Lag0003226.1 (mRNA) Sponge gourd (AG‐4) v1

Overview


Name	Lag0003226.1
Type	mRNA
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Unknown protein
Location	chr4: 49225886 .. 49226950 (+)
Sequence length	366
RNA-Seq Expression	Lag0003226.1
Synteny	Lag0003226.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGAAAAAAATTGAGAGGTACTAGTCATATGGTCAGAAGCTCCGGAATCAATAATCCACGGAGAAGAAGTGCCACAATAGAAGGCTTGAGGATAATTACATGTTTGTGCCAATGAAACACAAGAATTATTAGACGAGAAATTGGTTGGTAGCAATTTTAGGATTTGATGAACTTGCTCCATATCAATAATCAATAAATGAGTAAATGGGAAATAATAAAATATAAACCAAACCACAACGAACACTGAACCAGTAGTGAACCAGATCTCTAAATCCTCGAAAAAACGCGGTGAAAAATAAATCCCCCGAGCAAAGACGGCGGCGTGAGCTGCTGCCTGCTGTTGAAAAACGGGAGTAAAAAATCAGCCCAACTTTGTTCTTGGGTAGCGGTGGAAAGCTGGCTAGGATTCGGTCTGGTTTTTTTCGCAAGGTTTAGATAAAAAATCACCCAAAAAAGCAGGCGGCGTGAGCTGATACCAGAAACCCACGAAGCAAAAAACCGACTGGCAAACTTGGAGCAAACTTGCAAACCCACGAAGCAAACTTGAAAAAAAAAACGAGAACGGCAAAAAACGACGAAGCAAACCCACGAAGCACGAAGCAAACTTGCAGTGTAGGTAAAAAACCGAGAACGGCGGTGGGTTTTGCAGGAAACCCACGAAGCAAACTTGCAGTTCGTTGTGCGGCGAATTCAGTGGGTTGGTGAACAGAGAACGACGACGAATCTTGACAGACGACGACGACTTGCAAAGGTAACTTGAGCGTTCAGATCACAGGGTAGGCTTGCTAGTCGAATAGTTGCGGGTTGCGTGGTCTCAGGTCGATTTCGTCACAAACGGCAGAGAGCTCGTGGTCGCGGATCAATGTGGAGCTTGGTCACACGAACGGCGGTGATGGACGTAGGCGGCGGCGGAAGACGGCTAGGGTTAGGTGTGGCAACGAATGTGTATGGGTCAAGGCAAGAAACAAAGCCATCGACGCCGGAAGTAGGATGCACCAATCAAGAATGGTGGCTAGGGTTCCGACGGCAGCGGTGGCTAGGGTTTCAAAGTATGGTGGCTAG

mRNA sequence

ATGAAGAAAAAAATTGAGAGGAAACCCACGAAGCAAACTTGCAGTTCGTTGTGCGGCGAATTCAGTGGGTTGGTGAACAGAGAACGACGACGAATCTTGACAGACGACGACGACTTGCAAAGGTCGATTTCGTCACAAACGGCAGAGAGCTCGTGGTCGCGGATCAATGTGGAGCTTGGTCACACGAACGGCGGTGATGGACGTAGGCGGCGGCGGAAGACGGCTAGGGTTAGGTGTGGCAACGAATGTGTATGGGTCAAGGCAAGAAACAAAGCCATCGACGCCGGAAGTAGGATGCACCAATCAAGAATGGTGGCTAGGGTTCCGACGGCAGCGGTGGCTAGGGTTTCAAAGTATGGTGGCTAG

Coding sequence (CDS)

ATGAAGAAAAAAATTGAGAGGAAACCCACGAAGCAAACTTGCAGTTCGTTGTGCGGCGAATTCAGTGGGTTGGTGAACAGAGAACGACGACGAATCTTGACAGACGACGACGACTTGCAAAGGTCGATTTCGTCACAAACGGCAGAGAGCTCGTGGTCGCGGATCAATGTGGAGCTTGGTCACACGAACGGCGGTGATGGACGTAGGCGGCGGCGGAAGACGGCTAGGGTTAGGTGTGGCAACGAATGTGTATGGGTCAAGGCAAGAAACAAAGCCATCGACGCCGGAAGTAGGATGCACCAATCAAGAATGGTGGCTAGGGTTCCGACGGCAGCGGTGGCTAGGGTTTCAAAGTATGGTGGCTAG

Protein sequence

MKKKIERKPTKQTCSSLCGEFSGLVNRERRRILTDDDDLQRSISSQTAESSWSRINVELGHTNGGDGRRRRRKTARVRCGNECVWVKARNKAIDAGSRMHQSRMVARVPTAAVARVSKYGG

Homology

The following BLAST results are available for this feature:

BLAST of Lag0003226.1 vs.


Match Name	E-value	Identity	Description

BLAST of Lag0003226.1 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 43..58
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 43..73

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lag0003226	Lag0003226	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lag0003226.1.exon1	Lag0003226.1.exon1	exon
Lag0003226.1.exon2	Lag0003226.1.exon2	exon
Lag0003226.1.exon3	Lag0003226.1.exon3	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.Lag0003226.1	cds.Lag0003226.1	CDS
cds.Lag0003226.1	cds.Lag0003226.1_2	CDS
cds.Lag0003226.1	cds.Lag0003226.1_3	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lag0003226.1	Lag0003226.1-protein	polypeptide