IVF0026159.1 (mRNA) Melon (IVF77) v1

Overview
NameIVF0026159.1
TypemRNA
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionSenescence-associated protein
Locationchr01: 8749187 .. 8749429 (+)
Sequence length243
RNA-Seq ExpressionIVF0026159.1
SyntenyIVF0026159.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAGGTCAGTGTGTGCCCCCTGCCTACACAATGATTCCGCATGGGGAGAGCTGTGTGGTGGGGACAACGACGCGTTACGATCAGGCAGACGTGTCCTCAGCCAGAAAGTTGCGGGTGCAACTTGCATTCAAAGATTCGATGGTTTATGGGATCATGCAATTCACACTAAGTATCACATTTCGCTACATTCTTCATCAAAGCGAGAGCCAAGATATCCATTGCTGTGAGTTATACGACTAG

mRNA sequence

ATGGGAGGTCAGTGTGTGCCCCCTGCCTACACAATGATTCCGCATGGGGAGAGCTGTGTGGTGGGGACAACGACGCGTTACGATCAGGCAGACGTGTCCTCAGCCAGAAAGTTGCGGGTGCAACTTGCATTCAAAGATTCGATGGTTTATGGGATCATGCAATTCACACTAAGTATCACATTTCGCTACATTCTTCATCAAAGCGAGAGCCAAGATATCCATTGCTGTGAGTTATACGACTAG

Coding sequence (CDS)

ATGGGAGGTCAGTGTGTGCCCCCTGCCTACACAATGATTCCGCATGGGGAGAGCTGTGTGGTGGGGACAACGACGCGTTACGATCAGGCAGACGTGTCCTCAGCCAGAAAGTTGCGGGTGCAACTTGCATTCAAAGATTCGATGGTTTATGGGATCATGCAATTCACACTAAGTATCACATTTCGCTACATTCTTCATCAAAGCGAGAGCCAAGATATCCATTGCTGTGAGTTATACGACTAG

Protein sequence

MGGQCVPPAYTMIPHGESCVVGTTTRYDQADVSSARKLRVQLAFKDSMVYGIMQFTLSITFRYILHQSESQDIHCCELYD
Homology
BLAST of IVF0026159.1 vs. ExPASy TrEMBL
Match: A0A6N2NG36 (Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS504798 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 3.9e-11
Identity = 38/59 (64.41%), Postives = 45/59 (76.27%), Query Frame = 0

Query: 21   VGTTTRYDQADVSSARKLRVQLAFKDSMVYGIMQFTLSITFRYILHQSESQDIHCCELY 80
            VG T R  QADV S R+ R QLAFKDSMV+GI+QFT SI FRY+LH+ ES+DI C E +
Sbjct: 1025 VGATMRDTQADVPSTRRPRAQLAFKDSMVHGILQFTPSIAFRYVLHRCESRDIRCRESF 1083

BLAST of IVF0026159.1 vs. ExPASy TrEMBL
Match: A0A6N2MTU4 (Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS366767 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 3.9e-11
Identity = 38/59 (64.41%), Postives = 45/59 (76.27%), Query Frame = 0

Query: 21  VGTTTRYDQADVSSARKLRVQLAFKDSMVYGIMQFTLSITFRYILHQSESQDIHCCELY 80
           VG T R  QADV S R+ R QLAFKDSMV+GI+QFT SI FRY+LH+ ES+DI C E +
Sbjct: 793 VGATMRDTQADVPSTRRPRAQLAFKDSMVHGILQFTPSIAFRYVLHRCESRDIRCRESF 851

BLAST of IVF0026159.1 vs. ExPASy TrEMBL
Match: A0A6N2KB50 (Uncharacterized protein (Fragment) OS=Salix viminalis OX=40686 GN=SVIM_LOCUS20822 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 3.9e-11
Identity = 38/59 (64.41%), Postives = 45/59 (76.27%), Query Frame = 0

Query: 21   VGTTTRYDQADVSSARKLRVQLAFKDSMVYGIMQFTLSITFRYILHQSESQDIHCCELY 80
            VG T R  QADV S R+ R QLAFKDSMV+GI+QFT SI FRY+LH+ ES+DI C E +
Sbjct: 1034 VGATMRDTQADVPSTRRPRAQLAFKDSMVHGILQFTPSIAFRYVLHRCESRDIRCRESF 1092

BLAST of IVF0026159.1 vs. ExPASy TrEMBL
Match: A0A6N2MPB6 (Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS385919 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 3.9e-11
Identity = 38/59 (64.41%), Postives = 45/59 (76.27%), Query Frame = 0

Query: 21   VGTTTRYDQADVSSARKLRVQLAFKDSMVYGIMQFTLSITFRYILHQSESQDIHCCELY 80
            VG T R  QADV S R+ R QLAFKDSMV+GI+QFT SI FRY+LH+ ES+DI C E +
Sbjct: 1156 VGATMRDTQADVPSTRRPRAQLAFKDSMVHGILQFTPSIAFRYVLHRCESRDIRCRESF 1214

BLAST of IVF0026159.1 vs. ExPASy TrEMBL
Match: A0A6N2L797 (Uncharacterized protein (Fragment) OS=Salix viminalis OX=40686 GN=SVIM_LOCUS187230 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 3.9e-11
Identity = 38/59 (64.41%), Postives = 45/59 (76.27%), Query Frame = 0

Query: 21   VGTTTRYDQADVSSARKLRVQLAFKDSMVYGIMQFTLSITFRYILHQSESQDIHCCELY 80
            VG T R  QADV S R+ R QLAFKDSMV+GI+QFT SI FRY+LH+ ES+DI C E +
Sbjct: 1173 VGATMRDTQADVPSTRRPRAQLAFKDSMVHGILQFTPSIAFRYVLHRCESRDIRCRESF 1231

BLAST of IVF0026159.1 vs. NCBI nr
Match: GGI43508.1 (hypothetical protein GCM10010896_23760 [Mammaliicoccus stepanovicii])

HSP 1 Score: 74.7 bits (182), Expect = 1.96e-15
Identity = 37/56 (66.07%), Postives = 43/56 (76.79%), Query Frame = 0

Query: 22 GTTTRYDQADVSSARKLRVQLAFKDSMVYGIMQFTLSITFRYILHQSESQDIHCCE 77
          G   R  QA V SAR+LR QLAFKDSMV+GI+QFT SI FRY+LH+ ES+DI C E
Sbjct: 27 GDAMRDAQAGVPSARRLRAQLAFKDSMVHGILQFTPSIAFRYVLHRCESRDIRCRE 82

BLAST of IVF0026159.1 vs. NCBI nr
Match: CAG7876205.1 (unnamed protein product, partial [Brassica rapa])

HSP 1 Score: 78.2 bits (191), Expect = 7.03e-15
Identity = 44/70 (62.86%), Postives = 47/70 (67.14%), Query Frame = 0

Query: 15  HGESCVV-------GTTTRYDQADVSSARKLRVQLAFKDSMVYGIMQFTLSITFRYILHQ 74
           HG S  V       GT     QADV SARKL  QLAFKDSMV+GI+QFT SI F YILH+
Sbjct: 251 HGRSASVPYPREYRGTNICDTQADVPSARKLGAQLAFKDSMVHGILQFTPSIAFCYILHR 310

Query: 75  SESQDIHCCE 77
            ESQDIHC E
Sbjct: 311 CESQDIHCRE 320

BLAST of IVF0026159.1 vs. NCBI nr
Match: KAG6384451.1 (hypothetical protein SASPL_155737 [Salvia splendens])

HSP 1 Score: 78.2 bits (191), Expect = 1.36e-14
Identity = 39/57 (68.42%), Postives = 45/57 (78.95%), Query Frame = 0

Query: 21  VGTTTRYDQADVSSARKLRVQLAFKDSMVYGIMQFTLSITFRYILHQSESQDIHCCE 77
           VG T R  QADV SA+ LR QLAFKDSMV+GI+QFT SI FRY+LH+ ES+DI C E
Sbjct: 322 VGATMRDAQADVPSAKWLRAQLAFKDSMVHGILQFTPSIAFRYVLHRCESRDIRCRE 378

BLAST of IVF0026159.1 vs. NCBI nr
Match: CAF2086451.1 (unnamed protein product [Brassica napus])

HSP 1 Score: 77.8 bits (190), Expect = 1.40e-14
Identity = 42/72 (58.33%), Postives = 49/72 (68.06%), Query Frame = 0

Query: 13  IPHGESCVV-------GTTTRYDQADVSSARKLRVQLAFKDSMVYGIMQFTLSITFRYIL 72
           + HG S  V       GTT    QADV SAR+L  QLAFKDSMV+GI+QFT SI FRY+L
Sbjct: 306 VTHGRSASVPYPREDGGTTICDTQADVPSARRLGAQLAFKDSMVHGILQFTPSIAFRYVL 365

Query: 73  HQSESQDIHCCE 77
           H+ ES+DI C E
Sbjct: 366 HRCESRDIRCQE 377

BLAST of IVF0026159.1 vs. NCBI nr
Match: TKR98956.1 (hypothetical protein D5086_0000197850 [Populus alba])

HSP 1 Score: 77.0 bits (188), Expect = 2.44e-14
Identity = 40/64 (62.50%), Postives = 46/64 (71.88%), Query Frame = 0

Query: 14  PHGESCVVGTTTRYDQADVSSARKLRVQLAFKDSMVYGIMQFTLSITFRYILHQSESQDI 73
           P GE    G T R  QADV S R+ R QLAFKDSMV+GI+QFT SI FRY+LH+ ES+DI
Sbjct: 226 PRGE----GATMRDTQADVPSTRRPRAQLAFKDSMVHGILQFTPSIAFRYVLHRCESRDI 285

Query: 74  HCCE 77
            C E
Sbjct: 286 RCRE 285

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6N2NG363.9e-1164.41Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS504798 PE=4 SV=... [more]
A0A6N2MTU43.9e-1164.41Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS366767 PE=4 SV=... [more]
A0A6N2KB503.9e-1164.41Uncharacterized protein (Fragment) OS=Salix viminalis OX=40686 GN=SVIM_LOCUS2082... [more]
A0A6N2MPB63.9e-1164.41Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS385919 PE=4 SV=... [more]
A0A6N2L7973.9e-1164.41Uncharacterized protein (Fragment) OS=Salix viminalis OX=40686 GN=SVIM_LOCUS1872... [more]
Match NameE-valueIdentityDescription
GGI43508.11.96e-1566.07hypothetical protein GCM10010896_23760 [Mammaliicoccus stepanovicii][more]
CAG7876205.17.03e-1562.86unnamed protein product, partial [Brassica rapa][more]
KAG6384451.11.36e-1468.42hypothetical protein SASPL_155737 [Salvia splendens][more]
CAF2086451.11.40e-1458.33unnamed protein product [Brassica napus][more]
TKR98956.12.44e-1462.50hypothetical protein D5086_0000197850 [Populus alba][more]
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
IVF0026159IVF0026159gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
IVF0026159.1-exonIVF0026159.1-exon-chr01:8749187..8749429exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
IVF0026159.1-cdsIVF0026159.1-cds-chr01:8749187..8749429CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
IVF0026159.1IVF0026159.1-proteinpolypeptide