Lag0002035.1 (mRNA) Sponge gourd (AG‐4) v1

Overview
NameLag0002035.1
TypemRNA
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionUnknown protein
Locationchr4: 38563058 .. 38564779 (-)
Sequence length429
RNA-Seq ExpressionLag0002035.1
SyntenyLag0002035.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCTCACTGTTCTCTATCTCCATCTTGGTGTGTTATGTGTGCTAATGAAGATGAGAATCCAGGCCATTTATTTGGGTGTTTCTCCTTTGCTCGTTGTTACTGGTCTTACATCTTGGAAGCATTTGGGTGGAATTTGGCCCTACCTAATAATGCGTTTGATCTTGATTTGGCCCTACCTAATAATGTGTTTGATCTTGTCTCTTTGATTTTTACTGGTCATCCGTTCCATGGTTCAAAGAAGACATTATGGTTGGCTTTTAATAGGGTGTTCTTTTGGTCGCTTTGGGGTGAAAGAAATAGTAGGATCTTCAGAGATAAGGCTTCCAACTTCACTACTTTTATAGATTTGGTTGTTTTTAATTCTCTTTATTGGTGTAAATGTAAACCCCCGTTCTCTGATTATAGCCTTTCGTCTTTAATTGCAAATTGGAAATCTTTTATGTAATTCACCTTTTGGTGTTTGGAGTATTATCTCCTATTTCATTCATTCAATGAAATTGTTTCCCTTCTCAAAAAAAAATGTAACTTCTTGAAATGTAACCATATTGATGACTCAAATCGGTTCTCAGAATTCAGAATGGGGTCATAAATTTTGCAGAATGGTTTCTGTTCATAATTCAGGAGAGGGAAATTCCTTCTCACCCTCTTAGTTACAAGGAGCTGGAATAAATTTGATTATATGTTTTCAGTTCTGAGGTGTAGTCAGTTTGAGATAGCCAGATGCATGGTATTCATAGGATAATGGGAAGAATCTTGATGTTGCTAGCTATGTAAGCATCAAATTTTTTTTTTTTTTTTGATATCCGTGAGTGTCCGGGCCAGCTTATGCGCACCTCGACTAATCTAATGGGACAACCGCCTGACCCTACTACATTTGTTTGCCAAGGAAACTCGTAGGATATTAAATATCCTAGGTAGGTGGCCACCATGGATTGAACCCATTCCCTCTAAGCCCTTTATTTTTTCTATGGTCCTTGTTGACCATTAGGGCCAACCCATGATGGTTTATGTAAGCATCAACATTGAAGATTAATCTCATCGTTTATAGGTCTTGTGAGCTCATTCTCCCTTACAACAACAATTCTCAGATAGTTTCATAGTGTGCATAGGTCTTGTGAGCTCACTTTTGGTGCAGAAGTTAGTTGTGAATGTCTGAATGCTCACGATGAGTATGGGTTTTTGTTCATTCTAGAATTTTTCTATAAACCAAAGTAGGATTAGATCATATTCTGCTCATGAACATTCATCTCTATTGTCTTTTGATATTGAATTTTTGTACCTACTCCGTTTCATCCCTAAACTTTCAAGTTCGTTATTTTAACTCTCAACTTTCAAATATTTTGTTTTACTCACTATACGTTTGCATACAAAGCGATTTTAGTTTTCACCCTTAGTTTTTAATCCATAAATTTTGCATAAAACATTATCTTAGTCCTTGAAACTAATCATTATATTAAATTATTTAACAAAGCTCTGACATAAACACATCTTTTGTTGTTTATTTGCCTTAATCATTAGACCACAAACATTCTTATCTTGTTAAAATTATCCAGAGTATGATTACAGTTAGGTATCTATTGATCTTATTGTCTTCCTATATTCATGTGCAAATGTTAAGAGATTCTAATAATGTGGGAATCAATTGCAGACATCAAGACCAGAGTACAATCAGATCCTTGTAAAGAAGCCTGAGGGTTTTGATATGTGGCCATTCCAGTAA

mRNA sequence

ATGCCTCACTGTTCTCTATCTCCATCTTGGTGTGTTATGTGTGCTAATGAAGATGAGAATCCAGGCCATTTATTTGGGTGTTTCTCCTTTGCTCGTTGTTACTGGTCTTACATCTTGGAAGCATTTGGGTGGAATTTGGCCCTACCTAATAATGCGTTTGATCTTGATTTGGCCCTACCTAATAATGTGTTTGATCTTGTCTCTTTGATTTTTACTGGTCATCCGTTCCATGGTTCAAAGAAGACATTATGGAGAGGGAAATTCCTTCTCACCCTCTTAGTTACAAGGAGCTGGAATAAATTTGATTATATGTTTTCAGTTCTGAGGTGTAGTCAGTTTGAGATAGCCAGATGCATGACATCAAGACCAGAGTACAATCAGATCCTTGTAAAGAAGCCTGAGGGTTTTGATATGTGGCCATTCCAGTAA

Coding sequence (CDS)

ATGCCTCACTGTTCTCTATCTCCATCTTGGTGTGTTATGTGTGCTAATGAAGATGAGAATCCAGGCCATTTATTTGGGTGTTTCTCCTTTGCTCGTTGTTACTGGTCTTACATCTTGGAAGCATTTGGGTGGAATTTGGCCCTACCTAATAATGCGTTTGATCTTGATTTGGCCCTACCTAATAATGTGTTTGATCTTGTCTCTTTGATTTTTACTGGTCATCCGTTCCATGGTTCAAAGAAGACATTATGGAGAGGGAAATTCCTTCTCACCCTCTTAGTTACAAGGAGCTGGAATAAATTTGATTATATGTTTTCAGTTCTGAGGTGTAGTCAGTTTGAGATAGCCAGATGCATGACATCAAGACCAGAGTACAATCAGATCCTTGTAAAGAAGCCTGAGGGTTTTGATATGTGGCCATTCCAGTAA

Protein sequence

MPHCSLSPSWCVMCANEDENPGHLFGCFSFARCYWSYILEAFGWNLALPNNAFDLDLALPNNVFDLVSLIFTGHPFHGSKKTLWRGKFLLTLLVTRSWNKFDYMFSVLRCSQFEIARCMTSRPEYNQILVKKPEGFDMWPFQ
Homology
[Close]
BLAST of Lag0002035.1 vs. NCBI nr
Match: XP_022993749.1 (uncharacterized protein LOC111489659 [Cucurbita maxima])

HSP 1 Score: 64.3 bits (155), Expect = 9.6e-07
Identity = 30/57 (52.63%), Postives = 38/57 (66.67%), Query Frame = 0 

Query: 86  GKFLLTLLVTRSWNKFDYMFSVLRCSQFEIARCMTSRPEYNQILVKKPEGFDMWPFQ 143
           G FL T+       +F+ +F +     F + + +TSRPEYNQILVKKPEGFDMWPFQ
Sbjct: 17  GGFLKTVFRFLKMAEFEILFVLFFIVAFIVFKDLTSRPEYNQILVKKPEGFDMWPFQ 73

[Close]
BLAST of Lag0002035.1 vs. NCBI nr
Match: KAG6579058.1 (hypothetical protein SDJN03_23506, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 62.8 bits (151), Expect = 2.8e-06
Identity = 29/57 (50.88%), Postives = 37/57 (64.91%), Query Frame = 0 

Query: 86  GKFLLTLLVTRSWNKFDYMFSVLRCSQFEIARCMTSRPEYNQILVKKPEGFDMWPFQ 143
           G FL  +       +F+ +F +     F + + +TSRPEYNQILVKKPEGFDMWPFQ
Sbjct: 45  GGFLKAVFRLLKMAEFEILFVLFFIVAFIVFKDLTSRPEYNQILVKKPEGFDMWPFQ 101

[Close]
BLAST of Lag0002035.1 vs. NCBI nr
Match: XP_022938472.1 (uncharacterized protein LOC111444698 [Cucurbita moschata] >KAG7016589.1 hypothetical protein SDJN02_21699 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 62.4 bits (150), Expect = 3.7e-06
Identity = 29/57 (50.88%), Postives = 37/57 (64.91%), Query Frame = 0 

Query: 86  GKFLLTLLVTRSWNKFDYMFSVLRCSQFEIARCMTSRPEYNQILVKKPEGFDMWPFQ 143
           G FL  +       +F+ +F +     F + + +TSRPEYNQILVKKPEGFDMWPFQ
Sbjct: 17  GGFLKAVFRLLKMVEFEILFVLFFIVAFIVFKDLTSRPEYNQILVKKPEGFDMWPFQ 73

[Close]
BLAST of Lag0002035.1 vs. NCBI nr
Match: XP_023549700.1 (uncharacterized protein LOC111808120 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 62.4 bits (150), Expect = 3.7e-06
Identity = 29/57 (50.88%), Postives = 37/57 (64.91%), Query Frame = 0 

Query: 86  GKFLLTLLVTRSWNKFDYMFSVLRCSQFEIARCMTSRPEYNQILVKKPEGFDMWPFQ 143
           G FL  +       +F+ +F +     F + + +TSRPEYNQILVKKPEGFDMWPFQ
Sbjct: 17  GGFLKAVFRFLKMAEFEILFVLFFIVAFIVFKDLTSRPEYNQILVKKPEGFDMWPFQ 73

[Close]
BLAST of Lag0002035.1 vs. NCBI nr
Match: XP_022141376.1 (uncharacterized protein LOC111011789 [Momordica charantia])

HSP 1 Score: 61.6 bits (148), Expect = 6.2e-06
Identity = 29/55 (52.73%), Postives = 37/55 (67.27%), Query Frame = 0 

Query: 88  FLLTLLVTRSWNKFDYMFSVLRCSQFEIARCMTSRPEYNQILVKKPEGFDMWPFQ 143
           FL  +L      +F+ +F +     F + + +TSRPEYNQILVKKPEGFDMWPFQ
Sbjct: 19  FLKAVLRFLKMAEFEILFILFFVVAFILFKDLTSRPEYNQILVKKPEGFDMWPFQ 73

The following BLAST results are available for this feature:
BLAST of Lag0002035.1 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022993749.19.6e-0752.63uncharacterized protein LOC111489659 [Cucurbita maxima][more]
KAG6579058.12.8e-0650.88hypothetical protein SDJN03_23506, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022938472.13.7e-0650.88uncharacterized protein LOC111444698 [Cucurbita moschata] >KAG7016589.1 hypothet... [more]
XP_023549700.13.7e-0650.88uncharacterized protein LOC111808120 [Cucurbita pepo subsp. pepo][more]
XP_022141376.16.2e-0652.73uncharacterized protein LOC111011789 [Momordica charantia][more]
BLAST of Lag0002035.1 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Lag0002035Lag0002035gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Lag0002035.1.exon3Lag0002035.1.exon3exon
Lag0002035.1.exon2Lag0002035.1.exon2exon
Lag0002035.1.exon1Lag0002035.1.exon1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
cds.Lag0002035.1cds.Lag0002035.1_3CDS
cds.Lag0002035.1cds.Lag0002035.1_2CDS
cds.Lag0002035.1cds.Lag0002035.1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Lag0002035.1Lag0002035.1-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006979 response to oxidative stress
cellular_component GO:0016020 membrane