Lag0000984.1 (mRNA) Sponge gourd (AG‐4) v1

Overview
NameLag0000984.1
TypemRNA
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionUnknown protein
Locationchr4: 21652222 .. 21652563 (+)
Sequence length342
RNA-Seq ExpressionLag0000984.1
SyntenyLag0000984.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGCACAGACAAATGAAGGAAGGAACCATGGAAAGAAGGGGCACCACAATCAAGAAATTCATTCTTGTTACGCTAACTCATGCGGATAGAAGACCTACCGCAAAGAAGGAGTTGGTGAGAGACCGGCTTAGGCAACTATTCGACAGCCGGGCCGTTCTAGTGGCAAAGGAACCACATAGTGAAGGTGGGTATCACCTTCATGCGGGGGTATTCAACAGGAATGCCTCCAAGCATACTGCCACTAAGAAGATAAGAGAGTGCTTTACCGGGCAGAGCACTCGATGTGAAATTTCACAAGGCCTGGGCCCCCATATGGTTGTATCTCATCAAAGAAGATAA

mRNA sequence

ATGGAGCACAGACAAATGAAGGAAGGAACCATGGAAAGAAGGGGCACCACAATCAAGAAATTCATTCTTGTTACGCTAACTCATGCGGATAGAAGACCTACCGCAAAGAAGGAGTTGGTGAGAGACCGGCTTAGGCAACTATTCGACAGCCGGGCCGTTCTAGTGGCAAAGGAACCACATAGTGAAGGTGGGTATCACCTTCATGCGGGGGTATTCAACAGGAATGCCTCCAAGCATACTGCCACTAAGAAGATAAGAGAGTGCTTTACCGGGCAGAGCACTCGATGTGAAATTTCACAAGGCCTGGGCCCCCATATGGTTGTATCTCATCAAAGAAGATAA

Coding sequence (CDS)

ATGGAGCACAGACAAATGAAGGAAGGAACCATGGAAAGAAGGGGCACCACAATCAAGAAATTCATTCTTGTTACGCTAACTCATGCGGATAGAAGACCTACCGCAAAGAAGGAGTTGGTGAGAGACCGGCTTAGGCAACTATTCGACAGCCGGGCCGTTCTAGTGGCAAAGGAACCACATAGTGAAGGTGGGTATCACCTTCATGCGGGGGTATTCAACAGGAATGCCTCCAAGCATACTGCCACTAAGAAGATAAGAGAGTGCTTTACCGGGCAGAGCACTCGATGTGAAATTTCACAAGGCCTGGGCCCCCATATGGTTGTATCTCATCAAAGAAGATAA

Protein sequence

MEHRQMKEGTMERRGTTIKKFILVTLTHADRRPTAKKELVRDRLRQLFDSRAVLVAKEPHSEGGYHLHAGVFNRNASKHTATKKIRECFTGQSTRCEISQGLGPHMVVSHQRR
Homology
BLAST of Lag0000984.1 vs. NCBI nr
Match: GFS28431.1 (hypothetical protein Acr_00g0001790 [Actinidia rufa] >GFS28436.1 hypothetical protein Acr_00g0001840 [Actinidia rufa] >GFS28782.1 hypothetical protein Acr_00g0003920 [Actinidia rufa] >GFY82119.1 hypothetical protein Acr_02g0003590 [Actinidia rufa])

HSP 1 Score: 89.7 bits (221), Expect = 1.7e-14
Identity = 48/77 (62.34%), Postives = 60/77 (77.92%), Query Frame = 0

Query: 12 ERRGTTIKKFILVTLTHADRRPTAKKELVRDRLRQLFDSRAVLVAKEPHSE-GGYHLHAG 71
          +R+ +T ++FILVTLTHA+RR    +ELVRDRLR LF+ RA+LVAKE HSE G   +HAG
Sbjct: 6  DRKKSTTREFILVTLTHAERRLDTNRELVRDRLRALFECRAILVAKETHSEVGCKSVHAG 65

Query: 72 VFNRNASKHTATKKIRE 88
          V N  ASKHTAT+K +E
Sbjct: 66 VQNTTASKHTATRKGKE 82

BLAST of Lag0000984.1 vs. NCBI nr
Match: WP_131796644.1 (hypothetical protein [Candidatus Frankia datiscae])

HSP 1 Score: 88.2 bits (217), Expect = 5.0e-14
Identity = 41/79 (51.90%), Postives = 59/79 (74.68%), Query Frame = 0

Query: 11 MERRGTTIKKFILVTLTHADRRPTAKKELVRDRLRQLFDSRAVLVAKEPHSEGGYHLHAG 70
          M+ + +T +K++L+TLTHAD RP  +K  V+DR+R +F+S A++V KE H E G H HAG
Sbjct: 1  MKAKISTTRKYVLLTLTHADMRPEIEKHHVKDRIRGVFESLAIVVVKESHEESGDHFHAG 60

Query: 71 VFNRNASKHTATKKIRECF 90
          +  ++ASKHTATKK+R  F
Sbjct: 61 LIAKDASKHTATKKMRAGF 79

BLAST of Lag0000984.1 vs. NCBI nr
Match: KAF3773510.1 (hypothetical protein EJ110_NYTH47861 [Nymphaea thermarum])

HSP 1 Score: 78.6 bits (192), Expect = 3.9e-11
Identity = 38/72 (52.78%), Postives = 54/72 (75.00%), Query Frame = 0

Query: 18  IKKFILVTLTHADRRPTAKKELVRDRLRQLFDSRAVLVAKEPHSEGGYHLHAGVFNRNAS 77
           IKK +L+TL  AD++  A  ELVRDR R LF   A++VA+EP + GG+HL AGV+  +AS
Sbjct: 73  IKKDLLLTLRCADQQRDATHELVRDRFRSLFRCHAIVVAREPLNGGGFHLIAGVWKTSAS 132

Query: 78  KHTATKKIRECF 90
           KH+A K++++CF
Sbjct: 133 KHSAAKRVQDCF 144

BLAST of Lag0000984.1 vs. NCBI nr
Match: KAA0043060.1 (hypothetical protein E6C27_scaffold43429G00030 [Cucumis melo var. makuwa] >TYK19876.1 hypothetical protein E5676_scaffold80804G00030 [Cucumis melo var. makuwa])

HSP 1 Score: 77.4 bits (189), Expect = 8.7e-11
Identity = 38/92 (41.30%), Postives = 60/92 (65.22%), Query Frame = 0

Query: 3  HRQMKEGTMERRGTTIKKFILVTLTHADRRPTAK--KELVRDRLRQLFDSRAVLVAKEPH 62
          HR+M    +    + +++FIL+TL+ ADR   AK    ++ +R+R+LF+  A+++AKE H
Sbjct: 4  HRKM----VRNFSSNLRRFILITLSQADREDRAKVTPHMISERIRELFECTAIVIAKEKH 63

Query: 63 SEGGYHLHAGVFNRNASKHTATKKIRECFTGQ 93
           +G  H H  V N+NAS+HTA K IR+ F G+
Sbjct: 64 KDGSAHFHVAVLNQNASRHTAAKLIRKKFPGR 91

BLAST of Lag0000984.1 vs. NCBI nr
Match: TKS17442.1 (hypothetical protein D5086_0000013430 [Populus alba])

HSP 1 Score: 69.7 bits (169), Expect = 1.8e-08
Identity = 35/36 (97.22%), Postives = 35/36 (97.22%), Query Frame = 0

Query: 6  MKEGTMERRGTTIKKFILVTLTHADRRPTAKKELVR 42
          MKEGTMERR TTIKKFILVTLTHADRRPTAKKELVR
Sbjct: 1  MKEGTMERRDTTIKKFILVTLTHADRRPTAKKELVR 36

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
GFS28431.11.7e-1462.34hypothetical protein Acr_00g0001790 [Actinidia rufa] >GFS28436.1 hypothetical pr... [more]
WP_131796644.15.0e-1451.90hypothetical protein [Candidatus Frankia datiscae][more]
KAF3773510.13.9e-1152.78hypothetical protein EJ110_NYTH47861 [Nymphaea thermarum][more]
KAA0043060.18.7e-1141.30hypothetical protein E6C27_scaffold43429G00030 [Cucumis melo var. makuwa] >TYK19... [more]
TKS17442.11.8e-0897.22hypothetical protein D5086_0000013430 [Populus alba][more]
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Lag0000984Lag0000984gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Lag0000984.1.exon1Lag0000984.1.exon1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
cds.Lag0000984.1cds.Lag0000984.1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Lag0000984.1Lag0000984.1-proteinpolypeptide