Lag0000682.1 (mRNA) Sponge gourd (AG‐4) v1

Overview


Name	Lag0000682.1
Type	mRNA
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Unknown protein
Location	chr4: 12630757 .. 12631914 (-)
Sequence length	603
RNA-Seq Expression	Lag0000682.1
Synteny	Lag0000682.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACGCTTCTCAATTACCTCCTACAACTTCCACACCCGTCAAGCCAAAAATCAGAACGCCTAAAGCTCCATCATTAAAGAATTCGTTCCCTAAAGTCTTCATGGATGTTAATTTCCAAGAGAAGATGAAGATTGTGAGAAAAAGGGACTTCCTGAATGAGAGGGATTCTCAAACAGAGTAGGGACTTTGCCAAACTTTGTGACCAAGGTCATCACTCAGTACAAATGGCAACAGTTTTGTGCTCACACTTAGGAGGTCGTGGCGCCTCTAGTTGAGAATTTTATGCTCGATTGAGGGAGGAGAGGGAAGATGATTAGTTTCTCTTCGGTTGACATCAACAGGGTGTATCGGATTAAAGCACCTTTGCATCAAAGAGGCAATGATGCAACCAAGAACCCTTCGACCAAACAGTTACAGAAAGCATTGAAGATGGGGCCAACAAAGGAGTTCAGTGGAATGAGTCTCAAACCAAGGTGAAGACACTACTGCCCAATAATCTCAAGCTAGAACCGGTAGTGTGGCTTCACTTTATCAAGAATACACTGATGCCTACAACCCACGATAGCACCATTTCAGTAGAGAGGGTTATGCTTCTCGACAGCATCATGAAGGGTTGGAGATAAACATAAGGAGCATCATCAGAGAGGAGATCCTTTCATGTGGAAGGAAGAAAGCGGGAAAGTTGTTCTTTGGGTTACTTATAACCCAATTGTGCCAGAGGGTGAAGATAGTTCTTGGATAAGATAAAGAGCATCACTTTTTCAAGCCCACCATTGACTTGCCTCTGATAGGGAAGCTTCAACAGAACAACGCTCAAATGAAGGACAAAGCTTCAACTTCCCACGCTACTCCATCCCCAACGCTGAATCCTGCTTCACCTCCTCAGCACACTCCTGTTTCAGGGCCTACACCATCATCAAAGGCCCTTGCATTTGGCTTTCAGTAAGCTAGACCGGATTGAAGACAAGTTGAAAACTTACTGGGTCTATACGAAGGAAAGAGATGAAGCAAATAGAGAGTTCTACCTCTCTATCGCCCCAAAATTGCCCCTGTGTTCCCTGACCTCCCTCAATCTCTGCTGCCTCCAGAGGAGGAAGAATCTGAAGATGAAGATGAAGATGAAAGAGATGAAAAGAGGTCATCGGATGAGGAATAG

mRNA sequence

ATGGACGCTTCTCAATTACCTCCTACAACTTCCACACCCGTCAAGCCAAAAATCAGAACGCCTAAAGCTCCATCATTAAAGAATTCGTTCCCTAAAGTCTTCATGGATGTTAATTTCCAAGAGAAGATGAAGATTGTGAGAAAAAGGGACTTCCTGAATGAGAGGGATTCTCAAACAGAGGTGTATCGGATTAAAGCACCTTTGCATCAAAGAGGCAATGATGCAACCAAGAACCCTTCGACCAAACAGTTACAGAAAGCATTGAAGATGGGGCCAACAAAGGAGTTCAGTGGAATGAGTCTCAAACCAAGGGAAGCTTCAACAGAACAACGCTCAAATGAAGGACAAAGCTTCAACTTCCCACGCTACTCCATCCCCAACGCTGAATCCTGCTTCACCTCCTCAGCACACTCCTGTTTCAGGGCCTACACCATCATCAAAGGCCCTTGCATTTGGCTTTCAAGAGTTCTACCTCTCTATCGCCCCAAAATTGCCCCTGTGTTCCCTGACCTCCCTCAATCTCTGCTGCCTCCAGAGGAGGAAGAATCTGAAGATGAAGATGAAGATGAAAGAGATGAAAAGAGGTCATCGGATGAGGAATAG

Coding sequence (CDS)

ATGGACGCTTCTCAATTACCTCCTACAACTTCCACACCCGTCAAGCCAAAAATCAGAACGCCTAAAGCTCCATCATTAAAGAATTCGTTCCCTAAAGTCTTCATGGATGTTAATTTCCAAGAGAAGATGAAGATTGTGAGAAAAAGGGACTTCCTGAATGAGAGGGATTCTCAAACAGAGGTGTATCGGATTAAAGCACCTTTGCATCAAAGAGGCAATGATGCAACCAAGAACCCTTCGACCAAACAGTTACAGAAAGCATTGAAGATGGGGCCAACAAAGGAGTTCAGTGGAATGAGTCTCAAACCAAGGGAAGCTTCAACAGAACAACGCTCAAATGAAGGACAAAGCTTCAACTTCCCACGCTACTCCATCCCCAACGCTGAATCCTGCTTCACCTCCTCAGCACACTCCTGTTTCAGGGCCTACACCATCATCAAAGGCCCTTGCATTTGGCTTTCAAGAGTTCTACCTCTCTATCGCCCCAAAATTGCCCCTGTGTTCCCTGACCTCCCTCAATCTCTGCTGCCTCCAGAGGAGGAAGAATCTGAAGATGAAGATGAAGATGAAAGAGATGAAAAGAGGTCATCGGATGAGGAATAG

Protein sequence

MDASQLPPTTSTPVKPKIRTPKAPSLKNSFPKVFMDVNFQEKMKIVRKRDFLNERDSQTEVYRIKAPLHQRGNDATKNPSTKQLQKALKMGPTKEFSGMSLKPREASTEQRSNEGQSFNFPRYSIPNAESCFTSSAHSCFRAYTIIKGPCIWLSRVLPLYRPKIAPVFPDLPQSLLPPEEEESEDEDEDERDEKRSSDEE

Homology

The following BLAST results are available for this feature:

BLAST of Lag0000682.1 vs.


Match Name	E-value	Identity	Description

BLAST of Lag0000682.1 vs.


Match Name	E-value	Identity	Description

BLAST of Lag0000682.1 vs.


Match Name	E-value	Identity	Description

BLAST of Lag0000682.1 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..16
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 103..120
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..28
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 168..200
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 94..120
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 177..200

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lag0000682	Lag0000682	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lag0000682.1.exon4	Lag0000682.1.exon4	exon
Lag0000682.1.exon3	Lag0000682.1.exon3	exon
Lag0000682.1.exon2	Lag0000682.1.exon2	exon
Lag0000682.1.exon1	Lag0000682.1.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.Lag0000682.1	cds.Lag0000682.1_4	CDS
cds.Lag0000682.1	cds.Lag0000682.1_3	CDS
cds.Lag0000682.1	cds.Lag0000682.1_2	CDS
cds.Lag0000682.1	cds.Lag0000682.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lag0000682.1	Lag0000682.1-protein	polypeptide