IVF0026353.1 (mRNA) Melon (IVF77) v1

Overview


Name	IVF0026353.1
Type	mRNA
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Unknown protein
Location	chr04: 12190585 .. 12191122 (-)
Sequence length	441
RNA-Seq Expression	IVF0026353.1
Synteny	IVF0026353.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGGCATCAAGACAAAGATAATGGCTATGAAAAGGAACATCAATCCATAAGTTTCCCCTTTAACACAAACCTTGACGGCTGATGGATCTATAGGTGGCAACGATTCAGGACACGCGAACGGAGAGGGAGGCAGACTTTATGCGGCAGCGATGATTGGGTTCATGAGGAATGCGAGAGGTAGACGAAAACAAGAGCAAATCGTAGCGGCGTGCGGCTCAAACAGAGAGGTAACAAGCTGAACAACGTGCACAGTTTGGGGGTTAAAGCTGACGACTAGGCTGACGAATAGGAAGCGACTTACCAGACTGGAACAAGCTGCAATCCGGTGTGAGGTAGGTCTCGATTGGGATTTGAGTACAACGGAGGTGGAAGTGGATCGAATCGAACGATGTGCTTTACCGGGACTCGACTGCAGGAACCCACGACGGACAGTGACGTGGCGGTGGCGGGCGAAGAAGGACAGAGGAGGAGAGTGGACCACAAGACAACCAAAAGAAGAAGAGGAAGGAGGGGAGTCGGGCAACTGTCGTAAATAG

mRNA sequence

ATGCGGCATCAAGACAAAGATAATGGCTATGAAAAGGAACATCAATCCATAAGACACGCGAACGGAGAGGGAGGCAGACTTTATGCGGCAGCGATGATTGGGTTCATGAGGAATGCGAGAGGTAGACGAAAACAAGAGCAAATCGTAGCGGCGTGCGGCTCAAACAGAGAGCTGACGACTAGGCTGACGAATAGGAAGCGACTTACCAGACTGGAACAAGCTGCAATCCGGTGTGAGGTAGGTCTCGATTGGGATTTGAGTACAACGGAGGTGGAAGTGGATCGAATCGAACGATGTGCTTTACCGGGACTCGACTGCAGGAACCCACGACGGACAGTGACGTGGCGGTGGCGGGCGAAGAAGGACAGAGGAGGAGAGTGGACCACAAGACAACCAAAAGAAGAAGAGGAAGGAGGGGAGTCGGGCAACTGTCGTAAATAG

Coding sequence (CDS)

ATGCGGCATCAAGACAAAGATAATGGCTATGAAAAGGAACATCAATCCATAAGACACGCGAACGGAGAGGGAGGCAGACTTTATGCGGCAGCGATGATTGGGTTCATGAGGAATGCGAGAGGTAGACGAAAACAAGAGCAAATCGTAGCGGCGTGCGGCTCAAACAGAGAGCTGACGACTAGGCTGACGAATAGGAAGCGACTTACCAGACTGGAACAAGCTGCAATCCGGTGTGAGGTAGGTCTCGATTGGGATTTGAGTACAACGGAGGTGGAAGTGGATCGAATCGAACGATGTGCTTTACCGGGACTCGACTGCAGGAACCCACGACGGACAGTGACGTGGCGGTGGCGGGCGAAGAAGGACAGAGGAGGAGAGTGGACCACAAGACAACCAAAAGAAGAAGAGGAAGGAGGGGAGTCGGGCAACTGTCGTAAATAG

Protein sequence

MRHQDKDNGYEKEHQSIRHANGEGGRLYAAAMIGFMRNARGRRKQEQIVAACGSNRELTTRLTNRKRLTRLEQAAIRCEVGLDWDLSTTEVEVDRIERCALPGLDCRNPRRTVTWRWRAKKDRGGEWTTRQPKEEEEGGESGNCRK

Homology

The following BLAST results are available for this feature:

BLAST of IVF0026353.1 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0026353.1 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0026353.1 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0026353.1 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 118..146
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 117..146
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
IVF0026353	IVF0026353	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0026353.1-exon	IVF0026353.1-exon-chr04:12190585..12190854	exon
IVF0026353.1-exon	IVF0026353.1-exon-chr04:12190894..12191012	exon
IVF0026353.1-exon	IVF0026353.1-exon-chr04:12191071..12191122	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0026353.1-cds	IVF0026353.1-cds-chr04:12190585..12190854	CDS
IVF0026353.1-cds	IVF0026353.1-cds-chr04:12190894..12191012	CDS
IVF0026353.1-cds	IVF0026353.1-cds-chr04:12191071..12191122	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
IVF0026353.1	IVF0026353.1-protein	polypeptide