IVF0026170.1 (mRNA) Melon (IVF77) v1

Overview


Name	IVF0026170.1
Type	mRNA
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Unknown protein
Location	tig00000060: 68929 .. 69413 (+)
Sequence length	405
RNA-Seq Expression	IVF0026170.1
Synteny	IVF0026170.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTCGCCAGAAACCAAAGCAAGCATTTTTTTTATGAAGATTGGGAAATGATAGAAATCAAATTCAACTCAGGAGTGATGAAATTTTCGGAACTTTTTGTTGTACCTACCAAGGAAAACTTCACCACAGCTAGACTCAGACAGGGTTGGTATCAAAAAAGTCTTCTCTCACATCATAGTGTCCTTTCTGAAACAGAGAGTTTTGTCATTCTCGAAAGTCAAGTTCAATTGGAAGTTATTTTTCTAAGTTCAGTGGAAGTAGTTGGTTCCCTTTTGGTTTATCTGGAAAAAGGAGCTCAACAATACTTCTCCATTGTCAACCTTCTTCTCAAGTAATGGGGTAGTTGCTCCTTGTCTTTATGTTATCATCTTATGTTTCTCTCTCTTCACACTGTAACTCCCTACTTTTTAGTTGGGCTGTTGGTGGCATCTCTATAGATGACCATACGACTTGCTGTGTCTCAAAGACCAAAGGGGAAACTTAG

mRNA sequence

ATGGTCGCCAGAAACCAAAGCAAGCATTTTTTTTATGAAGATTGGGAAATGATAGAAATCAAATTCAACTCAGGAGTGATGAAATTTTCGGAACTTTTTGTTGTACCTACCAAGGAAAACTTCACCACAGCTAGACTCAGACAGGGTTGGTATCAAAAAAGTCTTCTCTCACATCATAGTGTCCTTTCTGAAACAGAGAGTTTTGTCATTCTCGAAAGTCAAGTTCAATTGGAAGTTATTTTTCTAAGTTCAGTGGAAGTAGTTGGTTCCCTTTTGGTTTATCTGGAAAAAGGAGCTCAACAATACTTCTCCATTGTCAACCTTCTTCTCAATTGGGCTGTTGGTGGCATCTCTATAGATGACCATACGACTTGCTGTGTCTCAAAGACCAAAGGGGAAACTTAG

Coding sequence (CDS)

ATGGTCGCCAGAAACCAAAGCAAGCATTTTTTTTATGAAGATTGGGAAATGATAGAAATCAAATTCAACTCAGGAGTGATGAAATTTTCGGAACTTTTTGTTGTACCTACCAAGGAAAACTTCACCACAGCTAGACTCAGACAGGGTTGGTATCAAAAAAGTCTTCTCTCACATCATAGTGTCCTTTCTGAAACAGAGAGTTTTGTCATTCTCGAAAGTCAAGTTCAATTGGAAGTTATTTTTCTAAGTTCAGTGGAAGTAGTTGGTTCCCTTTTGGTTTATCTGGAAAAAGGAGCTCAACAATACTTCTCCATTGTCAACCTTCTTCTCAATTGGGCTGTTGGTGGCATCTCTATAGATGACCATACGACTTGCTGTGTCTCAAAGACCAAAGGGGAAACTTAG

Protein sequence

MVARNQSKHFFYEDWEMIEIKFNSGVMKFSELFVVPTKENFTTARLRQGWYQKSLLSHHSVLSETESFVILESQVQLEVIFLSSVEVVGSLLVYLEKGAQQYFSIVNLLLNWAVGGISIDDHTTCCVSKTKGET

Homology

[Close]

BLAST of IVF0026170.1 vs. ExPASy TrEMBL
Match: A0A0A0L8W3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G150760 PE=4 SV=1)

HSP 1 Score: 190.3 bits (482), Expect = 5.3e-45
Identity = 100/128 (78.12%), Postives = 110/128 (85.94%), Query Frame = 0


Query: 10  FFYEDWEMIEIKFNSGVMKFSELFVVPTKENFTTARLRQGWYQKSLLSHHSVLSETESFV 69
           FF E+WEMIEIKFNS VMKFS+LFVVPTKENFTTA LRQGWYQKSLLSH +VLSETESFV
Sbjct: 14  FFNENWEMIEIKFNSEVMKFSKLFVVPTKENFTTAGLRQGWYQKSLLSHRNVLSETESFV 73

Query: 70  ILESQVQLEVIFLSSVEVVGSLLVYLEKGAQ---QYFSIVNLLLNWAVGGISIDDHTTCC 129
           IL+SQV+LEVIFLSSVEVVGSLLVYLEK +     +    + ++ WAVGGISIDDH TCC
Sbjct: 74  ILKSQVELEVIFLSSVEVVGSLLVYLEKRSSTILHHCQPYSQVMGWAVGGISIDDHMTCC 133

Query: 130 VSKTKGET 135
           VSK KGET
Sbjct: 134 VSKIKGET 141

[Close]

BLAST of IVF0026170.1 vs. NCBI nr
Match: KGN57047.1 (hypothetical protein Csa_010340 [Cucumis sativus])

HSP 1 Score: 190 bits (483), Expect = 1.39e-59
Identity = 100/128 (78.12%), Postives = 110/128 (85.94%), Query Frame = 0


Query: 10  FFYEDWEMIEIKFNSGVMKFSELFVVPTKENFTTARLRQGWYQKSLLSHHSVLSETESFV 69
           FF E+WEMIEIKFNS VMKFS+LFVVPTKENFTTA LRQGWYQKSLLSH +VLSETESFV
Sbjct: 14  FFNENWEMIEIKFNSEVMKFSKLFVVPTKENFTTAGLRQGWYQKSLLSHRNVLSETESFV 73

Query: 70  ILESQVQLEVIFLSSVEVVGSLLVYLEKGAQ---QYFSIVNLLLNWAVGGISIDDHTTCC 129
           IL+SQV+LEVIFLSSVEVVGSLLVYLEK +     +    + ++ WAVGGISIDDH TCC
Sbjct: 74  ILKSQVELEVIFLSSVEVVGSLLVYLEKRSSTILHHCQPYSQVMGWAVGGISIDDHMTCC 133

Query: 130 VSKTKGET 134
           VSK KGET
Sbjct: 134 VSKIKGET 141

The following BLAST results are available for this feature:

BLAST of IVF0026170.1 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0026170.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L8W3	5.3e-45	78.13	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G150760 PE=4 SV=1	[more]

BLAST of IVF0026170.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN57047.1	1.39e-59	78.13	hypothetical protein Csa_010340 [Cucumis sativus]	[more]

BLAST of IVF0026170.1 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
IVF0026170	IVF0026170	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0026170.1-exon	IVF0026170.1-exon-tig00000060:68929..69260	exon
IVF0026170.1-exon	IVF0026170.1-exon-tig00000060:69341..69413	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0026170.1-cds	IVF0026170.1-cds-tig00000060:68929..69260	CDS
IVF0026170.1-cds	IVF0026170.1-cds-tig00000060:69341..69413	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
IVF0026170.1	IVF0026170.1-protein	polypeptide