IVF0026941.1 (mRNA) Melon (IVF77) v1

Overview
NameIVF0026941.1
TypemRNA
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionSerine/threonine-protein phosphatase 7 long form-like protein isoform X1
Locationchr07: 11858732 .. 11858947 (+)
Sequence length216
RNA-Seq ExpressionIVF0026941.1
SyntenyIVF0026941.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATGGTACTTGCTGTCGAACTGCAAACAATGTTATGCCGGTCGATTCCATCCAATCCAACACTCAGACTATTGGCCTGAGTTATCATTCACCGGAGTTCGCCCGAATGCGGACTTACTTAAAGGACCCAGTTGACCAAGAACTACCAGAATCCATAATGAAATGGATTGGAAAGAGTATGATCAATCACTCAGATGCACTCTCTGGAAAGTAG

mRNA sequence

ATGAATGGTACTTGCTGTCGAACTGCAAACAATGTTATGCCGGTCGATTCCATCCAATCCAACACTCAGACTATTGGCCTGAGTTATCATTCACCGGAGTTCGCCCGAATGCGGACTTACTTAAAGGACCCAGTTGACCAAGAACTACCAGAATCCATAATGAAATGGATTGGAAAGAGTATGATCAATCACTCAGATGCACTCTCTGGAAAGTAG

Coding sequence (CDS)

ATGAATGGTACTTGCTGTCGAACTGCAAACAATGTTATGCCGGTCGATTCCATCCAATCCAACACTCAGACTATTGGCCTGAGTTATCATTCACCGGAGTTCGCCCGAATGCGGACTTACTTAAAGGACCCAGTTGACCAAGAACTACCAGAATCCATAATGAAATGGATTGGAAAGAGTATGATCAATCACTCAGATGCACTCTCTGGAAAGTAG

Protein sequence

MNGTCCRTANNVMPVDSIQSNTQTIGLSYHSPEFARMRTYLKDPVDQELPESIMKWIGKSMINHSDALSGK
Homology
BLAST of IVF0026941.1 vs. ExPASy TrEMBL
Match: A0A5D3CWN0 (Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold637G00530 PE=4 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 5.5e-25
Identity = 58/59 (98.31%), Postives = 59/59 (100.00%), Query Frame = 0

Query: 13 MPVDSIQSNTQTIGLSYHSPEFARMRTYLKDPVDQELPESIMKWIGKSMINHSDALSGK 72
          MPVDSIQSNTQTIGLSYHSP+FARMRTYLKDPVDQELPESIMKWIGKSMINHSDALSGK
Sbjct: 1  MPVDSIQSNTQTIGLSYHSPKFARMRTYLKDPVDQELPESIMKWIGKSMINHSDALSGK 59

BLAST of IVF0026941.1 vs. ExPASy TrEMBL
Match: A0A5A7TI34 (Serine/threonine-protein phosphatase 7 long form-like protein isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold75G00540 PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 1.2e-24
Identity = 57/71 (80.28%), Postives = 64/71 (90.14%), Query Frame = 0

Query: 1   MNGTCCRTANNVMPVDSIQSNTQTIGLSYHSPEFARMRTYLKDPVDQELPESIMKWIGKS 60
           MN TCCRT+NNVMPVDSIQSNTQ IGLS HSP+FA+M+TYLKDPVD+E   SIMKWIGKS
Sbjct: 342 MNATCCRTSNNVMPVDSIQSNTQIIGLSCHSPKFAQMQTYLKDPVDREQQGSIMKWIGKS 401

Query: 61  MINHSDALSGK 72
           ++NHSDALS K
Sbjct: 402 LVNHSDALSVK 412

BLAST of IVF0026941.1 vs. ExPASy TrEMBL
Match: A0A5A7SNK7 (Serine/threonine-protein phosphatase 7 long form-like protein isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold848G00830 PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 1.2e-24
Identity = 57/71 (80.28%), Postives = 64/71 (90.14%), Query Frame = 0

Query: 1   MNGTCCRTANNVMPVDSIQSNTQTIGLSYHSPEFARMRTYLKDPVDQELPESIMKWIGKS 60
           MN TCCRT+NNVMPVDSIQSNTQ IGLS HSP+FA+M+TYLKDPVD+E   SIMKWIGKS
Sbjct: 105 MNATCCRTSNNVMPVDSIQSNTQIIGLSCHSPKFAQMQTYLKDPVDREQQGSIMKWIGKS 164

Query: 61  MINHSDALSGK 72
           ++NHSDALS K
Sbjct: 165 LVNHSDALSVK 175

BLAST of IVF0026941.1 vs. ExPASy TrEMBL
Match: A0A5A7U7U0 (Serine/threonine-protein phosphatase 7 long form-like protein isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold60G004770 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 6.1e-24
Identity = 56/71 (78.87%), Postives = 63/71 (88.73%), Query Frame = 0

Query: 1  MNGTCCRTANNVMPVDSIQSNTQTIGLSYHSPEFARMRTYLKDPVDQELPESIMKWIGKS 60
          MN TCCRT+NNVMPVDSIQSN Q IGLS HSP+FA+M+TYLKDPVD+E   SIMKWIGKS
Sbjct: 17 MNATCCRTSNNVMPVDSIQSNIQIIGLSCHSPKFAQMQTYLKDPVDREQQGSIMKWIGKS 76

Query: 61 MINHSDALSGK 72
          ++NHSDALS K
Sbjct: 77 LVNHSDALSVK 87

BLAST of IVF0026941.1 vs. ExPASy TrEMBL
Match: A0A5A7T0Q1 (Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold57G002710 PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 2.3e-23
Identity = 55/69 (79.71%), Postives = 62/69 (89.86%), Query Frame = 0

Query: 1   MNGTCCRTANNVMPVDSIQSNTQTIGLSYHSPEFARMRTYLKDPVDQELPESIMKWIGKS 60
           MN TCC+T N+VM VD IQSNTQTIGLSYHS +FA+MRTYLKD +DQELP SIMKWIGKS
Sbjct: 52  MNATCCQTLNDVMSVDYIQSNTQTIGLSYHSLKFAQMRTYLKDLIDQELPGSIMKWIGKS 111

Query: 61  MINHSDALS 70
           ++NHSDALS
Sbjct: 112 LVNHSDALS 120

BLAST of IVF0026941.1 vs. NCBI nr
Match: TYK15875.1 (serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 121 bits (304), Expect = 2.96e-32
Identity = 58/59 (98.31%), Postives = 59/59 (100.00%), Query Frame = 0

Query: 13 MPVDSIQSNTQTIGLSYHSPEFARMRTYLKDPVDQELPESIMKWIGKSMINHSDALSGK 71
          MPVDSIQSNTQTIGLSYHSP+FARMRTYLKDPVDQELPESIMKWIGKSMINHSDALSGK
Sbjct: 1  MPVDSIQSNTQTIGLSYHSPKFARMRTYLKDPVDQELPESIMKWIGKSMINHSDALSGK 59

BLAST of IVF0026941.1 vs. NCBI nr
Match: KAA0031833.1 (serine/threonine-protein phosphatase 7 long form-like protein isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 119 bits (299), Expect = 2.03e-29
Identity = 57/71 (80.28%), Postives = 64/71 (90.14%), Query Frame = 0

Query: 1   MNGTCCRTANNVMPVDSIQSNTQTIGLSYHSPEFARMRTYLKDPVDQELPESIMKWIGKS 60
           MN TCCRT+NNVMPVDSIQSNTQ IGLS HSP+FA+M+TYLKDPVD+E   SIMKWIGKS
Sbjct: 105 MNATCCRTSNNVMPVDSIQSNTQIIGLSCHSPKFAQMQTYLKDPVDREQQGSIMKWIGKS 164

Query: 61  MINHSDALSGK 71
           ++NHSDALS K
Sbjct: 165 LVNHSDALSVK 175

BLAST of IVF0026941.1 vs. NCBI nr
Match: KAA0042980.1 (serine/threonine-protein phosphatase 7 long form-like protein isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 119 bits (299), Expect = 2.35e-29
Identity = 57/71 (80.28%), Postives = 64/71 (90.14%), Query Frame = 0

Query: 1   MNGTCCRTANNVMPVDSIQSNTQTIGLSYHSPEFARMRTYLKDPVDQELPESIMKWIGKS 60
           MN TCCRT+NNVMPVDSIQSNTQ IGLS HSP+FA+M+TYLKDPVD+E   SIMKWIGKS
Sbjct: 342 MNATCCRTSNNVMPVDSIQSNTQIIGLSCHSPKFAQMQTYLKDPVDREQQGSIMKWIGKS 401

Query: 61  MINHSDALSGK 71
           ++NHSDALS K
Sbjct: 402 LVNHSDALSVK 412

BLAST of IVF0026941.1 vs. NCBI nr
Match: KAA0035171.1 (serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 115 bits (288), Expect = 8.24e-29
Identity = 55/69 (79.71%), Postives = 62/69 (89.86%), Query Frame = 0

Query: 1   MNGTCCRTANNVMPVDSIQSNTQTIGLSYHSPEFARMRTYLKDPVDQELPESIMKWIGKS 60
           MN TCC+T N+VM VD IQSNTQTIGLSYHS +FA+MRTYLKD +DQELP SIMKWIGKS
Sbjct: 52  MNATCCQTLNDVMSVDYIQSNTQTIGLSYHSLKFAQMRTYLKDLIDQELPGSIMKWIGKS 111

Query: 61  MINHSDALS 69
           ++NHSDALS
Sbjct: 112 LVNHSDALS 120

BLAST of IVF0026941.1 vs. NCBI nr
Match: KAA0051993.1 (serine/threonine-protein phosphatase 7 long form-like protein isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 117 bits (293), Expect = 9.27e-29
Identity = 56/71 (78.87%), Postives = 63/71 (88.73%), Query Frame = 0

Query: 1  MNGTCCRTANNVMPVDSIQSNTQTIGLSYHSPEFARMRTYLKDPVDQELPESIMKWIGKS 60
          MN TCCRT+NNVMPVDSIQSN Q IGLS HSP+FA+M+TYLKDPVD+E   SIMKWIGKS
Sbjct: 17 MNATCCRTSNNVMPVDSIQSNIQIIGLSCHSPKFAQMQTYLKDPVDREQQGSIMKWIGKS 76

Query: 61 MINHSDALSGK 71
          ++NHSDALS K
Sbjct: 77 LVNHSDALSVK 87

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3CWN05.5e-2598.31Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo va... [more]
A0A5A7TI341.2e-2480.28Serine/threonine-protein phosphatase 7 long form-like protein isoform X1 OS=Cucu... [more]
A0A5A7SNK71.2e-2480.28Serine/threonine-protein phosphatase 7 long form-like protein isoform X1 OS=Cucu... [more]
A0A5A7U7U06.1e-2478.87Serine/threonine-protein phosphatase 7 long form-like protein isoform X1 OS=Cucu... [more]
A0A5A7T0Q12.3e-2379.71Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo va... [more]
Match NameE-valueIdentityDescription
TYK15875.12.96e-3298.31serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var.... [more]
KAA0031833.12.03e-2980.28serine/threonine-protein phosphatase 7 long form-like protein isoform X1 [Cucumi... [more]
KAA0042980.12.35e-2980.28serine/threonine-protein phosphatase 7 long form-like protein isoform X1 [Cucumi... [more]
KAA0035171.18.24e-2979.71serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var.... [more]
KAA0051993.19.27e-2978.87serine/threonine-protein phosphatase 7 long form-like protein isoform X1 [Cucumi... [more]
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
IVF0026941IVF0026941gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
IVF0026941.1-exonIVF0026941.1-exon-chr07:11858732..11858947exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
IVF0026941.1-cdsIVF0026941.1-cds-chr07:11858732..11858947CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
IVF0026941.1IVF0026941.1-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0010073 meristem maintenance