IVF0025764.1 (mRNA) Melon (IVF77) v1

Overview
NameIVF0025764.1
TypemRNA
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionUnknown protein
Locationchr07: 19268032 .. 19268453 (+)
Sequence length231
RNA-Seq ExpressionIVF0025764.1
SyntenyIVF0025764.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAATTACTTACACTACTCTCGTACACGGTTGGAATCGACCTACTATCACTGGCCAAGACTGATCTAATTTTTACAGAGGTTCTTCGTTACCTCAGTATCTGTTGATATTGTCATTATCGTTTCATGTTCAATTGATCTGAAAATTATTTTTGTTTTATCTTTGACCTTTTCATCAGCGATCAGATCCGTTAATACTGTTTCTTTATGCATTGAGGCAATTCTCCTTCTCTTGTTCAAGACTTCAAATGAAAGAGTCAAAAAGGAAGGGCTGTCCTTAGTCTCTGGAGGTTGGTAGGCTTTTTCTTTATAGCATATTCCATTTCCACTTTGTGTATAGTATCGTTAGTTTGCATGTGGTTTTATATATTTTGAAAACTTGTTATTATCCTTTAACAGATCAGGGAAGCAGAAGTACTTAG

mRNA sequence

ATGAAATTACTTACACTACTCTCGTACACGGTTGGAATCGACCTACTATCACTGGCCAAGACTGATCTAATTTTTACAGAGGTTCTTCGTTACCTCACGATCAGATCCGTTAATACTGTTTCTTTATGCATTGAGGCAATTCTCCTTCTCTTGTTCAAGACTTCAAATGAAAGAGTCAAAAAGGAAGGGCTGTCCTTAGTCTCTGGAGATCAGGGAAGCAGAAGTACTTAG

Coding sequence (CDS)

ATGAAATTACTTACACTACTCTCGTACACGGTTGGAATCGACCTACTATCACTGGCCAAGACTGATCTAATTTTTACAGAGGTTCTTCGTTACCTCACGATCAGATCCGTTAATACTGTTTCTTTATGCATTGAGGCAATTCTCCTTCTCTTGTTCAAGACTTCAAATGAAAGAGTCAAAAAGGAAGGGCTGTCCTTAGTCTCTGGAGATCAGGGAAGCAGAAGTACTTAG

Protein sequence

MKLLTLLSYTVGIDLLSLAKTDLIFTEVLRYLTIRSVNTVSLCIEAILLLLFKTSNERVKKEGLSLVSGDQGSRST
Homology
[Close]
BLAST of IVF0025764.1 vs. ExPASy TrEMBL
Match: A0A0A0KV33 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G055980 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 4.1e-18
Identity = 61/75 (81.33%), Postives = 62/75 (82.67%), Query Frame = 0 

Query: 1  MKLLTLLSYTVGIDLLSLAKTDLIFTEVLRYLTIRSVNTVSLCIEAILLLLFKTSNERVK 60
          MKLLTL SY VGI L SLAKTD I  EVL YLT RSVN VSLCIEAILLLLF+TSNER K
Sbjct: 1  MKLLTLHSYMVGIHLQSLAKTDRISAEVLCYLTTRSVNIVSLCIEAILLLLFQTSNERAK 60

Query: 61 KEGLSLVSGDQGSRS 76
          KE  SLVSGDQGSRS
Sbjct: 61 KEESSLVSGDQGSRS 75

[Close]
BLAST of IVF0025764.1 vs. NCBI nr
Match: KAE8649220.1 (hypothetical protein Csa_015425 [Cucumis sativus])

HSP 1 Score: 56.6 bits (135), Expect = 4.53e-07
Identity = 31/36 (86.11%), Postives = 32/36 (88.89%), Query Frame = 0 

Query: 35  RSVNTVSLCIEAILLLLFKTSNERVKKEGLSLVSGD 70
           RSVN VSLCIEAILLLLF+TSNER KKE  SLVSGD
Sbjct: 814 RSVNIVSLCIEAILLLLFQTSNERAKKEESSLVSGD 849

The following BLAST results are available for this feature:
BLAST of IVF0025764.1 vs.
Match NameE-valueIdentityDescription
BLAST of IVF0025764.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KV334.1e-1881.33Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G055980 PE=4 SV=1[more]
BLAST of IVF0025764.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8649220.14.53e-0786.11hypothetical protein Csa_015425 [Cucumis sativus][more]
BLAST of IVF0025764.1 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
IVF0025764IVF0025764gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
IVF0025764.1-exonIVF0025764.1-exon-chr07:19268032..19268128exon
IVF0025764.1-exonIVF0025764.1-exon-chr07:19268211..19268321exon
IVF0025764.1-exonIVF0025764.1-exon-chr07:19268431..19268453exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
IVF0025764.1-cdsIVF0025764.1-cds-chr07:19268032..19268128CDS
IVF0025764.1-cdsIVF0025764.1-cds-chr07:19268211..19268321CDS
IVF0025764.1-cdsIVF0025764.1-cds-chr07:19268431..19268453CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
IVF0025764.1IVF0025764.1-proteinpolypeptide