 0 

Query: 1  MLEGAKSMGVGAATIASAGAAVGIGNVFSSLIHSVARNPSLAKQSFGYAIMGFALTEAIA 60
          MLEGAKS+G GAATIASAGAAVGIGNVFSSLIHSVARNPSLAKQ FGYAI+GFALTEAIA
Sbjct: 1  MLEGAKSIGAGAATIASAGAAVGIGNVFSSLIHSVARNPSLAKQLFGYAILGFALTEAIA 60

Query: 61 LFAPMMAFLISSVF 75
          LFA MMAFLI  VF
Sbjct: 61 LFALMMAFLILFVF 74

The following BLAST results are available for this feature:
BLAST of Lag0005679.1 vs. NCBI nr
Match NameE-valueIdentityDescription
YP_009913645.11.9e-4498.04ATPase subunit 9 [Luffa acutangula] >QLM02675.1 ATPase subunit 9 [Luffa acutangu... [more]
QGW53583.16.0e-4397.03ATP synthase subunit 9 [Peganum harmala][more]
XP_038900508.11.3e-4295.10ATP synthase subunit 9, mitochondrial, partial [Benincasa hispida][more]
YP_009704554.12.2e-3796.77ATP synthase subunit 9 [Spondias mombin] >YP_009704622.1 ATP synthase subunit 9 ... [more]
XP_022930591.13.9e-3489.69LOW QUALITY PROTEIN: uncharacterized protein LOC111436993 [Cucurbita moschata][more]
BLAST of Lag0005679.1 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q375501.8e-2993.42ATP synthase subunit 9, mitochondrial OS=Malus domestica OX=3750 GN=ATP9 PE=3 SV... [more]
P601139.6e-2891.89ATP synthase subunit 9, mitochondrial OS=Brassica napus OX=3708 GN=ATP9 PE=2 SV=... [more]
P172549.6e-2885.54ATP synthase subunit 9, mitochondrial OS=Helianthus annuus OX=4232 GN=ATP9 PE=3 ... [more]
P694205.3e-2690.54ATP synthase subunit 9, mitochondrial OS=Pisum sativum OX=3888 GN=ATP9 PE=3 SV=1[more]
P694215.3e-2690.54ATP synthase subunit 9, mitochondrial OS=Glycine max OX=3847 GN=ATP9 PE=3 SV=1[more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000454ATP synthase, F0 complex, subunit CPRINTSPR00124ATPASECcoord: 29..44
score: 50.37
coord: 46..71
score: 51.55
coord: 8..27
score: 49.26
IPR000454ATP synthase, F0 complex, subunit CPANTHERPTHR10031ATP SYNTHASE LIPID-BINDING PROTEIN, MITOCHONDRIALcoord: 1..78
IPR000454ATP synthase, F0 complex, subunit CHAMAPMF_01396ATP_synth_c_bactcoord: 3..71
score: 13.938501
IPR038662F1F0 ATP synthase subunit C superfamilyGENE3D1.20.20.10F1F0 ATP synthase subunit Ccoord: 3..71
e-value: 1.1E-25
score: 91.6
IPR002379V-ATPase proteolipid subunit C-like domainPFAMPF00137ATP-synt_Ccoord: 8..70
e-value: 2.4E-10
score: 40.6
NoneNo IPR availablePANTHERPTHR10031:SF38ATP SYNTHASE SUBUNIT 9, MITOCHONDRIALcoord: 1..78
NoneNo IPR availableCDDcd18182ATP-synt_Fo_c_ATP5G3coord: 6..70
e-value: 1.06497E-20
score: 76.3943
IPR020537ATP synthase, F0 complex, subunit C, DCCD-binding sitePROSITEPS00605ATPASE_Ccoord: 36..57
IPR035921F/V-ATP synthase subunit C superfamilySUPERFAMILY81333F1F0 ATP synthase subunit Ccoord: 3..71

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Lag0005679Lag0005679gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Lag0005679.1.exon1Lag0005679.1.exon1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
cds.Lag0005679.1cds.Lag0005679.1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Lag0005679.1Lag0005679.1-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015986 ATP synthesis coupled proton transport
biological_process GO:1902600 proton transmembrane transport
cellular_component GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o)
cellular_component GO:0033177 proton-transporting two-sector ATPase complex, proton-transporting domain
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)
molecular_function GO:0015078 proton transmembrane transporter activity
molecular_function GO:0008289 lipid binding