Lag0000646.1 (mRNA) Sponge gourd (AG‐4) v1

Overview
NameLag0000646.1
TypemRNA
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionUnknown protein
Locationchr4: 12009922 .. 12011095 (+)
Sequence length393
RNA-Seq ExpressionLag0000646.1
SyntenyLag0000646.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTAATTTTCAGAAAGGATGGAGATCATGAAGAAAAGAGATTTCCTCAACGAGAAAGGAATTCTCTAACTGAGCAGGAGCACTGCCAGAGTTCGTAAGCAGAGTTATCTTCCAATACAAGTGGCAAGGAGTTTTGTGCTCACCCTCAGGAAGCTGTTGTGCCTCTAGTTCTAATTTTACGCTGGCCTGAGGGAGGAGAGCATTAGCATGGCGGTGTGAGGGGGAAGATGGTCAGTTTCTCCTCAGTCGACATCAACAGGGTGTACAGGATCAAGGCACCCTTGAACCCAAGAGGGAATGACGTGATCAGGAACCCTTCGGCCAAGCAAATGAAGGAACATTAAACTTGTGGCCAACAAAGGGTCCAATGGAAAGATCACAGACAAAGTGAATCTCTAGTGCCAAGTGATTAAAGCCAGAATCGGCAGTGTGGCTTCACTTCATAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAACCGTTTGATGCCAACCACCCACACAACACAATTTCAGTGGATAGAGTGATGCTACTCTATTGTCTTATGAAGGGATTGGAGATCAACGTAGGGAACATTATAGGGATGAGATCTTAGCCTGTGGACGGAAAAGGGCAGGTAAGCTTTTCTTTGGCTCACTCATCACCCAGCTCTGCTAGAGGGTGAAGATTGTGCCAGGCAAGGACGAGGAGCGCCATTTCTTTAAACCAACCATTGACTTGTCTTGATAGGAAAGCTTCAGCAGAACAACATCCAGAGGAAGGATAAAGCCTCCACATCACAGGCTACATCAGGGCCGAATGTAGCCTCTCCATCCGAGCACACTCCTTTTACAGGGCCTTCACCAGCATCGGAAGCCCTAGGCATGGTCCACCACTAGCTTGATCGAATCAGGGAGAACCTGAAGACATATTGGACATATGCCAAAGAGAGGGTGAAGCTATTAGAGAGTTCTATCTCTCTATTACCTCCAGTATTGCTCCAGTCTTTCCTAACTTCCCTCAGTCGCTGCTGCCCCAGGAAGAAGAGGATTTTGATGAAGAGGAAGATGAAGAGAATGAAGAGAAAGAGAGTTCCTCGGCGAGGAATAGGGGAGTTTTCTGA

mRNA sequence

ATGTTAATTTTCAGAAAGGATGGAGATCATGAAGAAAAGAGATTTCCTCAACGAGAAAGGAATTCTCTAACTGAGCAGGAGCACTGCCAGAGGATTGGAGATCAACGTAGGGAACATTATAGGGATGAGATCTTAGCCTGTGGACGGAAAAGGGCAGGAAAGCTTCAGCAGAACAACATCCAGAGGAAGGATAAAGCCTCCACATCACAGGCTACATCAGGGCCGAATGTAGCCTCTCCATCCGAGCACACTCCTTTTACAGGGCCTTCACCAGCATCGGAAGCCCTAGGCATGTCGCTGCTGCCCCAGGAAGAAGAGGATTTTGATGAAGAGGAAGATGAAGAGAATGAAGAGAAAGAGAGTTCCTCGGCGAGGAATAGGGGAGTTTTCTGA

Coding sequence (CDS)

ATGTTAATTTTCAGAAAGGATGGAGATCATGAAGAAAAGAGATTTCCTCAACGAGAAAGGAATTCTCTAACTGAGCAGGAGCACTGCCAGAGGATTGGAGATCAACGTAGGGAACATTATAGGGATGAGATCTTAGCCTGTGGACGGAAAAGGGCAGGAAAGCTTCAGCAGAACAACATCCAGAGGAAGGATAAAGCCTCCACATCACAGGCTACATCAGGGCCGAATGTAGCCTCTCCATCCGAGCACACTCCTTTTACAGGGCCTTCACCAGCATCGGAAGCCCTAGGCATGTCGCTGCTGCCCCAGGAAGAAGAGGATTTTGATGAAGAGGAAGATGAAGAGAATGAAGAGAAAGAGAGTTCCTCGGCGAGGAATAGGGGAGTTTTCTGA

Protein sequence

MLIFRKDGDHEEKRFPQRERNSLTEQEHCQRIGDQRREHYRDEILACGRKRAGKLQQNNIQRKDKASTSQATSGPNVASPSEHTPFTGPSPASEALGMSLLPQEEEDFDEEEDEENEEKESSSARNRGVF
Homology
The following BLAST results are available for this feature:
BLAST of Lag0000646.1 vs.
Match NameE-valueIdentityDescription
BLAST of Lag0000646.1 vs.
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 59..88
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 51..130
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 103..118
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..37

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Lag0000646Lag0000646gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Lag0000646.1.exon1Lag0000646.1.exon1exon
Lag0000646.1.exon2Lag0000646.1.exon2exon
Lag0000646.1.exon3Lag0000646.1.exon3exon
Lag0000646.1.exon4Lag0000646.1.exon4exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
cds.Lag0000646.1cds.Lag0000646.1CDS
cds.Lag0000646.1cds.Lag0000646.1_2CDS
cds.Lag0000646.1cds.Lag0000646.1_3CDS
cds.Lag0000646.1cds.Lag0000646.1_4CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Lag0000646.1Lag0000646.1-proteinpolypeptide