Lag0000340.1 (mRNA) Sponge gourd (AG‐4) v1

Overview
NameLag0000340.1
TypemRNA
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionUnknown protein
Locationchr4: 4612831 .. 4615917 (-)
Sequence length1812
RNA-Seq ExpressionLag0000340.1
SyntenyLag0000340.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGCCCTGCCCTTTCTATGGCACGAGAGCGACTTCTATTTGTTGGTTGGACCTCAAACAGGTTGTTCATTAGAGGAACACTAGGACTTAAGGATAAAGAGGTAACCCAGAGGTAAAACTGTAATTTGACCTAGCTGGGTACGAACACACGTGAAGGACTGACTTGCTATTATTGGTTGATATTCGTGGACACATAAATATATCTGCAGTGAGAAGAGTGCAACTATGGTTCTATAGTGGAGTGAACCATAGTTAACGAACATTGATTAACTTGGTTAATGAGTATAGCCAATTAATCTCATATCGTTGGAGCTTCTGATCTATAGGTCCATTAGGTCCTACCGATAGCTCATTTAGGGCATTCAGGTAAATTTCTAAGGGAGAATTGTATATTCGAAGGGTTCGAATATTAAGTTTAAAATATGAATTGGATTCATATTAAAACTATAGGTTATAAATTAATGCGCATTAGATGCACATCAATACTATAGTTTATATGAGAGAAATATAATTAAATATATGATATTTAATTATAGAATTAATTAATCATTTGTTTTAATTTAATTTAATTAAAATTGATTTAATTGAATTACATTAAAACTATAGGTTATGTGGGAATATTTATATAAATAATAATTAAGTTAATTGTTAAATTAATTATTAATATTAATTAATTAATTTTTATCAATTAAATGTAACTGAATGAAAAATTCAACCCACTAACCTAGGGGAGTTACACGTTCAGAGGGTTTCAAGGAGGGAGTTGCTTATCTTCCGTTAGATCTCCTTCTCCCTCATTCGAACGTTGGTGTGCATCTGACGAATCCCCATTCTCTCTCATTCTCTCGTGTATTCCAGAGAAAGATCACAGAGAACAAAAATTCTTCAATTCCCTTAGTGAGCAATTGCTCCCACAAGCAACCTCAAGCAAGAATCCAGTGAGAATACTGGTGCGAGCGATTGGTGGTGTTCATGCAAAATTCCAGCAAGTGGAAGATTGAAAGGGGCTGGTATCTTTCAAGAACGAAAAGAAGATATTGTTGAAATTCGGTCAAGATCGTCCAAGATAGTAAGTCCTTATCAACCCAATGATCACTAGGATCATCTAGATTAGATATAGGTTGATTTATATGAATTTTAAGCATGTTTTATGGCCTTGTACAACATGTTAAATTTAGTTTTATTGCTGTAATTTGATTTGCGAATTGTATTGGTATTTCAATTAGAATTAAAAACTCTGAGTAGGTTCTGTGCTTTTTTCGCGGCGTAGGGCTTTTATCCCTTGAAAAGGGACTTGGAAGAAGAAATGGAAGCTGAAAGAAAGAAGGAAGAAGAAAAAGAAGAGGCAGAGAGGGCCATCGAAGCTGAAAAAGAAAGAAAACAAGATGAAGAACTCAGGAGAGTGGCTGCTGAACTTCACCTCATTGAGCCAGAAAAAGAAAGAAGAGAAAATTTAAAAGAAGAAGAAAAAAGGAGAAAAAAGCTAAGGACTTTCTTGCAGCTTTTGAGTCATTGCACAAGGCTCAAAGTGAGGAGGAACAGCTGCAGGAAGTCGAAGAAGAGGCCCTTGAAGAAAAATCTGAAAAAGAAAAAGAGAAAGAAAATGAAGGCCAGAATGTGAACGCATTTGGGCCGCATTCTGAAGAAAGCAAAGAAAAGGCCACCGAAGGAGAGCAAGTTGATGAGGCCTTGGATCCTCTGTTTGAATATGATGTTAGACGACCTTCACCAGCTGCTGACAGTACCTTTCCGGGAGAGAAAAAAGATGAAGAGAAAATTGAAATTGAAGAGGCTGAGACCTCCAGTGATTTAGAAGAGAAGAAGAGAAGAAGAGAATTGAGGGCCGAAAGAAGGACCAAGAACAAAAATGACCCCATATTTGCTAACAGGTTGAGGACAAGGTCCATGGACGCCTCTTCTGCAGCTCCTCCTACCTCCACACCTGTCAAACTGACAGCCAAATCACCTAAAGCTCCAAAGAACCTGTTTCCTCAAGTCTTCAGAGATGTCCATTTCCAGGAGAAAATGGAGGTTATGAGAAAACGAGACTTCTTGAACGAGAAGGGATTCTCCAACAGAGCAGGAACCTTGCAAGACTTCGTGACCAACATCATTACCCAGTATAAGTGGCAGGAGTTCTGTGCTCACCCTCAAGAGGTCGTGGTGCCTTTAGTTCGAGAATTTTATGCTGGTCTGAGGGAAGAGAGCATGAGCATGGCAGTGGTGAGAGGTAAAATGGCCAGTTTCTCTTCAGTTGACATCAACAGGGTGTACAGGATCAAAGCACCCTTGCATCCAAGAGGGAATGATGCCATCAAGAACCCCTCAGCCAAGCAGATGAAAGAAGCATTGAAACTAGTGGCCAATAAGGGTTCCAATGGAAGGAATCCCAAACAAAGGTGAAAACATTAGCGCCAAGCGATCTCAAGCAAGAATCAACAGTGTGGCTTCACTTTATCAAGATCAGGTTGATGCCAACAACCCACGATATAACCATTTCAGTAGAGAGAGTTATGATCCTCTACAACATCATGAAGGGGTTTGATATAAACATTGGGAGCACCATCAGAGAAGATATTCTTTCCTGTGGAAGGAAGAAAACAGGGAAGCTGTTCTTTGGGTCACTAATTACCCAATTATGTTAGAGGGTGAAGATAGTTCCTGGGAAAGATGAGGAACGCCACTTTTTCAAGCTAACCACTGATCTACCTCTGATTTGGAAGCTACAACAGAATAATGCCCAAAGAAAAGACAAAGCTTCCACTTCCCAAGCTACTCCACCACCGGGGTTGACACCTGCTTCACTTCCTCAACATACTCCAGTTTCAAGGCCCACACCATCATCAGAGACCCTTGCATTTACCTTCCGACAGCTAGACTGGATTCAAGACAAGCTTAAGGCTTACTGGGTCTATGCCAAGGAGAGAGATGAAGCTATTAGAGAGTTCTACCTCTCTATCGCCTCGAGCATCGACCCCGTGTTTCCTGACTTCCCTCAATCACTACTGCCTCAAGAAGAGAAAGAATCTGATGAAGAAGATGAAGATGAAGAAGATGAAAGAGAGAGTTCCTCGAATGAGGAATAG

mRNA sequence

ATGGGCCCTGCCCTTTCTATGGCACGAGAGCGACTTCTATTTGTTGGTTGGACCTCAAACAGGTTGTTCATTAGAGGAACACTAGGACTTAAGGATAAAGAGGGGAGTTACACGTTCAGAGGGTTTCAAGGAGGGAGTTGCTTATCTTCCGTTAGATCTCCTTCTCCCTCATTCGAACGTTGGTGTGCATCTGACGAATCCCCATTCTCTCTCATTCTCTCGTGTATTCCAGAGAAAGATCACAGAGAACAAAAATTCTTCAATTCCCTTAGTGAGCAATTGCTCCCACAAGCAACCTCAAGCAAGAATCCAGTGAGAATACTGGTGCGAGCGATTGGTGGTGTTCATGCAAAATTCCAGCAAGGCTTTTATCCCTTGAAAAGGGACTTGGAAGAAGAAATGGAAGCTGAAAGAAAGAAGGAAGAAGAAAAAGAAGAGGCAGAGAGGGCCATCGAAGCTGAAAAAGAAAGAAAACAAGATGAAGAACTCAGGAGAGCTCAAAGTGAGGAGGAACAGCTGCAGGAAGTCGAAGAAGAGGCCCTTGAAGAAAAATCTGAAAAAGAAAAAGAGAAAGAAAATGAAGGCCAGAATGTGAACGCATTTGGGCCGCATTCTGAAGAAAGCAAAGAAAAGGCCACCGAAGGAGAGCAAGTTGATGAGGCCTTGGATCCTCTGTTTGAATATGATGTTAGACGACCTTCACCAGCTGCTGACAGTACCTTTCCGGGAGAGAAAAAAGATGAAGAGAAAATTGAAATTGAAGAGGCTGAGACCTCCAGTGATTTAGAAGAGAAGAAGAGAAGAAGAGAATTGAGGGCCGAAAGAAGGACCAAGAACAAAAATGACCCCATATTTGCTAACAGGTTGAGGACAAGGTCCATGGACGCCTCTTCTGCAGCTCCTCCTACCTCCACACCTGTCAAACTGACAGCCAAATCACCTAAAGCTCCAAAGAACCTGTTTCCTCAAGTCTTCAGAGATGTCCATTTCCAGGAGAAAATGGAGGTTATGAGAAAACGAGACTTCTTGAACGAGAAGGGATTCTCCAACAGAGCAGGAACCTTGCAAGACTTCGTGACCAACATCATTACCCAGTATAAGTGGCAGGAGTTCTGTGCTCACCCTCAAGAGGTCGTGGTGCCTTTAGTTCGAGAATTTTATGCTGGTCTGAGGGAAGAGAGCATGAGCATGGCAGTGGTGAGAGGTAAAATGGCCAGTTTCTCTTCAGTTGACATCAACAGGGTGTACAGGATCAAAGCACCCTTGCATCCAAGAGGGAATGATGCCATCAAGAACCCCTCAGCCAAGCAGATGAAAGAAGCATTGAAACTAGTGGCCAATAAGGGTTCCAATGGAAGGAATCCCAAACAAAGGGTGAAGATAGTTCCTGGGAAAGATGAGGAACGCCACTTTTTCAAGCTAACCACTGATCTACCTCTGATTTGGAAGCTACAACAGAATAATGCCCAAAGAAAAGACAAAGCTTCCACTTCCCAAGCTACTCCACCACCGGGGTTGACACCTGCTTCACTTCCTCAACATACTCCAGTTTCAAGGCCCACACCATCATCAGAGACCCTTGCATTTACCTTCCGACAGCTAGACTGGATTCAAGACAAGCTTAAGGCTTACTGGGTCTATGCCAAGGAGAGAGATGAAGCTATTAGAGAGTTCTACCTCTCTATCGCCTCGAGCATCGACCCCGTGTTTCCTGACTTCCCTCAATCACTACTGCCTCAAGAAGAGAAAGAATCTGATGAAGAAGATGAAGATGAAGAAGATGAAAGAGAGAGTTCCTCGAATGAGGAATAG

Coding sequence (CDS)

ATGGGCCCTGCCCTTTCTATGGCACGAGAGCGACTTCTATTTGTTGGTTGGACCTCAAACAGGTTGTTCATTAGAGGAACACTAGGACTTAAGGATAAAGAGGGGAGTTACACGTTCAGAGGGTTTCAAGGAGGGAGTTGCTTATCTTCCGTTAGATCTCCTTCTCCCTCATTCGAACGTTGGTGTGCATCTGACGAATCCCCATTCTCTCTCATTCTCTCGTGTATTCCAGAGAAAGATCACAGAGAACAAAAATTCTTCAATTCCCTTAGTGAGCAATTGCTCCCACAAGCAACCTCAAGCAAGAATCCAGTGAGAATACTGGTGCGAGCGATTGGTGGTGTTCATGCAAAATTCCAGCAAGGCTTTTATCCCTTGAAAAGGGACTTGGAAGAAGAAATGGAAGCTGAAAGAAAGAAGGAAGAAGAAAAAGAAGAGGCAGAGAGGGCCATCGAAGCTGAAAAAGAAAGAAAACAAGATGAAGAACTCAGGAGAGCTCAAAGTGAGGAGGAACAGCTGCAGGAAGTCGAAGAAGAGGCCCTTGAAGAAAAATCTGAAAAAGAAAAAGAGAAAGAAAATGAAGGCCAGAATGTGAACGCATTTGGGCCGCATTCTGAAGAAAGCAAAGAAAAGGCCACCGAAGGAGAGCAAGTTGATGAGGCCTTGGATCCTCTGTTTGAATATGATGTTAGACGACCTTCACCAGCTGCTGACAGTACCTTTCCGGGAGAGAAAAAAGATGAAGAGAAAATTGAAATTGAAGAGGCTGAGACCTCCAGTGATTTAGAAGAGAAGAAGAGAAGAAGAGAATTGAGGGCCGAAAGAAGGACCAAGAACAAAAATGACCCCATATTTGCTAACAGGTTGAGGACAAGGTCCATGGACGCCTCTTCTGCAGCTCCTCCTACCTCCACACCTGTCAAACTGACAGCCAAATCACCTAAAGCTCCAAAGAACCTGTTTCCTCAAGTCTTCAGAGATGTCCATTTCCAGGAGAAAATGGAGGTTATGAGAAAACGAGACTTCTTGAACGAGAAGGGATTCTCCAACAGAGCAGGAACCTTGCAAGACTTCGTGACCAACATCATTACCCAGTATAAGTGGCAGGAGTTCTGTGCTCACCCTCAAGAGGTCGTGGTGCCTTTAGTTCGAGAATTTTATGCTGGTCTGAGGGAAGAGAGCATGAGCATGGCAGTGGTGAGAGGTAAAATGGCCAGTTTCTCTTCAGTTGACATCAACAGGGTGTACAGGATCAAAGCACCCTTGCATCCAAGAGGGAATGATGCCATCAAGAACCCCTCAGCCAAGCAGATGAAAGAAGCATTGAAACTAGTGGCCAATAAGGGTTCCAATGGAAGGAATCCCAAACAAAGGGTGAAGATAGTTCCTGGGAAAGATGAGGAACGCCACTTTTTCAAGCTAACCACTGATCTACCTCTGATTTGGAAGCTACAACAGAATAATGCCCAAAGAAAAGACAAAGCTTCCACTTCCCAAGCTACTCCACCACCGGGGTTGACACCTGCTTCACTTCCTCAACATACTCCAGTTTCAAGGCCCACACCATCATCAGAGACCCTTGCATTTACCTTCCGACAGCTAGACTGGATTCAAGACAAGCTTAAGGCTTACTGGGTCTATGCCAAGGAGAGAGATGAAGCTATTAGAGAGTTCTACCTCTCTATCGCCTCGAGCATCGACCCCGTGTTTCCTGACTTCCCTCAATCACTACTGCCTCAAGAAGAGAAAGAATCTGATGAAGAAGATGAAGATGAAGAAGATGAAAGAGAGAGTTCCTCGAATGAGGAATAG

Protein sequence

MGPALSMARERLLFVGWTSNRLFIRGTLGLKDKEGSYTFRGFQGGSCLSSVRSPSPSFERWCASDESPFSLILSCIPEKDHREQKFFNSLSEQLLPQATSSKNPVRILVRAIGGVHAKFQQGFYPLKRDLEEEMEAERKKEEEKEEAERAIEAEKERKQDEELRRAQSEEEQLQEVEEEALEEKSEKEKEKENEGQNVNAFGPHSEESKEKATEGEQVDEALDPLFEYDVRRPSPAADSTFPGEKKDEEKIEIEEAETSSDLEEKKRRRELRAERRTKNKNDPIFANRLRTRSMDASSAAPPTSTPVKLTAKSPKAPKNLFPQVFRDVHFQEKMEVMRKRDFLNEKGFSNRAGTLQDFVTNIITQYKWQEFCAHPQEVVVPLVREFYAGLREESMSMAVVRGKMASFSSVDINRVYRIKAPLHPRGNDAIKNPSAKQMKEALKLVANKGSNGRNPKQRVKIVPGKDEERHFFKLTTDLPLIWKLQQNNAQRKDKASTSQATPPPGLTPASLPQHTPVSRPTPSSETLAFTFRQLDWIQDKLKAYWVYAKERDEAIREFYLSIASSIDPVFPDFPQSLLPQEEKESDEEDEDEEDERESSSNEE
Homology
[Close]
BLAST of Lag0000340.1 vs. NCBI nr
Match: PON46472.1 (hypothetical protein PanWU01x14_251180, partial [Parasponia andersonii])

HSP 1 Score: 73.6 bits (179), Expect = 6.7e-09
Identity = 49/147 (33.33%), Postives = 74/147 (50.34%), Query Frame = 0 

Query: 337 MRKRDFLNEKGF----SNRAGTLQDFVTNIITQYKWQEFCAHPQEVVVPLVREFYAGLRE 396
           ++ R    EKGF    S   G L  F+  +ITQ+ W++FCAHP++ +VPLVREFYA L +
Sbjct: 38  IQNRPLNAEKGFVLDNSETMGQL-PFIAQVITQHNWKQFCAHPEDPIVPLVREFYANLTD 97

Query: 397 ESMSMAVVRGKMASFSSVDINRVYRIKAPLHPRGNDAIKNPSAKQMKEALKLVANKGSNG 456
              +   VRG   S+S   IN V+ +  P+    ++ I+N + + +   L+ VA  G+  
Sbjct: 98  PEENTVYVRGVQVSWSEEAINAVFGLGDPVDEH-SEFIQNITQQDLITVLETVAAAGAEW 157

Query: 457 RNPKQ------RVKIVPGKDEERHFFK 474
               Q      R  + P      HF K
Sbjct: 158 NVSAQGAYTCIRSALTPAAKVWYHFLK 182

[Close]
BLAST of Lag0000340.1 vs. NCBI nr
Match: XP_038898613.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC120086174 [Benincasa hispida])

HSP 1 Score: 57.8 bits (138), Expect = 3.8e-04
Identity = 53/217 (24.42%), Postives = 96/217 (44.24%), Query Frame = 0 

Query: 246 KDEEKIEIEEAE------------TSSDLEEKKRRRELRAERRTKNKNDPIFANRLRTRS 305
           K+ +K E++ AE              ++ E+KK++ + + +R+ + K     A   + R 
Sbjct: 124 KEAKKKELKAAEAEKEAGVRLKKVAEAEKEDKKKKMKKKEQRKEREKRLRQVARLAQARG 183

Query: 306 MDASSAAPPTSTPVKLTAKSPKAPKNLFPQVFRDVHFQEKMEVMRKRDFLNEKGFSNRAG 365
            D + ++ P S       +S K  +N                     D L E GF     
Sbjct: 184 KDVAESSEPASA----KKRSAKRKEN--------------------DDMLIEMGFYPAPT 243

Query: 366 TLQDFVTNIITQYKWQEFCAHPQEVVVPLVREFYAGLREESMSMAVVRGKMASFSSVDIN 425
            L D +T+II ++ W  F   P  +V  +V +FY G   E+      +G+   FS+ +IN
Sbjct: 244 PLPDLITSIIVEHGWDTFYQCPSIIVPQVVHDFYRGHLHENRDAVTFKGETVYFSTKNIN 303

Query: 426 RVYRIKAPLHPRGNDAIKNPSAKQMKEALKLVANKGS 451
            +Y+++      GN  I +P+ + M+ ALK++A  G+
Sbjct: 304 GLYQMRDNPDAPGNKIIDDPTEELMRNALKVLAQPGT 316

The following BLAST results are available for this feature:
BLAST of Lag0000340.1 vs. NCBI nr
Match NameE-valueIdentityDescription
PON46472.16.7e-0933.33hypothetical protein PanWU01x14_251180, partial [Parasponia andersonii][more]
XP_038898613.13.8e-0424.42LOW QUALITY PROTEIN: uncharacterized protein LOC120086174 [Benincasa hispida][more]
BLAST of Lag0000340.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Lag0000340.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Lag0000340.1 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 126..197
NoneNo IPR availableCOILSCoilCoilcoord: 246..266
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 135..171
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 489..524
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 489..504
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 567..603
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 180..195
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 291..310
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 582..603
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 204..218
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 241..285
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 135..313

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Lag0000340Lag0000340gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Lag0000340.1.exon5Lag0000340.1.exon5exon
Lag0000340.1.exon4Lag0000340.1.exon4exon
Lag0000340.1.exon3Lag0000340.1.exon3exon
Lag0000340.1.exon2Lag0000340.1.exon2exon
Lag0000340.1.exon1Lag0000340.1.exon1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
cds.Lag0000340.1cds.Lag0000340.1_5CDS
cds.Lag0000340.1cds.Lag0000340.1_4CDS
cds.Lag0000340.1cds.Lag0000340.1_3CDS
cds.Lag0000340.1cds.Lag0000340.1_2CDS
cds.Lag0000340.1cds.Lag0000340.1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Lag0000340.1Lag0000340.1-proteinpolypeptide