IVF0025210.1 (mRNA) Melon (IVF77) v1

Overview


Name	IVF0025210.1
Type	mRNA
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Plant transposase
Location	chr05: 10867024 .. 10867422 (-)
Sequence length	399
RNA-Seq Expression	IVF0025210.1
Synteny	IVF0025210.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTGCCAAAAGATATCTTCATTTTGATTTGAAAGCACCAAGAACGAGGTGTTCTAAGAAGGGCTTAAAATCTCCTTCAAGAGGGTTACAAACGAGTGAGAATGACTATTATGTCAAAGCGAGTGAAAAAGAAAGAGCTACCCTCACAATACCTGAAATTGAGCCACCGAATGATGGAGACAATCTTGATGGTACCCACACAACTCCGAGTTCACCTGTATCATTTGATTCACTAGCATCTCGTACAAGAGGAGCTCTTCAAAAGTTAGCTTTTAGAGGTCAAGTTTCACCAATTGTAGAGGTATCGCAAGAAGTAGGTGAGGATATAAATGAAGCTAAACCAAACGACACAACTCCGAGTTCACCTGTACCCACACAACTCCCAAAAAAAGCGTAA

mRNA sequence

ATGGGTGCCAAAAGATATCTTCATTTTGATTTGAAAGCACCAAGAACGAGGTGTTCTAAGAAGGGCTTAAAATCTCCTTCAAGAGGGTTACAAACGAGTGAGAATGACTATTATGTCAAAGCGAGTGAAAAAGAAAGAGCTACCCTCACAATACCTGAAATTGAGCCACCGAATGATGGAGACAATCTTGATGGTACCCACACAACTCCGAGTTCACCTGTATCATTTGATTCACTAGCATCTCGTACAAGAGGAGCTCTTCAAAAGTTAGCTTTTAGAGGTCAAGTTTCACCAATTGTAGAGGTATCGCAAGAAGTAGGTGAGGATATAAATGAAGCTAAACCAAACGACACAACTCCGAGTTCACCTGTACCCACACAACTCCCAAAAAAAGCGTAA

Coding sequence (CDS)

ATGGGTGCCAAAAGATATCTTCATTTTGATTTGAAAGCACCAAGAACGAGGTGTTCTAAGAAGGGCTTAAAATCTCCTTCAAGAGGGTTACAAACGAGTGAGAATGACTATTATGTCAAAGCGAGTGAAAAAGAAAGAGCTACCCTCACAATACCTGAAATTGAGCCACCGAATGATGGAGACAATCTTGATGGTACCCACACAACTCCGAGTTCACCTGTATCATTTGATTCACTAGCATCTCGTACAAGAGGAGCTCTTCAAAAGTTAGCTTTTAGAGGTCAAGTTTCACCAATTGTAGAGGTATCGCAAGAAGTAGGTGAGGATATAAATGAAGCTAAACCAAACGACACAACTCCGAGTTCACCTGTACCCACACAACTCCCAAAAAAAGCGTAA

Protein sequence

MGAKRYLHFDLKAPRTRCSKKGLKSPSRGLQTSENDYYVKASEKERATLTIPEIEPPNDGDNLDGTHTTPSSPVSFDSLASRTRGALQKLAFRGQVSPIVEVSQEVGEDINEAKPNDTTPSSPVPTQLPKKA

Homology

[Close]

BLAST of IVF0025210.1 vs. ExPASy TrEMBL
Match: A0A5A7SMV8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1159G00280 PE=4 SV=1)

HSP 1 Score: 261.2 bits (666), Expect = 2.4e-66
Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 0


Query: 1   MGAKRYLHFDLKAPRTRCSKKGLKSPSRGLQTSENDYYVKASEKERATLTIPEIEPPNDG 60
           MGAKRYLHFDLKAPRTRCSKKGLKSPSRGLQTSENDYYVKASEKERATLTIPEIEPPNDG
Sbjct: 1   MGAKRYLHFDLKAPRTRCSKKGLKSPSRGLQTSENDYYVKASEKERATLTIPEIEPPNDG 60

Query: 61  DNLDGTHTTPSSPVSFDSLASRTRGALQKLAFRGQVSPIVEVSQEVGEDINEAKPNDTTP 120
           DNLDGTHTTPSSPVSFDSLASRTRGALQKLAFRGQVSPIVEVSQEVGEDINEAKPNDTTP
Sbjct: 61  DNLDGTHTTPSSPVSFDSLASRTRGALQKLAFRGQVSPIVEVSQEVGEDINEAKPNDTTP 120

Query: 121 SSPVPTQLPKKA 133
           SSPVPTQLPKKA
Sbjct: 121 SSPVPTQLPKKA 132

[Close]

BLAST of IVF0025210.1 vs. ExPASy TrEMBL
Match: A0A5D3DFZ8 (Transposase_23 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold19523G00010 PE=4 SV=1)

HSP 1 Score: 200.7 bits (509), Expect = 3.9e-48
Identity = 106/129 (82.17%), Postives = 112/129 (86.82%), Query Frame = 0


Query: 3   AKRYLHFDLKAPRTRCSKKGLKSPSRGLQTSENDYYVKASEKERATLTIPEIEPPNDGDN 62
           AKR LHFD KAPR R SKK LKSPSRGL  +END  VKASEKE ATLTIPE EPPNDGDN
Sbjct: 10  AKRCLHFDSKAPRKRRSKKSLKSPSRGLPRTENDDSVKASEKEGATLTIPETEPPNDGDN 69

Query: 63  LDGTHTTPSSPVSFDSLASRTRGALQKLAFRGQVSPIVEVSQEVGEDINEAKPNDTTPSS 122
           LDGTHTTPSSPV FDS ASRTRGALQ+LA +G VSPIVEVSQ VGED+NE++PN TTPSS
Sbjct: 70  LDGTHTTPSSPVPFDSPASRTRGALQRLASKGVVSPIVEVSQGVGEDLNESEPNHTTPSS 129

Query: 123 PVPTQLPKK 132
           PVPTQLPKK
Sbjct: 130 PVPTQLPKK 138

[Close]

BLAST of IVF0025210.1 vs. ExPASy TrEMBL
Match: A0A5D3DEJ8 (Plant transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold543G00110 PE=4 SV=1)

HSP 1 Score: 200.7 bits (509), Expect = 3.9e-48
Identity = 106/129 (82.17%), Postives = 112/129 (86.82%), Query Frame = 0


Query: 3   AKRYLHFDLKAPRTRCSKKGLKSPSRGLQTSENDYYVKASEKERATLTIPEIEPPNDGDN 62
           AKR LHFD KAPR R SKK LKSPSRGL  +END  VKASEKE ATLTIPE EPPNDGDN
Sbjct: 10  AKRCLHFDSKAPRKRRSKKSLKSPSRGLPRTENDDSVKASEKEGATLTIPETEPPNDGDN 69

Query: 63  LDGTHTTPSSPVSFDSLASRTRGALQKLAFRGQVSPIVEVSQEVGEDINEAKPNDTTPSS 122
           LDGTHTTPSSPV FDS ASRTRGALQ+LA +G VSPIVEVSQ VGED+NE++PN TTPSS
Sbjct: 70  LDGTHTTPSSPVPFDSPASRTRGALQRLASKGVVSPIVEVSQGVGEDLNESEPNHTTPSS 129

Query: 123 PVPTQLPKK 132
           PVPTQLPKK
Sbjct: 130 PVPTQLPKK 138

[Close]

BLAST of IVF0025210.1 vs. ExPASy TrEMBL
Match: A0A5D3BM96 (Plant transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1112G00630 PE=4 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 6.2e-46
Identity = 103/129 (79.84%), Postives = 110/129 (85.27%), Query Frame = 0


Query: 3   AKRYLHFDLKAPRTRCSKKGLKSPSRGLQTSENDYYVKASEKERATLTIPEIEPPNDGDN 62
           AKR LHFD KAPR R SKK LKSPSRGL  +END  +KASEKE ATLTIPE EPPNDGDN
Sbjct: 10  AKRCLHFDSKAPRKRRSKKSLKSPSRGLPRTENDDSIKASEKEGATLTIPETEPPNDGDN 69

Query: 63  LDGTHTTPSSPVSFDSLASRTRGALQKLAFRGQVSPIVEVSQEVGEDINEAKPNDTTPSS 122
           LDGTHTTPSSPV FDS ASRT GALQ+LA +G VSPIVEVSQ VG+D+NEA+PN TT SS
Sbjct: 70  LDGTHTTPSSPVPFDSPASRTGGALQRLASKGVVSPIVEVSQGVGKDLNEAEPNHTTLSS 129

Query: 123 PVPTQLPKK 132
           PVPTQLPKK
Sbjct: 130 PVPTQLPKK 138

[Close]

BLAST of IVF0025210.1 vs. ExPASy TrEMBL
Match: A0A5A7SMK7 (Transpos_assoc domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold417G00730 PE=4 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 6.2e-46
Identity = 103/129 (79.84%), Postives = 110/129 (85.27%), Query Frame = 0


Query: 3   AKRYLHFDLKAPRTRCSKKGLKSPSRGLQTSENDYYVKASEKERATLTIPEIEPPNDGDN 62
           AKR LHFD KAPR R SKK LKSPSRGL  +END  +KASEKE ATLTIPE EPPNDGDN
Sbjct: 438 AKRCLHFDSKAPRKRRSKKSLKSPSRGLPRTENDDSIKASEKEGATLTIPETEPPNDGDN 497

Query: 63  LDGTHTTPSSPVSFDSLASRTRGALQKLAFRGQVSPIVEVSQEVGEDINEAKPNDTTPSS 122
           LDGTHTTPSSPV FDS ASRT GALQ+LA +G VSPIVEVSQ VG+D+NEA+PN TT SS
Sbjct: 498 LDGTHTTPSSPVPFDSPASRTGGALQRLASKGVVSPIVEVSQGVGKDLNEAEPNHTTLSS 557

Query: 123 PVPTQLPKK 132
           PVPTQLPKK
Sbjct: 558 PVPTQLPKK 566

[Close]

BLAST of IVF0025210.1 vs. NCBI nr
Match: KAA0032382.1 (hypothetical protein E6C27_scaffold219G002540 [Cucumis melo var. makuwa] >TYJ96366.1 hypothetical protein E5676_scaffold1159G00280 [Cucumis melo var. makuwa])

HSP 1 Score: 260 bits (664), Expect = 2.44e-87
Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 0


Query: 1   MGAKRYLHFDLKAPRTRCSKKGLKSPSRGLQTSENDYYVKASEKERATLTIPEIEPPNDG 60
           MGAKRYLHFDLKAPRTRCSKKGLKSPSRGLQTSENDYYVKASEKERATLTIPEIEPPNDG
Sbjct: 1   MGAKRYLHFDLKAPRTRCSKKGLKSPSRGLQTSENDYYVKASEKERATLTIPEIEPPNDG 60

Query: 61  DNLDGTHTTPSSPVSFDSLASRTRGALQKLAFRGQVSPIVEVSQEVGEDINEAKPNDTTP 120
           DNLDGTHTTPSSPVSFDSLASRTRGALQKLAFRGQVSPIVEVSQEVGEDINEAKPNDTTP
Sbjct: 61  DNLDGTHTTPSSPVSFDSLASRTRGALQKLAFRGQVSPIVEVSQEVGEDINEAKPNDTTP 120

Query: 121 SSPVPTQLPKKA 132
           SSPVPTQLPKKA
Sbjct: 121 SSPVPTQLPKKA 132

[Close]

BLAST of IVF0025210.1 vs. NCBI nr
Match: TYK22475.1 (hypothetical protein E5676_scaffold19523G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 200 bits (508), Expect = 1.64e-60
Identity = 106/129 (82.17%), Postives = 112/129 (86.82%), Query Frame = 0


Query: 3   AKRYLHFDLKAPRTRCSKKGLKSPSRGLQTSENDYYVKASEKERATLTIPEIEPPNDGDN 62
           AKR LHFD KAPR R SKK LKSPSRGL  +END  VKASEKE ATLTIPE EPPNDGDN
Sbjct: 10  AKRCLHFDSKAPRKRRSKKSLKSPSRGLPRTENDDSVKASEKEGATLTIPETEPPNDGDN 69

Query: 63  LDGTHTTPSSPVSFDSLASRTRGALQKLAFRGQVSPIVEVSQEVGEDINEAKPNDTTPSS 122
           LDGTHTTPSSPV FDS ASRTRGALQ+LA +G VSPIVEVSQ VGED+NE++PN TTPSS
Sbjct: 70  LDGTHTTPSSPVPFDSPASRTRGALQRLASKGVVSPIVEVSQGVGEDLNESEPNHTTPSS 129

Query: 123 PVPTQLPKK 131
           PVPTQLPKK
Sbjct: 130 PVPTQLPKK 138

[Close]

BLAST of IVF0025210.1 vs. NCBI nr
Match: ADN34160.1 (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 189 bits (479), Expect = 4.29e-59
Identity = 101/125 (80.80%), Postives = 106/125 (84.80%), Query Frame = 0


Query: 1   MGAKRYLHFDLKAPRTRCSKKGLKSPSRGLQTSENDYYVKASEKERATLTIPEIEPPNDG 60
           M AKR LHFD KAPR R SKKGLKSPSRGLQT END YVKASEKE ATLT PE +PPNDG
Sbjct: 8   MVAKRCLHFDSKAPRKRLSKKGLKSPSRGLQTGENDDYVKASEKEGATLTKPETKPPNDG 67

Query: 61  DNLDGTHTTPSSPVSFDSLASRTRGALQKLAFRGQVSPIVEVSQEVGEDINEAKPNDTTP 120
           DNLDGTHTTPSSP+ FDS AS TRGALQ+LA +GQVSPIVEVSQE  EDINE +PN TT 
Sbjct: 68  DNLDGTHTTPSSPIPFDSPASCTRGALQRLASKGQVSPIVEVSQEECEDINEVEPNHTTL 127

Query: 121 SSPVP 125
           SSPVP
Sbjct: 128 SSPVP 132

[Close]

BLAST of IVF0025210.1 vs. NCBI nr
Match: TYK21965.1 (Plant transposase [Cucumis melo var. makuwa])

HSP 1 Score: 200 bits (508), Expect = 1.50e-58
Identity = 106/129 (82.17%), Postives = 112/129 (86.82%), Query Frame = 0


Query: 3   AKRYLHFDLKAPRTRCSKKGLKSPSRGLQTSENDYYVKASEKERATLTIPEIEPPNDGDN 62
           AKR LHFD KAPR R SKK LKSPSRGL  +END  VKASEKE ATLTIPE EPPNDGDN
Sbjct: 10  AKRCLHFDSKAPRKRRSKKSLKSPSRGLPRTENDDSVKASEKEGATLTIPETEPPNDGDN 69

Query: 63  LDGTHTTPSSPVSFDSLASRTRGALQKLAFRGQVSPIVEVSQEVGEDINEAKPNDTTPSS 122
           LDGTHTTPSSPV FDS ASRTRGALQ+LA +G VSPIVEVSQ VGED+NE++PN TTPSS
Sbjct: 70  LDGTHTTPSSPVPFDSPASRTRGALQRLASKGVVSPIVEVSQGVGEDLNESEPNHTTPSS 129

Query: 123 PVPTQLPKK 131
           PVPTQLPKK
Sbjct: 130 PVPTQLPKK 138

[Close]

BLAST of IVF0025210.1 vs. NCBI nr
Match: TYK00394.1 (Plant transposase [Cucumis melo var. makuwa])

HSP 1 Score: 192 bits (489), Expect = 1.76e-56
Identity = 103/129 (79.84%), Postives = 110/129 (85.27%), Query Frame = 0


Query: 3   AKRYLHFDLKAPRTRCSKKGLKSPSRGLQTSENDYYVKASEKERATLTIPEIEPPNDGDN 62
           AKR LHFD KAPR R SKK LKSPSRGL  +END  +KASEKE ATLTIPE EPPNDGDN
Sbjct: 10  AKRCLHFDSKAPRKRRSKKSLKSPSRGLPRTENDDSIKASEKEGATLTIPETEPPNDGDN 69

Query: 63  LDGTHTTPSSPVSFDSLASRTRGALQKLAFRGQVSPIVEVSQEVGEDINEAKPNDTTPSS 122
           LDGTHTTPSSPV FDS ASRT GALQ+LA +G VSPIVEVSQ VG+D+NEA+PN TT SS
Sbjct: 70  LDGTHTTPSSPVPFDSPASRTGGALQRLASKGVVSPIVEVSQGVGKDLNEAEPNHTTLSS 129

Query: 123 PVPTQLPKK 131
           PVPTQLPKK
Sbjct: 130 PVPTQLPKK 138

The following BLAST results are available for this feature:

BLAST of IVF0025210.1 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0025210.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SMV8	2.4e-66	100.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3DFZ8	3.9e-48	82.17	Transposase_23 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5D3DEJ8	3.9e-48	82.17	Plant transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold543G00...	[more]
A0A5D3BM96	6.2e-46	79.84	Plant transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1112G0...	[more]
A0A5A7SMK7	6.2e-46	79.84	Transpos_assoc domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]

BLAST of IVF0025210.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0032382.1	2.44e-87	100.00	hypothetical protein E6C27_scaffold219G002540 [Cucumis melo var. makuwa] >TYJ963...	[more]
TYK22475.1	1.64e-60	82.17	hypothetical protein E5676_scaffold19523G00010 [Cucumis melo var. makuwa]	[more]
ADN34160.1	4.29e-59	80.80	hypothetical protein [Cucumis melo subsp. melo]	[more]
TYK21965.1	1.50e-58	82.17	Plant transposase [Cucumis melo var. makuwa]	[more]
TYK00394.1	1.76e-56	79.84	Plant transposase [Cucumis melo var. makuwa]	[more]

BLAST of IVF0025210.1 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 93..132
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 62..77
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 47..77

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
IVF0025210	IVF0025210	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0025210.1-exon	IVF0025210.1-exon-chr05:10867024..10867422	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0025210.1-cds	IVF0025210.1-cds-chr05:10867024..10867422	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
IVF0025210.1	IVF0025210.1-protein	polypeptide