Lag0002480.1 (mRNA) Sponge gourd (AG‐4) v1

Overview
NameLag0002480.1
TypemRNA
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionRNase H domain-containing protein
Locationchr4: 43237646 .. 43238062 (-)
Sequence length417
RNA-Seq ExpressionLag0002480.1
SyntenyLag0002480.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTTACCTTTATGAAATTGATCCATCATGTGCAAGATGTGGATGCTCTAGAGGCTATGGCAATCCGTGATAGCTTGTTTGTTGCTAAGGAAGCTGGTCTGCTGAGGTTGGAGGTGGAAACGGACTCTGCTCGTGTGACGGTCATGGTTCGGTCAAAGCAGAACAATTGTTCTGAGGTAGGAGTCCTGGTGCAAGAGATCAACCAGATCTCGAGGGGGATGCATTTCTGCTCTGTGTGTTGGTGCCGGAGGGAGGTGAATCGGGTGGCACAAATGGCGGCGAGGCAAGTGATGGAGCTGGACATTCAGGGTGTGTGGCTGGAGGAGACGCCGGCGTCTTTGGAGGAGGTGTATCGCAGCGAAATTTTGGACAGTTTTAGTGAAAGCCCGAGGGTTTTGTCCGAGGGCTCCTTTTAG

mRNA sequence

ATGCTTACCTTTATGAAATTGATCCATCATGTGCAAGATGTGGATGCTCTAGAGGCTATGGCAATCCGTGATAGCTTGTTTGTTGCTAAGGAAGCTGGTCTGCTGAGGTTGGAGGTGGAAACGGACTCTGCTCGTGTGACGGTCATGGTTCGGTCAAAGCAGAACAATTGTTCTGAGGTAGGAGTCCTGGTGCAAGAGATCAACCAGATCTCGAGGGGGATGCATTTCTGCTCTGTGTGTTGGTGCCGGAGGGAGGTGAATCGGGTGGCACAAATGGCGGCGAGGCAAGTGATGGAGCTGGACATTCAGGGTGTGTGGCTGGAGGAGACGCCGGCGTCTTTGGAGGAGGTGTATCGCAGCGAAATTTTGGACAGTTTTAGTGAAAGCCCGAGGGTTTTGTCCGAGGGCTCCTTTTAG

Coding sequence (CDS)

ATGCTTACCTTTATGAAATTGATCCATCATGTGCAAGATGTGGATGCTCTAGAGGCTATGGCAATCCGTGATAGCTTGTTTGTTGCTAAGGAAGCTGGTCTGCTGAGGTTGGAGGTGGAAACGGACTCTGCTCGTGTGACGGTCATGGTTCGGTCAAAGCAGAACAATTGTTCTGAGGTAGGAGTCCTGGTGCAAGAGATCAACCAGATCTCGAGGGGGATGCATTTCTGCTCTGTGTGTTGGTGCCGGAGGGAGGTGAATCGGGTGGCACAAATGGCGGCGAGGCAAGTGATGGAGCTGGACATTCAGGGTGTGTGGCTGGAGGAGACGCCGGCGTCTTTGGAGGAGGTGTATCGCAGCGAAATTTTGGACAGTTTTAGTGAAAGCCCGAGGGTTTTGTCCGAGGGCTCCTTTTAG

Protein sequence

MLTFMKLIHHVQDVDALEAMAIRDSLFVAKEAGLLRLEVETDSARVTVMVRSKQNNCSEVGVLVQEINQISRGMHFCSVCWCRREVNRVAQMAARQVMELDIQGVWLEETPASLEEVYRSEILDSFSESPRVLSEGSF
Homology
BLAST of Lag0002480.1 vs. NCBI nr
Match: KAF7819670.1 (uncharacterized protein G2W53_025125 [Senna tora])

HSP 1 Score: 68.2 bits (165), Expect = 6.5e-08
Identity = 38/112 (33.93%), Postives = 64/112 (57.14%), Query Frame = 0

Query: 14  VDALEAMAIRDSLFVAKEAGLLRLEVETDSARVTVMVRSKQNNCSEVGVLVQEINQISRG 73
           VD LEA+A+ + L +AK   +L +EVE DSA+V  ++  K  + S +G+++++I ++S  
Sbjct: 134 VDTLEALAVYEGLMLAKSMSILNIEVEGDSAKVFKLLNKKGTDQSYLGIIIEDILELSSF 193

Query: 74  MHFCSVCWCRREVNRVAQMAARQVMELDIQG----VWLEETPASLEEVYRSE 122
            +F S  W RRE N++A + A   +E         VWLE+ P  +    R +
Sbjct: 194 FNFVSFKWIRRETNKLAHILAHDHVEFMDDNLSTIVWLEDYPLLICNALRQD 245

BLAST of Lag0002480.1 vs. NCBI nr
Match: XP_021739472.1 (uncharacterized protein LOC110705848 [Chenopodium quinoa])

HSP 1 Score: 68.2 bits (165), Expect = 6.5e-08
Identity = 35/110 (31.82%), Postives = 66/110 (60.00%), Query Frame = 0

Query: 13  DVDALEAMAIRDSLFVAKEAGLLRLEVETDSARVTVMVRSKQNNCSEVGVLVQEINQISR 72
           DVD +EAMA+R +L +A E+G LR+ +ETD+ ++   +  ++ + +  G++ ++I +++ 
Sbjct: 154 DVDVVEAMAMRHALVIAMESGFLRVCLETDNIKLHYGLSKQKEDLTAFGLITKDILKLAN 213

Query: 73  GMHFCSVCWCRREVNRVAQMAARQVMELDIQGVWLEETPASLEEVYRSEI 123
             H CS  + +R  N+VA   A+   +     VWLEE P  + EV  +++
Sbjct: 214 SCHECSFAFVKRTGNQVAHSLAKLSSKFVSLRVWLEEYPIEIHEVVMADL 263

BLAST of Lag0002480.1 vs. NCBI nr
Match: KAF7835887.1 (uncharacterized protein G2W53_010746 [Senna tora])

HSP 1 Score: 65.5 bits (158), Expect = 4.2e-07
Identity = 42/117 (35.90%), Postives = 64/117 (54.70%), Query Frame = 0

Query: 11  VQDVDALEAMAIRDSLFVAKEAGLLRLEVETDSARVTVMVRSKQNNCSEVGVLVQEINQI 70
           +  VD +EA+A+ D L +AK   +L +EVE DSA V  ++     + S +G+++++I  +
Sbjct: 80  ITSVDTMEAVAVYDGLVLAKSMSILNIEVEGDSANVFKLLNRGGVDQSYLGIIIEDILDL 139

Query: 71  SRGMHFCSVCWCRREVNRVAQ-MAARQVMELDIQG---VWLEETPASLEEVYRSEIL 124
           S      S  W RRE NRVA  +A  QV  LD      VWLE+ P  +    R ++L
Sbjct: 140 SNFFSSISFKWIRRETNRVAHILAHEQVDFLDDNSSSLVWLEDYPPLICNALRQDLL 196

BLAST of Lag0002480.1 vs. NCBI nr
Match: XP_021763700.1 (uncharacterized protein LOC110728362 [Chenopodium quinoa])

HSP 1 Score: 65.5 bits (158), Expect = 4.2e-07
Identity = 38/110 (34.55%), Postives = 63/110 (57.27%), Query Frame = 0

Query: 13  DVDALEAMAIRDSLFVAKEAGLLRLEVETDSARVTVMVRSKQNNCSEVGVLVQEINQISR 72
           DVD  EA+A+R +L +  EAG LRL +ET+  ++   ++      +  G +V +I  +SR
Sbjct: 214 DVDIAEALAMRHALSITMEAGFLRLCLETNCLKLHSHLKKGYVTPTPFGRIVSDILTLSR 273

Query: 73  GMHFCSVCWCRREVNRVAQMAARQVMELDIQGVWLEETPASLEEVYRSEI 123
             HFCS  + +R+ NRVA   A+   +     VWLEE P+ + E+  +++
Sbjct: 274 LCHFCSSSFVKRDGNRVAHGLAKACNQFSNLRVWLEECPSDVMELVLADL 323

BLAST of Lag0002480.1 vs. NCBI nr
Match: XP_021748542.1 (uncharacterized protein LOC110714345 [Chenopodium quinoa])

HSP 1 Score: 63.5 bits (153), Expect = 1.6e-06
Identity = 37/108 (34.26%), Postives = 58/108 (53.70%), Query Frame = 0

Query: 15  DALEAMAIRDSLFVAKEAGLLRLEVETDSARVTVMVRSKQNNCSEVGVLVQEINQISRGM 74
           D  EA+A+R +L +A E+G  R+ VETD  ++   V       +E G +V +I  I++G 
Sbjct: 47  DIAEALAMRHALCIAIESGFRRVCVETDCLKLHSYVSKGNAPPTEFGSIVHDILHIAKGC 106

Query: 75  HFCSVCWCRREVNRVAQMAARQVMELDIQGVWLEETPASLEEVYRSEI 123
             CS  + +R  NRVA   A+  +  D   VWLEE P  + E   +++
Sbjct: 107 QSCSFTFVKRSGNRVAHELAKLALSFDSLRVWLEEVPGCIAEFVLADL 154

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAF7819670.16.5e-0833.93uncharacterized protein G2W53_025125 [Senna tora][more]
XP_021739472.16.5e-0831.82uncharacterized protein LOC110705848 [Chenopodium quinoa][more]
KAF7835887.14.2e-0735.90uncharacterized protein G2W53_010746 [Senna tora][more]
XP_021763700.14.2e-0734.55uncharacterized protein LOC110728362 [Chenopodium quinoa][more]
XP_021748542.11.6e-0634.26uncharacterized protein LOC110714345 [Chenopodium quinoa][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002156Ribonuclease H domainPFAMPF13456RVT_3coord: 8..96
e-value: 4.0E-13
score: 49.3
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 2..103
e-value: 4.6E-7
score: 31.8

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Lag0002480Lag0002480gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Lag0002480.1.exon1Lag0002480.1.exon1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
cds.Lag0002480.1cds.Lag0002480.1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Lag0002480.1Lag0002480.1-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity