Lag0001687.1 (mRNA) Sponge gourd (AG‐4) v1

Overview


Name	Lag0001687.1
Type	mRNA
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Ribonuclease H
Location	chr4: 34284652 .. 34285675 (-)
Sequence length	849
RNA-Seq Expression	Lag0001687.1
Synteny	Lag0001687.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGAACTAATCGACCAAGTCGACCCACCCTTCACAGAAAAAGTCATGAAAGCTGAGGTGCCCCAGAAGTTCAAGGTACCTACATTCAAGCCGTATGATGACAAAAAGACCCTGTCCAGCATCTAAATGCCTACAAAAGCTGGATGGACTTCCACGGCGTCTCAGATGCAATCAGGTGCCGTGCATTCTTTTTCACCCTAACAAGATCAGCCAGGCATTGGTTTGAGAGGCTGAAAAGGAGATCCATCAGCTGTTTCAAGGATTTAGCCCGAGCATTCCTTGCACAGTTCATGGGGCCAGAGAAAAGCGAAAGCCTCACATCAACCTCTTAACAGTCAAACAGCAGTCAGGTGAGAGCTTGTGTGATTACATAACGCGTTTTAACGACGAAGCACCGCAGGTTGAGGGATACAGTGAGGGAGCAGCCCTAGTAGCCATCACAGCCGGACTGGAAGACGAAAGACTACTCAACTCAATAGGTAAGAGCCAACCTCGAACCTATGCAGAGTTCATCTCTCGAGCACACAAATACATGAGTGCAGAGGAGTTGCTCAAGTCAAAGAAGACGGAACGAGAGCACAAAAGGTCTTCTTCATCTAACTACGACAGTAAGAAGGACAAAAGGCAGCAGACCGACGAGGGAGGCCGAGGCCGAGCAGACCATGGCCGAGGCCGACCAGACCAAGGAGACTACTTGAATAAGTTTGAAAAGTACACCCCTACTTCAATCCCACAGGAGCAGATCTTGATGGAGATAAGGAACACAAACCTACTCAGCGCACCCAAGAAGCTGAAGTCAAATCCTGACAACAGAGGCAAAAGCCAGTATTTTCTCTTCCATCGAGATCATGGACATTCAACCAGGAACTGCATTCAGCTGAAAGACGAGATCGAAGCGTTGATCCAAAACGGATACCTGAAGGAATTCACCACAAAGGTCGAGACCGACCAGAGATGGCCGAGGCCGACTAGAGATGACCCGGGCAAAGATGGTGGTGGACCTCTTCTGGAAATCCGTTGA

mRNA sequence

ATGGAAGAACTAATCGACCAAGTCGACCCACCCTTCACAGAAAAAGTCATGAAAGCTGAGGTGCCCCAGAAGTTCAAGCTGTTTCAAGGATTTAGCCCGAGCATTCCTTGCACAGTTCATGGGGCCAGAGAAAAGCGAAAGCCTCACATCAACCTCTTAACAGTCAAACAGCAGTCAGGTGAGAGCTTGTGTGATTACATAACGCGTTTTAACGACGAAGCACCGCAGGTTGAGGGATACAGTGAGGGAGCAGCCCTAGTAGCCATCACAGCCGGACTGGAAGACGAAAGACTACTCAACTCAATAGGTAAGAGCCAACCTCGAACCTATGCAGAGTTCATCTCTCGAGCACACAAATACATGAGTGCAGAGGAGTTGCTCAAGTCAAAGAAGACGGAACGAGAGCACAAAAGGTCTTCTTCATCTAACTACGACAGTAAGAAGGACAAAAGGCAGCAGACCGACGAGGGAGGCCGAGGCCGAGCAGACCATGGCCGAGGCCGACCAGACCAAGGAGACTACTTGAATAAGTTTGAAAAGTACACCCCTACTTCAATCCCACAGGAGCAGATCTTGATGGAGATAAGGAACACAAACCTACTCAGCGCACCCAAGAAGCTGAAGTCAAATCCTGACAACAGAGGCAAAAGCCAGTATTTTCTCTTCCATCGAGATCATGGACATTCAACCAGGAACTGCATTCAGCTGAAAGACGAGATCGAAGCGTTGATCCAAAACGGATACCTGAAGGAATTCACCACAAAGGTCGAGACCGACCAGAGATGGCCGAGGCCGACTAGAGATGACCCGGGCAAAGATGGTGGTGGACCTCTTCTGGAAATCCGTTGA

Coding sequence (CDS)

ATGGAAGAACTAATCGACCAAGTCGACCCACCCTTCACAGAAAAAGTCATGAAAGCTGAGGTGCCCCAGAAGTTCAAGCTGTTTCAAGGATTTAGCCCGAGCATTCCTTGCACAGTTCATGGGGCCAGAGAAAAGCGAAAGCCTCACATCAACCTCTTAACAGTCAAACAGCAGTCAGGTGAGAGCTTGTGTGATTACATAACGCGTTTTAACGACGAAGCACCGCAGGTTGAGGGATACAGTGAGGGAGCAGCCCTAGTAGCCATCACAGCCGGACTGGAAGACGAAAGACTACTCAACTCAATAGGTAAGAGCCAACCTCGAACCTATGCAGAGTTCATCTCTCGAGCACACAAATACATGAGTGCAGAGGAGTTGCTCAAGTCAAAGAAGACGGAACGAGAGCACAAAAGGTCTTCTTCATCTAACTACGACAGTAAGAAGGACAAAAGGCAGCAGACCGACGAGGGAGGCCGAGGCCGAGCAGACCATGGCCGAGGCCGACCAGACCAAGGAGACTACTTGAATAAGTTTGAAAAGTACACCCCTACTTCAATCCCACAGGAGCAGATCTTGATGGAGATAAGGAACACAAACCTACTCAGCGCACCCAAGAAGCTGAAGTCAAATCCTGACAACAGAGGCAAAAGCCAGTATTTTCTCTTCCATCGAGATCATGGACATTCAACCAGGAACTGCATTCAGCTGAAAGACGAGATCGAAGCGTTGATCCAAAACGGATACCTGAAGGAATTCACCACAAAGGTCGAGACCGACCAGAGATGGCCGAGGCCGACTAGAGATGACCCGGGCAAAGATGGTGGTGGACCTCTTCTGGAAATCCGTTGA

Protein sequence

MEELIDQVDPPFTEKVMKAEVPQKFKLFQGFSPSIPCTVHGAREKRKPHINLLTVKQQSGESLCDYITRFNDEAPQVEGYSEGAALVAITAGLEDERLLNSIGKSQPRTYAEFISRAHKYMSAEELLKSKKTEREHKRSSSSNYDSKKDKRQQTDEGGRGRADHGRGRPDQGDYLNKFEKYTPTSIPQEQILMEIRNTNLLSAPKKLKSNPDNRGKSQYFLFHRDHGHSTRNCIQLKDEIEALIQNGYLKEFTTKVETDQRWPRPTRDDPGKDGGGPLLEIR

Homology

[Close]

BLAST of Lag0001687.1 vs. NCBI nr
Match: XP_022158830.1 (uncharacterized protein LOC111025293 [Momordica charantia])

HSP 1 Score: 193.4 bits (490), Expect = 2.7e-45
Identity = 125/341 (36.66%), Postives = 180/341 (52.79%), Query Frame = 0


Query: 1   MEELIDQVDPPFTEKVMKAEVPQKFKL------------------------FQGFSPSIP 60
           +EEL+DQ D PFTE++M+ +VP KFKL                          G S ++ 
Sbjct: 169 LEELLDQADSPFTEEIMREKVPPKFKLPTVKQFDXTTDPVDHLDAYREWMDIYGVSEAVR 228

Query: 61  CTVH-----------------------------------GAREKRKPHINLLTVKQQSGE 120
           C V                                    G R + +P   LLT+KQ++ E
Sbjct: 229 CRVFSTTLNGSARIWFRQLKRGSISSFKSLARAFVTQFVGGRCRSRPVAYLLTIKQRTTE 288

Query: 121 SLCDYITRFNDEAPQVEGYSEGAALVAITAGLEDERLLNSIGKSQPRTYAEFISRAHKYM 180
           SL DY+ RFN+E  QVEG ++  +L+A  +G+ DE L  S GK  P T++E +SRA +YM
Sbjct: 289 SLRDYVARFNEEKLQVEGLTDAVSLLAFMSGVRDEHLSFSFGKRTPNTFSEALSRAQRYM 348

Query: 181 SAEELLKSKKTEREHKRSSSSNYDSKKDKRQQTDEGGRGRADHGRGRPDQGDYLNKFEKY 240
           SA E   SK+ E + KR+     D K+++     +G R      R R  Q D   KFEKY
Sbjct: 349 SAGEFFYSKR-EPDGKRT-----DPKRERSGDKPQGSRWEK---RDRSSQKDPPRKFEKY 408

Query: 241 TPTSIPQEQILMEIRNTNLLSAPKKLKSNPDNRGKSQYFLFHRDHGHSTRNCIQLKDEIE 283
           TPT++P EQ+LMEI++  LL  P+++K++   R K +Y LFHRDHGH+T++C  LK+E+E
Sbjct: 409 TPTTVPIEQVLMEIKDQRLLKWPERMKASSAKRSKGRYCLFHRDHGHATQDCFDLKEEVE 468

[Close]

BLAST of Lag0001687.1 vs. NCBI nr
Match: XP_022142767.1 (uncharacterized protein LOC111012805 [Momordica charantia])

HSP 1 Score: 166.8 bits (421), Expect = 2.7e-37
Identity = 108/282 (38.30%), Postives = 150/282 (53.19%), Query Frame = 0


Query: 1   MEELIDQVDPPFTEKVMKAEVPQKFKLFQGFSPSIPCTVHGAREKRKPHINLLTVKQQSG 60
           +EEL+DQ D PFTE++M                         REKR            + 
Sbjct: 90  LEELLDQADSPFTEEIM-------------------------REKR------------TT 149

Query: 61  ESLCDYITRFNDEAPQVEGYSEGAALVAITAGLEDERLLNSIGKSQPRTYAEFISRAHKY 120
           ESL DY+TRFN E  QVEG ++  +L+A   G+ DE L  S GK  P T++E +SRA +Y
Sbjct: 150 ESLHDYVTRFNKEKLQVEGLTDAVSLLAFIFGVRDEHLSFSFGKRTPSTFSEALSRAQRY 209

Query: 121 MSAEELLKSKKTEREHKRSSSSNYDSKKDKRQQTDEGGRGRADHGRGRPDQGDYLNKFEK 180
           MSA E   SK      + S+    D K+++     +G R      R R  Q D   KFEK
Sbjct: 210 MSAGEFFYSK------RESNGKRTDQKRERSGDKPQGSRWEK---RDRSCQKDPPQKFEK 269

Query: 181 YTPTSIPQEQILMEIRNTNLLSAPKKLKSNPDNRGKSQYFLFHRDHGHSTRNCIQLKDEI 240
           YT T++P EQ+LMEI+N  LL  P+++ ++   R K +Y LFH DHGH+T++C  LK+E+
Sbjct: 270 YTSTTVPLEQVLMEIKNQRLLKWPERMNASSTKRSKGRYCLFHWDHGHATQDCFDLKEEV 316

Query: 241 EALIQNGYLKEFTTKVETDQRWPRPTRDDPGKDGGGPLLEIR 283
           E LI  GYLKE+  +       P+ T++  G+    P  EIR
Sbjct: 330 EGLILRGYLKEYVEE-------PKATQN--GESDKSPAREIR 316

[Close]

BLAST of Lag0001687.1 vs. NCBI nr
Match: XP_022159368.1 (uncharacterized protein LOC111025785 [Momordica charantia])

HSP 1 Score: 164.9 bits (416), Expect = 1.0e-36
Identity = 99/242 (40.91%), Postives = 145/242 (59.92%), Query Frame = 0


Query: 41  GAREKRKPHINLLTVKQQSGESLCDYITRFNDEAPQVEGYSEGAALVAITAGLEDERLLN 100
           G R + +P   LLT+KQ++ ESL DY+ RFN E  Q+E  ++  +L+A  +G+ DE L  
Sbjct: 52  GGRCRSRPVAYLLTIKQRTTESLHDYVARFNKEKLQIESLTDVVSLLAFMSGVRDEHLSF 111

Query: 101 SIGKSQPRTYAEFISRAHKYMSAEELLKSKKTEREHKRSSSSNYDSKKDKRQQTDEGGRG 160
           S GK  P T++E +SRA +YMSA E   SK+ E + KR+     D K+++     +G R 
Sbjct: 112 SFGKKTPSTFSETLSRAQRYMSAGEFFYSKR-EPDGKRT-----DQKRERSGDKPQGSRW 171

Query: 161 RADHGRGRPDQGDYLNKFEKYTPTSIPQEQILMEIRNTNLLSAPKKLKSNPDNRGKSQYF 220
                R R  Q D   KFEKYTPT++P EQ+LMEI++  LL  P+++K     R K +Y 
Sbjct: 172 EK---RDRSSQKDPPRKFEKYTPTTVPLEQVLMEIKDQRLLKWPERMKVPSTKRSKGRYC 231

Query: 221 LFHRDHGHSTRNCIQLKDEIEALIQNGYLKEFTTKVETDQRWPRPTRDDPGKDGGGPLLE 280
           LFHRDH H+T++   LK+E+E LI+ GYL+E+  +       P+ T++  G+    P  E
Sbjct: 232 LFHRDHNHATQDYFDLKEEVEGLIRRGYLQEYVEE-------PKATQN--GESEKSPARE 275

Query: 281 IR 283
           IR
Sbjct: 292 IR 275

[Close]

BLAST of Lag0001687.1 vs. NCBI nr
Match: XP_024041095.1 (uncharacterized protein LOC112098853 [Citrus clementina])

HSP 1 Score: 156.4 bits (394), Expect = 3.7e-34
Identity = 87/249 (34.94%), Postives = 133/249 (53.41%), Query Frame = 0


Query: 22  PQKFKLFQGFSPSIPCTVHGAREKRKPHINLLTVKQQSGESLCDYITRFNDEAPQVEGYS 81
           P     F   S         AR++ KP   LLTVKQQ GE+L DYI R+N+E  QV+GY 
Sbjct: 246 PHSISSFGDLSREFTSHFRSARQRGKPVTYLLTVKQQEGETLRDYIRRYNNEITQVDGYD 305

Query: 82  EGAALVAITAGLEDERLLNSIGKSQPRTYAEFISRAHKYMSAEELLKSKKTEREHKRSSS 141
           +G AL  I  GL   +L  S+ K  P +Y+E ++RA KY +AEE  K++  E+       
Sbjct: 306 DGIALSGIMEGLRMGKLWWSVSKRPPTSYSEMLARAEKYANAEERFKNRNQEKGESTKGK 365

Query: 142 SNYDSKKDKRQQTDEGGRGR-----ADHGRGRPDQGDYLNKFEKYTPTSIPQEQILMEIR 201
              D ++++R    +    R      +    R  +    ++F  +T  + P+EQILM++R
Sbjct: 366 KKKDDQRERRVVRPDQSLRRNQFRPGERSEVRDTRPRLASQFTNFTELNTPREQILMQVR 425

Query: 202 NTNLLSAPKKLKSNPDNRGKSQYFLFHRDHGHSTRNCIQLKDEIEALIQNGYLKEFTTKV 261
           N  L   P  +K+NP  R  ++Y  FH+DHGH T  C +LK++IE+L++ G L+E+    
Sbjct: 426 NPTLFRTPPPMKTNPSRRNPNKYCHFHKDHGHDTSECFELKEQIESLVRQGQLQEYVRNP 485

Query: 262 ETDQRWPRP 266
           E   +  +P
Sbjct: 486 EDRVKSEQP 494

[Close]

BLAST of Lag0001687.1 vs. NCBI nr
Match: XP_024042801.1 (uncharacterized protein LOC112099618 [Citrus clementina])

HSP 1 Score: 152.5 bits (384), Expect = 5.3e-33
Identity = 88/216 (40.74%), Postives = 129/216 (59.72%), Query Frame = 0


Query: 41  GAREKRKPHINLLTVKQQSGESLCDYITRFNDEAPQVEGYSEGAALVAITAGLEDERLLN 100
           GAR+++ P    L VKQ   ESL D ITRFN E  +VE YS+  AL  I  GL+  +   
Sbjct: 74  GARDQQFPPTYFLLVKQGKDESLKDCITRFNKEVVRVENYSDAVALTTIMVGLQPGKFHY 133

Query: 101 SIGKSQPRTYAEFISRAHKYMSAEELLKSKKTEREHKRSSSSNYDSKKDKRQQTDEGGRG 160
           S+ K+  RT+ E +SRA KY + +EL  +       KR ++S+     +KR+  +E  + 
Sbjct: 134 SLAKNPARTFTELLSRAQKYSNVDELTNA-------KRGANSDSPRVAEKRKIKEEQIKN 193

Query: 161 RADHGRGRPDQGDYL-NKFEKYTPTSIPQEQILMEIRNTNLLSAPKKLKSNPDNRGKSQY 220
           +    R        L ++F +YTP ++P+EQ+LM+IRN +LL  PK +K  P+ R +S+Y
Sbjct: 194 KEKTSRLEKKGPKILQSRFPRYTPLNLPEEQVLMQIRNLDLLRKPKDIKIAPNRRDRSKY 253

Query: 221 FLFHRDHGHSTRNCIQLKDEIEALIQNGYLKEFTTK 256
             +HRDH H+  +C  LK+EI++LIQ GYLKEF  K
Sbjct: 254 CRYHRDHRHNIEDCFDLKEEIKSLIQRGYLKEFVRK 282

[Close]

BLAST of Lag0001687.1 vs. ExPASy TrEMBL
Match: A0A6J1DWY0 (uncharacterized protein LOC111025293 OS=Momordica charantia OX=3673 GN=LOC111025293 PE=4 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 1.3e-45
Identity = 125/341 (36.66%), Postives = 180/341 (52.79%), Query Frame = 0


Query: 1   MEELIDQVDPPFTEKVMKAEVPQKFKL------------------------FQGFSPSIP 60
           +EEL+DQ D PFTE++M+ +VP KFKL                          G S ++ 
Sbjct: 169 LEELLDQADSPFTEEIMREKVPPKFKLPTVKQFDXTTDPVDHLDAYREWMDIYGVSEAVR 228

Query: 61  CTVH-----------------------------------GAREKRKPHINLLTVKQQSGE 120
           C V                                    G R + +P   LLT+KQ++ E
Sbjct: 229 CRVFSTTLNGSARIWFRQLKRGSISSFKSLARAFVTQFVGGRCRSRPVAYLLTIKQRTTE 288

Query: 121 SLCDYITRFNDEAPQVEGYSEGAALVAITAGLEDERLLNSIGKSQPRTYAEFISRAHKYM 180
           SL DY+ RFN+E  QVEG ++  +L+A  +G+ DE L  S GK  P T++E +SRA +YM
Sbjct: 289 SLRDYVARFNEEKLQVEGLTDAVSLLAFMSGVRDEHLSFSFGKRTPNTFSEALSRAQRYM 348

Query: 181 SAEELLKSKKTEREHKRSSSSNYDSKKDKRQQTDEGGRGRADHGRGRPDQGDYLNKFEKY 240
           SA E   SK+ E + KR+     D K+++     +G R      R R  Q D   KFEKY
Sbjct: 349 SAGEFFYSKR-EPDGKRT-----DPKRERSGDKPQGSRWEK---RDRSSQKDPPRKFEKY 408

Query: 241 TPTSIPQEQILMEIRNTNLLSAPKKLKSNPDNRGKSQYFLFHRDHGHSTRNCIQLKDEIE 283
           TPT++P EQ+LMEI++  LL  P+++K++   R K +Y LFHRDHGH+T++C  LK+E+E
Sbjct: 409 TPTTVPIEQVLMEIKDQRLLKWPERMKASSAKRSKGRYCLFHRDHGHATQDCFDLKEEVE 468

[Close]

BLAST of Lag0001687.1 vs. ExPASy TrEMBL
Match: A0A6J1CNT2 (uncharacterized protein LOC111012805 OS=Momordica charantia OX=3673 GN=LOC111012805 PE=4 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 1.3e-37
Identity = 108/282 (38.30%), Postives = 150/282 (53.19%), Query Frame = 0


Query: 1   MEELIDQVDPPFTEKVMKAEVPQKFKLFQGFSPSIPCTVHGAREKRKPHINLLTVKQQSG 60
           +EEL+DQ D PFTE++M                         REKR            + 
Sbjct: 90  LEELLDQADSPFTEEIM-------------------------REKR------------TT 149

Query: 61  ESLCDYITRFNDEAPQVEGYSEGAALVAITAGLEDERLLNSIGKSQPRTYAEFISRAHKY 120
           ESL DY+TRFN E  QVEG ++  +L+A   G+ DE L  S GK  P T++E +SRA +Y
Sbjct: 150 ESLHDYVTRFNKEKLQVEGLTDAVSLLAFIFGVRDEHLSFSFGKRTPSTFSEALSRAQRY 209

Query: 121 MSAEELLKSKKTEREHKRSSSSNYDSKKDKRQQTDEGGRGRADHGRGRPDQGDYLNKFEK 180
           MSA E   SK      + S+    D K+++     +G R      R R  Q D   KFEK
Sbjct: 210 MSAGEFFYSK------RESNGKRTDQKRERSGDKPQGSRWEK---RDRSCQKDPPQKFEK 269

Query: 181 YTPTSIPQEQILMEIRNTNLLSAPKKLKSNPDNRGKSQYFLFHRDHGHSTRNCIQLKDEI 240
           YT T++P EQ+LMEI+N  LL  P+++ ++   R K +Y LFH DHGH+T++C  LK+E+
Sbjct: 270 YTSTTVPLEQVLMEIKNQRLLKWPERMNASSTKRSKGRYCLFHWDHGHATQDCFDLKEEV 316

Query: 241 EALIQNGYLKEFTTKVETDQRWPRPTRDDPGKDGGGPLLEIR 283
           E LI  GYLKE+  +       P+ T++  G+    P  EIR
Sbjct: 330 EGLILRGYLKEYVEE-------PKATQN--GESDKSPAREIR 316

[Close]

BLAST of Lag0001687.1 vs. ExPASy TrEMBL
Match: A0A6J1DYL6 (uncharacterized protein LOC111025785 OS=Momordica charantia OX=3673 GN=LOC111025785 PE=4 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 5.0e-37
Identity = 99/242 (40.91%), Postives = 145/242 (59.92%), Query Frame = 0


Query: 41  GAREKRKPHINLLTVKQQSGESLCDYITRFNDEAPQVEGYSEGAALVAITAGLEDERLLN 100
           G R + +P   LLT+KQ++ ESL DY+ RFN E  Q+E  ++  +L+A  +G+ DE L  
Sbjct: 52  GGRCRSRPVAYLLTIKQRTTESLHDYVARFNKEKLQIESLTDVVSLLAFMSGVRDEHLSF 111

Query: 101 SIGKSQPRTYAEFISRAHKYMSAEELLKSKKTEREHKRSSSSNYDSKKDKRQQTDEGGRG 160
           S GK  P T++E +SRA +YMSA E   SK+ E + KR+     D K+++     +G R 
Sbjct: 112 SFGKKTPSTFSETLSRAQRYMSAGEFFYSKR-EPDGKRT-----DQKRERSGDKPQGSRW 171

Query: 161 RADHGRGRPDQGDYLNKFEKYTPTSIPQEQILMEIRNTNLLSAPKKLKSNPDNRGKSQYF 220
                R R  Q D   KFEKYTPT++P EQ+LMEI++  LL  P+++K     R K +Y 
Sbjct: 172 EK---RDRSSQKDPPRKFEKYTPTTVPLEQVLMEIKDQRLLKWPERMKVPSTKRSKGRYC 231

Query: 221 LFHRDHGHSTRNCIQLKDEIEALIQNGYLKEFTTKVETDQRWPRPTRDDPGKDGGGPLLE 280
           LFHRDH H+T++   LK+E+E LI+ GYL+E+  +       P+ T++  G+    P  E
Sbjct: 232 LFHRDHNHATQDYFDLKEEVEGLIRRGYLQEYVEE-------PKATQN--GESEKSPARE 275

Query: 281 IR 283
           IR
Sbjct: 292 IR 275

[Close]

BLAST of Lag0001687.1 vs. ExPASy TrEMBL
Match: A0A7N2N013 (Ribonuclease H OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 6.0e-30
Identity = 88/239 (36.82%), Postives = 134/239 (56.07%), Query Frame = 0


Query: 22  PQKFKLFQGFSPSIPCTVHGAREKRKPHINLLTVKQQSGESLCDYITRFNDEAPQVEGYS 81
           P     F+  S        G    +K    L+ +KQ+  E+L  YI+RFN EA  ++   
Sbjct: 207 PNSISTFKELSAQFTTHFIGGHRYKKSTACLMNIKQREEETLRAYISRFNKEALSIDEAD 266

Query: 82  EGAALVAITAGLEDERLLNSIGKSQPRTYAEFISRAHKYMSAEELLKSKKTEREHKRSSS 141
           +   + A T GL+  + L S+ K+ P+T +E + RA KYM+AE+ L S++ +R  KR   
Sbjct: 267 DKILVAAFTNGLKGGKFLFSLYKNDPKTMSEVLYRATKYMNAEDALLSRE-DRPKKRDRP 326

Query: 142 SNYDSKKDKRQQTDEGGRGRADHGRGRPDQGDYLNKFEKYTPTSIPQEQILMEIRNTNLL 201
              DS++D+ ++    G  R D  R +P  G    +F  +TP + P +Q+LM+I++   L
Sbjct: 327 E--DSRQDQGRKKGRMGDRREDR-RPKPMSG----RFANFTPLNAPIDQVLMQIKDEGSL 386

Query: 202 SAPKKLKSNPDNRGKSQYFLFHRDHGHSTRNCIQLKDEIEALIQNGYLKEFTTKVETDQ 261
           + P KLKS+P  R + +Y  FHRDHGH T +C  LK +IEALI+ G L++F  K  TDQ
Sbjct: 387 TFPGKLKSDPSKRSRDKYCRFHRDHGHDTADCYDLKQQIEALIRQGKLQKFVNKGRTDQ 437

[Close]

BLAST of Lag0001687.1 vs. ExPASy TrEMBL
Match: A0A7N2LNH8 (Ribonuclease H OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 1.3e-29
Identity = 88/239 (36.82%), Postives = 134/239 (56.07%), Query Frame = 0


Query: 22  PQKFKLFQGFSPSIPCTVHGAREKRKPHINLLTVKQQSGESLCDYITRFNDEAPQVEGYS 81
           P     F+  S        G    +K    L+ +KQ+  E+L  YI+RFN EA  ++   
Sbjct: 207 PNSISTFKELSAQFTTHFIGGHRYKKSTACLMNIKQREEETLRAYISRFNKEALSIDEAD 266

Query: 82  EGAALVAITAGLEDERLLNSIGKSQPRTYAEFISRAHKYMSAEELLKSKKTEREHKRSSS 141
           +   + A T GL+  + L S+ K+ P+T +E + RA KYM+AE+ L S++ +R  KR   
Sbjct: 267 DKILVAAFTNGLKGGKFLFSLYKNDPKTMSEVLYRATKYMNAEDALLSRE-DRPKKRDRQ 326

Query: 142 SNYDSKKDKRQQTDEGGRGRADHGRGRPDQGDYLNKFEKYTPTSIPQEQILMEIRNTNLL 201
              DS++D+ ++    G  R D  R +P  G    +F  +TP + P +Q+LM+I++   L
Sbjct: 327 E--DSRQDQGRKKGRMGDRREDR-RPKPMGG----RFASFTPLNAPIDQVLMQIKDEGSL 386

Query: 202 SAPKKLKSNPDNRGKSQYFLFHRDHGHSTRNCIQLKDEIEALIQNGYLKEFTTKVETDQ 261
           + P KLKS+P  R + +Y  FHRDHGH T +C  LK +IEALI+ G L++F  K  TDQ
Sbjct: 387 TFPGKLKSDPSKRPRDKYCRFHRDHGHDTADCYDLKQQIEALIRQGKLQKFVNKGRTDQ 437

The following BLAST results are available for this feature:

BLAST of Lag0001687.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022158830.1	2.7e-45	36.66	uncharacterized protein LOC111025293 [Momordica charantia]	[more]
XP_022142767.1	2.7e-37	38.30	uncharacterized protein LOC111012805 [Momordica charantia]	[more]
XP_022159368.1	1.0e-36	40.91	uncharacterized protein LOC111025785 [Momordica charantia]	[more]
XP_024041095.1	3.7e-34	34.94	uncharacterized protein LOC112098853 [Citrus clementina]	[more]
XP_024042801.1	5.3e-33	40.74	uncharacterized protein LOC112099618 [Citrus clementina]	[more]

BLAST of Lag0001687.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Lag0001687.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DWY0	1.3e-45	36.66	uncharacterized protein LOC111025293 OS=Momordica charantia OX=3673 GN=LOC111025...	[more]
A0A6J1CNT2	1.3e-37	38.30	uncharacterized protein LOC111012805 OS=Momordica charantia OX=3673 GN=LOC111012...	[more]
A0A6J1DYL6	5.0e-37	40.91	uncharacterized protein LOC111025785 OS=Momordica charantia OX=3673 GN=LOC111025...	[more]
A0A7N2N013	6.0e-30	36.82	Ribonuclease H OS=Quercus lobata OX=97700 PE=4 SV=1	[more]
A0A7N2LNH8	1.3e-29	36.82	Ribonuclease H OS=Quercus lobata OX=97700 PE=4 SV=1	[more]

BLAST of Lag0001687.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 128..177
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 255..275
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 128..175
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 255..282

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lag0001687	Lag0001687	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lag0001687.1.exon2	Lag0001687.1.exon2	exon
Lag0001687.1.exon1	Lag0001687.1.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.Lag0001687.1	cds.Lag0001687.1_2	CDS
cds.Lag0001687.1	cds.Lag0001687.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lag0001687.1	Lag0001687.1-protein	polypeptide