IVF0025009.4 (mRNA) Melon (IVF77) v1

Overview


Name	IVF0025009.4
Type	mRNA
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	U11/U12 small nuclear ribonucleoprotein 25 kDa protein
Location	chr07: 518346 .. 519884 (-)
Sequence length	1086
RNA-Seq Expression	IVF0025009.4
Synteny	IVF0025009.4

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ACTCTAACTCGAAGACAACCCCTCTATTTCCTTCTCCATCCCTCTTTTGAGTCCACCTCTCTTTCCTCTTCCTCCAAACACCCACGTCACTGGCGGCGACGCCTGCTGTTGCAGATCAGGCGGCGTGAACTGAGTCCGGCCGAGACGGTGGTTACCCAAACGGCAGTCACCTACCGGGAGCCCTGCAGCGAATTGTCAGCTTCGCAACCTCCGTGAACAGTCTGGTCATTTTTCCCATTTAAGGTGAGGTTTAATATTTTAGTCTTCGATTGATTTGTGTAAGAATTTTTTCGAAATTTGTTGTTTGGGATTTCAAATATTTTGTTTAAATAACCTTTGGAAGTAGAATAGTCTGCTGAGTGAAATGTTTTGTTTGGGTCTCAATAAAATAATTTGGAAGCAAAATTGTGTAGCAATGAAGGAAAACGGAGATGGATCAATGAAATCCATGAGTAAAGATGAAGAGAATGTGGTAGGTTACCACAGCAACAACGTAAAAAAAGTTAGGTTAAATTCAACTCTCGCTGCTCTGCTTGACGATCCTATTCTCGCCGATGTCCCCAAAAATCCCACCCTATCGCACGTCGACACTCTCATCAGCCTCGAATTGGGAAGCGCCATGCGTATCTCCGTTCTTAAGCTCGATGGCACTGCCATTGGTACACACGTTTTCCTAATGTTCCCTTCTCTTTCTCTGTCTGGCATTTTCACAAACACCTTGTTATATGAACAACTGAAACTCAATTCACCATCTTGTTCTTTGTTTAGATGTGCTGATCATGAATTCTGCGACATTGAAAGACTTGAAGCTTGCAATCAAGCAGAAAGTAAACGAGACGGAACAATCCAAGATGGGGCATCGCCACATTTCATGGTACTCTTTCTTGATAGCTCTCTAACCCAATCATTCAATGATCGCTGTTCATTGATTACAATTCCTTCGCTTTTGGATTTGCAGGAAACACGTATGGGCAAATTTTTGCTTAGCACACCACAACGAGAAGATTCTTGATGATAGCTCAGTACTTCAGGATTTTGGAATCCGTAACAATTCTCAGGTTGGATTTTTAGTAGAGTTGGAAGTATTTGAAATTTATCTGAGTTGAATCATTCAATCATTATATACAATGAACAAAAACTTGTTGCAGGTGCGTTTTATCCCATACGTTATGTCAAAGAACTCCAGAACACATTCTAGGAGGAGAAAACACCGATTCTTTCATGGTCTCAACAAATGTGCTTGAGCTTCCAGATGCTTTGGAGGATGTTTCTCTTCAACACAAATTCAGTAAGCTTGAGTTCCATTACAATTTTTGTAACTGAATATGAACTTTAGATGAATGTGTTTATAGGAACTTGACCCTTCCATGTACATTTAACATTATGATATGTAAAAATGCAAACTAATATCTACATGATTAGCAAATTTTTGTTGTTTGTGGAAATTTGGTTAATTTAAGTGGAAAATTGAATCAAGCTATTCCTTCCCAACCCCAACAACAAAAGGATCTTTACTTTATCTCATAAACTTGTTCTCAT

mRNA sequence

ACTCTAACTCGAAGACAACCCCTCTATTTCCTTCTCCATCCCTCTTTTGAGTCCACCTCTCTTTCCTCTTCCTCCAAACACCCACGTCACTGGCGGCGACGCCTGCTGTTGCAGATCAGGCGGCGTGAACTGAGTCCGGCCGAGACGGTGGTTACCCAAACGGCAGTCACCTACCGGGAGCCCTGCAGCGAATTGTCAGCTTCGCAACCTCCGTGAACAGTCTGGTCATTTTTCCCATTTAAGCAATGAAGGAAAACGGAGATGGATCAATGAAATCCATGAGTAAAGATGAAGAGAATGTGGTAGGTTACCACAGCAACAACGTAAAAAAAGTTAGGTTAAATTCAACTCTCGCTGCTCTGCTTGACGATCCTATTCTCGCCGATGTCCCCAAAAATCCCACCCTATCGCACGTCGACACTCTCATCAGCCTCGAATTGGGAAGCGCCATGCGTATCTCCGTTCTTAAGCTCGATGGCACTGCCATTGATGTGCTGATCATGAATTCTGCGACATTGAAAGACTTGAAGCTTGCAATCAAGCAGAAAGTAAACGAGACGGAACAATCCAAGATGGGGCATCGCCACATTTCATGGAAACACGTATGGGCAAATTTTTGCTTAGCACACCACAACGAGAAGATTCTTGATGATAGCTCAGTACTTCAGGATTTTGGAATCCGTAACAATTCTCAGGTGCGTTTTATCCCATACGTTATGTCAAAGAACTCCAGAACACATTCTAGGAGGAGAAAACACCGATTCTTTCATGGTCTCAACAAATGTGCTTGAGCTTCCAGATGCTTTGGAGGATGTTTCTCTTCAACACAAATTCAGTAAGCTTGAGTTCCATTACAATTTTTGTAACTGAATATGAACTTTAGATGAATGTGTTTATAGGAACTTGACCCTTCCATGTACATTTAACATTATGATATGTAAAAATGCAAACTAATATCTACATGATTAGCAAATTTTTGTTGTTTGTGGAAATTTGGTTAATTTAAGTGGAAAATTGAATCAAGCTATTCCTTCCCAACCCCAACAACAAAAGGATCTTTACTTTATCTCATAAACTTGTTCTCAT

Coding sequence (CDS)

ATGAAGGAAAACGGAGATGGATCAATGAAATCCATGAGTAAAGATGAAGAGAATGTGGTAGGTTACCACAGCAACAACGTAAAAAAAGTTAGGTTAAATTCAACTCTCGCTGCTCTGCTTGACGATCCTATTCTCGCCGATGTCCCCAAAAATCCCACCCTATCGCACGTCGACACTCTCATCAGCCTCGAATTGGGAAGCGCCATGCGTATCTCCGTTCTTAAGCTCGATGGCACTGCCATTGATGTGCTGATCATGAATTCTGCGACATTGAAAGACTTGAAGCTTGCAATCAAGCAGAAAGTAAACGAGACGGAACAATCCAAGATGGGGCATCGCCACATTTCATGGAAACACGTATGGGCAAATTTTTGCTTAGCACACCACAACGAGAAGATTCTTGATGATAGCTCAGTACTTCAGGATTTTGGAATCCGTAACAATTCTCAGGTGCGTTTTATCCCATACGTTATGTCAAAGAACTCCAGAACACATTCTAGGAGGAGAAAACACCGATTCTTTCATGGTCTCAACAAATGTGCTTGA

Protein sequence

MKENGDGSMKSMSKDEENVVGYHSNNVKKVRLNSTLAALLDDPILADVPKNPTLSHVDTLISLELGSAMRISVLKLDGTAIDVLIMNSATLKDLKLAIKQKVNETEQSKMGHRHISWKHVWANFCLAHHNEKILDDSSVLQDFGIRNNSQVRFIPYVMSKNSRTHSRRRKHRFFHGLNKCA

Homology

[Close]

BLAST of IVF0025009.4 vs. ExPASy Swiss-Prot
Match: Q84WS8 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Arabidopsis thaliana OX=3702 GN=SNRNP25 PE=2 SV=1)

HSP 1 Score: 216.5 bits (550), Expect = 2.5e-55
Identity = 107/159 (67.30%), Postives = 131/159 (82.39%), Query Frame = 0


Query: 21  GYHSNNVKKVRLNSTLAALLDDPILADVPKNPTLSHVDTLISLELGSAMRISVLKLDGTA 80
           G +    K+ +L S L+ LL DPILADVP+NPTLS V TL+SLE GSAMR+SV+KLDG++
Sbjct: 4   GDYDVETKREKLKSVLSQLLADPILADVPRNPTLSDVVTLVSLEKGSAMRLSVVKLDGSS 63

Query: 81  IDVLIMNSATLKDLKLAIKQKVNETEQSKMGHRHISWKHVWANFCLAHHNEKILDDSSVL 140
           +DV +MNSATLKDLKL IK+KVNE EQ+ MGHRHISWKHVW+NFCL+ +NEK+LDD++VL
Sbjct: 64  LDVAVMNSATLKDLKLLIKKKVNEMEQANMGHRHISWKHVWSNFCLSCNNEKLLDDNAVL 123

Query: 141 QDFGIRNNSQVRFIPYVMSKNSRTHSRRRKHRFFHGLNK 180
           QD GIRNNSQV F+PYVM K    HS+R+KHR F  L+K
Sbjct: 124 QDVGIRNNSQVTFMPYVMKKGRGRHSKRKKHRLFRSLHK 162

[Close]

BLAST of IVF0025009.4 vs. ExPASy Swiss-Prot
Match: Q9BV90 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Homo sapiens OX=9606 GN=SNRNP25 PE=1 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 9.1e-21
Identity = 51/125 (40.80%), Postives = 79/125 (63.20%), Query Frame = 0


Query: 36  LAALLDDPILADVPKNPTLSHVDTLISLELGSAMRISVLKLDGTAIDVLIMNSATLKDLK 95
           LA ++ DP+L D+P   TL  V++ I+LE G AM + V K+DG  + V+++ SAT+ DLK
Sbjct: 8   LAMVVQDPLLCDLPIQVTLEEVNSQIALEYGQAMTVRVCKMDGEVMPVVVVQSATVLDLK 67

Query: 96  LAIKQKVNETEQSKMGHRHISWKHVWANFCLAHHNEKILDDSSVLQDFGIRNNSQVRFIP 155
            AI++ V   ++ + G +HISW +VW  + L    EK+ +D   L+D+GIRN  +V FI 
Sbjct: 68  KAIQRYVQLKQEREGGIQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYGIRNRDEVSFIK 127

Query: 156 YVMSK 161
            +  K
Sbjct: 128 KLRQK 132

[Close]

BLAST of IVF0025009.4 vs. ExPASy Swiss-Prot
Match: Q3ZBQ4 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Bos taurus OX=9913 GN=SNRNP25 PE=2 SV=2)

HSP 1 Score: 97.8 bits (242), Expect = 1.3e-19
Identity = 48/122 (39.34%), Postives = 77/122 (63.11%), Query Frame = 0


Query: 39  LLDDPILADVPKNPTLSHVDTLISLELGSAMRISVLKLDGTAIDVLIMNSATLKDLKLAI 98
           ++ DP+L D+P   TL  V++ I+LE G AM + V K+DG  + V+++ +AT+ DLK AI
Sbjct: 2   VVQDPLLCDLPIQVTLEEVNSQIALEYGQAMTVRVCKMDGEVMPVVVVQNATVLDLKKAI 61

Query: 99  KQKVNETEQSKMGHRHISWKHVWANFCLAHHNEKILDDSSVLQDFGIRNNSQVRFIPYVM 158
           ++ V   ++ + G +HISW +VW  + L    EK+ +D   L+D+GIRN  +V FI  + 
Sbjct: 62  QRYVQLRQEREGGIQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYGIRNRDEVSFIKKLR 121

Query: 159 SK 161
            K
Sbjct: 122 QK 123

[Close]

BLAST of IVF0025009.4 vs. ExPASy Swiss-Prot
Match: Q8VIK1 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Mus musculus OX=10090 GN=Snrnp25 PE=1 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 1.3e-19
Identity = 48/122 (39.34%), Postives = 77/122 (63.11%), Query Frame = 0


Query: 39  LLDDPILADVPKNPTLSHVDTLISLELGSAMRISVLKLDGTAIDVLIMNSATLKDLKLAI 98
           ++ DP+L D+P   TL  V++ I+LE G AM + V K+DG  + V+++ +AT+ DLK AI
Sbjct: 2   VVQDPLLCDLPIQVTLEEVNSQIALEYGQAMTVRVCKMDGEVMPVVVVQNATVLDLKKAI 61

Query: 99  KQKVNETEQSKMGHRHISWKHVWANFCLAHHNEKILDDSSVLQDFGIRNNSQVRFIPYVM 158
           ++ V   ++ + G +HISW +VW  + L    EK+ +D   L+D+GIRN  +V FI  + 
Sbjct: 62  QRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYGIRNRDEVSFIKKLR 121

Query: 159 SK 161
            K
Sbjct: 122 QK 123

[Close]

BLAST of IVF0025009.4 vs. ExPASy TrEMBL
Match: A0A5A7VCB2 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G00890 PE=4 SV=1)

HSP 1 Score: 356.7 bits (914), Expect = 5.8e-95
Identity = 181/181 (100.00%), Postives = 181/181 (100.00%), Query Frame = 0


Query: 1   MKENGDGSMKSMSKDEENVVGYHSNNVKKVRLNSTLAALLDDPILADVPKNPTLSHVDTL 60
           MKENGDGSMKSMSKDEENVVGYHSNNVKKVRLNSTLAALLDDPILADVPKNPTLSHVDTL
Sbjct: 1   MKENGDGSMKSMSKDEENVVGYHSNNVKKVRLNSTLAALLDDPILADVPKNPTLSHVDTL 60

Query: 61  ISLELGSAMRISVLKLDGTAIDVLIMNSATLKDLKLAIKQKVNETEQSKMGHRHISWKHV 120
           ISLELGSAMRISVLKLDGTAIDVLIMNSATLKDLKLAIKQKVNETEQSKMGHRHISWKHV
Sbjct: 61  ISLELGSAMRISVLKLDGTAIDVLIMNSATLKDLKLAIKQKVNETEQSKMGHRHISWKHV 120

Query: 121 WANFCLAHHNEKILDDSSVLQDFGIRNNSQVRFIPYVMSKNSRTHSRRRKHRFFHGLNKC 180
           WANFCLAHHNEKILDDSSVLQDFGIRNNSQVRFIPYVMSKNSRTHSRRRKHRFFHGLNKC
Sbjct: 121 WANFCLAHHNEKILDDSSVLQDFGIRNNSQVRFIPYVMSKNSRTHSRRRKHRFFHGLNKC 180

Query: 181 A 182
           A
Sbjct: 181 A 181

[Close]

BLAST of IVF0025009.4 vs. ExPASy TrEMBL
Match: E5GCC9 (Ubiquitin_4 domain-containing protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 356.7 bits (914), Expect = 5.8e-95
Identity = 181/181 (100.00%), Postives = 181/181 (100.00%), Query Frame = 0


Query: 1   MKENGDGSMKSMSKDEENVVGYHSNNVKKVRLNSTLAALLDDPILADVPKNPTLSHVDTL 60
           MKENGDGSMKSMSKDEENVVGYHSNNVKKVRLNSTLAALLDDPILADVPKNPTLSHVDTL
Sbjct: 1   MKENGDGSMKSMSKDEENVVGYHSNNVKKVRLNSTLAALLDDPILADVPKNPTLSHVDTL 60

Query: 61  ISLELGSAMRISVLKLDGTAIDVLIMNSATLKDLKLAIKQKVNETEQSKMGHRHISWKHV 120
           ISLELGSAMRISVLKLDGTAIDVLIMNSATLKDLKLAIKQKVNETEQSKMGHRHISWKHV
Sbjct: 61  ISLELGSAMRISVLKLDGTAIDVLIMNSATLKDLKLAIKQKVNETEQSKMGHRHISWKHV 120

Query: 121 WANFCLAHHNEKILDDSSVLQDFGIRNNSQVRFIPYVMSKNSRTHSRRRKHRFFHGLNKC 180
           WANFCLAHHNEKILDDSSVLQDFGIRNNSQVRFIPYVMSKNSRTHSRRRKHRFFHGLNKC
Sbjct: 121 WANFCLAHHNEKILDDSSVLQDFGIRNNSQVRFIPYVMSKNSRTHSRRRKHRFFHGLNKC 180

Query: 181 A 182
           A
Sbjct: 181 A 181

[Close]

BLAST of IVF0025009.4 vs. ExPASy TrEMBL
Match: A0A1S3BW55 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Cucumis melo OX=3656 GN=LOC103493787 PE=4 SV=1)

HSP 1 Score: 356.7 bits (914), Expect = 5.8e-95
Identity = 181/181 (100.00%), Postives = 181/181 (100.00%), Query Frame = 0


Query: 1   MKENGDGSMKSMSKDEENVVGYHSNNVKKVRLNSTLAALLDDPILADVPKNPTLSHVDTL 60
           MKENGDGSMKSMSKDEENVVGYHSNNVKKVRLNSTLAALLDDPILADVPKNPTLSHVDTL
Sbjct: 1   MKENGDGSMKSMSKDEENVVGYHSNNVKKVRLNSTLAALLDDPILADVPKNPTLSHVDTL 60

Query: 61  ISLELGSAMRISVLKLDGTAIDVLIMNSATLKDLKLAIKQKVNETEQSKMGHRHISWKHV 120
           ISLELGSAMRISVLKLDGTAIDVLIMNSATLKDLKLAIKQKVNETEQSKMGHRHISWKHV
Sbjct: 61  ISLELGSAMRISVLKLDGTAIDVLIMNSATLKDLKLAIKQKVNETEQSKMGHRHISWKHV 120

Query: 121 WANFCLAHHNEKILDDSSVLQDFGIRNNSQVRFIPYVMSKNSRTHSRRRKHRFFHGLNKC 180
           WANFCLAHHNEKILDDSSVLQDFGIRNNSQVRFIPYVMSKNSRTHSRRRKHRFFHGLNKC
Sbjct: 121 WANFCLAHHNEKILDDSSVLQDFGIRNNSQVRFIPYVMSKNSRTHSRRRKHRFFHGLNKC 180

Query: 181 A 182
           A
Sbjct: 181 A 181

[Close]

BLAST of IVF0025009.4 vs. ExPASy TrEMBL
Match: A0A0A0L4F3 (Ubiquitin_4 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G652840 PE=4 SV=1)

HSP 1 Score: 337.0 bits (863), Expect = 4.7e-89
Identity = 171/181 (94.48%), Postives = 176/181 (97.24%), Query Frame = 0


Query: 1   MKENGDGSMKSMSKDEENVVGYHSNNVKKVRLNSTLAALLDDPILADVPKNPTLSHVDTL 60
           MKE GDGSMKS+ KDEEN VGYHSNNVKKVRLNSTLAALLDDPILADVPKNPTLSHVDTL
Sbjct: 1   MKEEGDGSMKSIIKDEENAVGYHSNNVKKVRLNSTLAALLDDPILADVPKNPTLSHVDTL 60

Query: 61  ISLELGSAMRISVLKLDGTAIDVLIMNSATLKDLKLAIKQKVNETEQSKMGHRHISWKHV 120
           ISLELGSAMRISVLKLDGTAIDV+IMNSATLKDLKLAIK+KVNE EQSKMGHRHISWKHV
Sbjct: 61  ISLELGSAMRISVLKLDGTAIDVVIMNSATLKDLKLAIKKKVNEMEQSKMGHRHISWKHV 120

Query: 121 WANFCLAHHNEKILDDSSVLQDFGIRNNSQVRFIPYVMSKNSRTHSRRRKHRFFHGLNKC 180
           WANFCLAH NEK+LDDSSVLQDFGIRNNSQVRFIPYVMSK+SRTHSRRRKHRFFHGLNKC
Sbjct: 121 WANFCLAHLNEKLLDDSSVLQDFGIRNNSQVRFIPYVMSKSSRTHSRRRKHRFFHGLNKC 180

Query: 181 A 182
           A
Sbjct: 181 A 181

[Close]

BLAST of IVF0025009.4 vs. ExPASy TrEMBL
Match: A0A6J1IJC5 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111474833 PE=4 SV=1)

HSP 1 Score: 317.8 bits (813), Expect = 3.0e-83
Identity = 161/180 (89.44%), Postives = 167/180 (92.78%), Query Frame = 0


Query: 1   MKENGDGSMKSMSKDEENVVGYHSNNVKKVRLNSTLAALLDDPILADVPKNPTLSHVDTL 60
           MKE+GD S+KS SK+EENVVGYHS NVKKVRLNSTL ALLDDPILADVPK PTL  VDTL
Sbjct: 1   MKEDGDESLKSSSKEEENVVGYHSTNVKKVRLNSTLTALLDDPILADVPKKPTLLDVDTL 60

Query: 61  ISLELGSAMRISVLKLDGTAIDVLIMNSATLKDLKLAIKQKVNETEQSKMGHRHISWKHV 120
           ISLELGSAMRISVLKLDGT IDV IMNSA+LKDLKLAIK+KVNE EQSKMGHRHISWKHV
Sbjct: 61  ISLELGSAMRISVLKLDGTIIDVAIMNSASLKDLKLAIKKKVNEMEQSKMGHRHISWKHV 120

Query: 121 WANFCLAHHNEKILDDSSVLQDFGIRNNSQVRFIPYVMSKNSRTHSRRRKHRFFHGLNKC 180
           WANFCLAHHNEKILDDSS LQDFGIRNNSQV F+PYVMSKNSR HSRRRKHRFFHGLNKC
Sbjct: 121 WANFCLAHHNEKILDDSSALQDFGIRNNSQVHFVPYVMSKNSRRHSRRRKHRFFHGLNKC 180

[Close]

BLAST of IVF0025009.4 vs. NCBI nr
Match: XP_008452908.1 (PREDICTED: U11/U12 small nuclear ribonucleoprotein 25 kDa protein [Cucumis melo] >ADN34128.1 hypothetical protein [Cucumis melo subsp. melo] >KAA0064617.1 U11/U12 small nuclear ribonucleoprotein 25 kDa protein [Cucumis melo var. makuwa] >TYK19975.1 U11/U12 small nuclear ribonucleoprotein 25 kDa protein [Cucumis melo var. makuwa])

HSP 1 Score: 355 bits (910), Expect = 2.99e-123
Identity = 181/181 (100.00%), Postives = 181/181 (100.00%), Query Frame = 0


Query: 1   MKENGDGSMKSMSKDEENVVGYHSNNVKKVRLNSTLAALLDDPILADVPKNPTLSHVDTL 60
           MKENGDGSMKSMSKDEENVVGYHSNNVKKVRLNSTLAALLDDPILADVPKNPTLSHVDTL
Sbjct: 1   MKENGDGSMKSMSKDEENVVGYHSNNVKKVRLNSTLAALLDDPILADVPKNPTLSHVDTL 60

Query: 61  ISLELGSAMRISVLKLDGTAIDVLIMNSATLKDLKLAIKQKVNETEQSKMGHRHISWKHV 120
           ISLELGSAMRISVLKLDGTAIDVLIMNSATLKDLKLAIKQKVNETEQSKMGHRHISWKHV
Sbjct: 61  ISLELGSAMRISVLKLDGTAIDVLIMNSATLKDLKLAIKQKVNETEQSKMGHRHISWKHV 120

Query: 121 WANFCLAHHNEKILDDSSVLQDFGIRNNSQVRFIPYVMSKNSRTHSRRRKHRFFHGLNKC 180
           WANFCLAHHNEKILDDSSVLQDFGIRNNSQVRFIPYVMSKNSRTHSRRRKHRFFHGLNKC
Sbjct: 121 WANFCLAHHNEKILDDSSVLQDFGIRNNSQVRFIPYVMSKNSRTHSRRRKHRFFHGLNKC 180

[Close]

BLAST of IVF0025009.4 vs. NCBI nr
Match: XP_004145525.1 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein [Cucumis sativus] >XP_011654244.1 U11/U12 small nuclear ribonucleoprotein 25 kDa protein [Cucumis sativus] >XP_031740761.1 U11/U12 small nuclear ribonucleoprotein 25 kDa protein [Cucumis sativus] >KGN55472.1 hypothetical protein Csa_012465 [Cucumis sativus])

HSP 1 Score: 335 bits (859), Expect = 1.79e-115
Identity = 171/181 (94.48%), Postives = 176/181 (97.24%), Query Frame = 0


Query: 1   MKENGDGSMKSMSKDEENVVGYHSNNVKKVRLNSTLAALLDDPILADVPKNPTLSHVDTL 60
           MKE GDGSMKS+ KDEEN VGYHSNNVKKVRLNSTLAALLDDPILADVPKNPTLSHVDTL
Sbjct: 1   MKEEGDGSMKSIIKDEENAVGYHSNNVKKVRLNSTLAALLDDPILADVPKNPTLSHVDTL 60

Query: 61  ISLELGSAMRISVLKLDGTAIDVLIMNSATLKDLKLAIKQKVNETEQSKMGHRHISWKHV 120
           ISLELGSAMRISVLKLDGTAIDV+IMNSATLKDLKLAIK+KVNE EQSKMGHRHISWKHV
Sbjct: 61  ISLELGSAMRISVLKLDGTAIDVVIMNSATLKDLKLAIKKKVNEMEQSKMGHRHISWKHV 120

Query: 121 WANFCLAHHNEKILDDSSVLQDFGIRNNSQVRFIPYVMSKNSRTHSRRRKHRFFHGLNKC 180
           WANFCLAH NEK+LDDSSVLQDFGIRNNSQVRFIPYVMSK+SRTHSRRRKHRFFHGLNKC
Sbjct: 121 WANFCLAHLNEKLLDDSSVLQDFGIRNNSQVRFIPYVMSKSSRTHSRRRKHRFFHGLNKC 180

[Close]

BLAST of IVF0025009.4 vs. NCBI nr
Match: XP_038898960.1 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein [Benincasa hispida] >XP_038898961.1 U11/U12 small nuclear ribonucleoprotein 25 kDa protein [Benincasa hispida])

HSP 1 Score: 322 bits (825), Expect = 2.37e-110
Identity = 166/181 (91.71%), Postives = 171/181 (94.48%), Query Frame = 0


Query: 1   MKENGDGSMKSMSKDEENVVGYHSNNVKKVRLNSTLAALLDDPILADVPKNPTLSHVDTL 60
           MKE+GD S     KDEENVVGYHSNNVKKVRLNSTLAALLDDPILADVPKNPTLSHVDTL
Sbjct: 1   MKEDGDES----KKDEENVVGYHSNNVKKVRLNSTLAALLDDPILADVPKNPTLSHVDTL 60

Query: 61  ISLELGSAMRISVLKLDGTAIDVLIMNSATLKDLKLAIKQKVNETEQSKMGHRHISWKHV 120
           ISLELGSAMRISVLKLDGTAIDV IMNSATLKDLKLAIK+KVN+ EQSKMGHRHISWKHV
Sbjct: 61  ISLELGSAMRISVLKLDGTAIDVPIMNSATLKDLKLAIKKKVNDMEQSKMGHRHISWKHV 120

Query: 121 WANFCLAHHNEKILDDSSVLQDFGIRNNSQVRFIPYVMSKNSRTHSRRRKHRFFHGLNKC 180
           WANFCLAHHNEKILDD+SVLQDFGIRNNSQV F+PYVMSKNSR HSRRRKHRFFHGLNKC
Sbjct: 121 WANFCLAHHNEKILDDNSVLQDFGIRNNSQVHFVPYVMSKNSRRHSRRRKHRFFHGLNKC 177

[Close]

BLAST of IVF0025009.4 vs. NCBI nr
Match: XP_022975482.1 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein isoform X3 [Cucurbita maxima] >XP_022975488.1 U11/U12 small nuclear ribonucleoprotein 25 kDa protein isoform X3 [Cucurbita maxima] >XP_023535849.1 U11/U12 small nuclear ribonucleoprotein 25 kDa protein [Cucurbita pepo subsp. pepo] >XP_023535850.1 U11/U12 small nuclear ribonucleoprotein 25 kDa protein [Cucurbita pepo subsp. pepo] >XP_023535851.1 U11/U12 small nuclear ribonucleoprotein 25 kDa protein [Cucurbita pepo subsp. pepo] >XP_023535852.1 U11/U12 small nuclear ribonucleoprotein 25 kDa protein [Cucurbita pepo subsp. pepo] >XP_023535853.1 U11/U12 small nuclear ribonucleoprotein 25 kDa protein [Cucurbita pepo subsp. pepo] >XP_023535854.1 U11/U12 small nuclear ribonucleoprotein 25 kDa protein [Cucurbita pepo subsp. pepo])

HSP 1 Score: 316 bits (809), Expect = 7.48e-108
Identity = 161/181 (88.95%), Postives = 167/181 (92.27%), Query Frame = 0


Query: 1   MKENGDGSMKSMSKDEENVVGYHSNNVKKVRLNSTLAALLDDPILADVPKNPTLSHVDTL 60
           MKE+GD S+KS SK+EENVVGYHS NVKKVRLNSTL ALLDDPILADVPK PTL  VDTL
Sbjct: 1   MKEDGDESLKSSSKEEENVVGYHSTNVKKVRLNSTLTALLDDPILADVPKKPTLLDVDTL 60

Query: 61  ISLELGSAMRISVLKLDGTAIDVLIMNSATLKDLKLAIKQKVNETEQSKMGHRHISWKHV 120
           ISLELGSAMRISVLKLDGT IDV IMNSA+LKDLKLAIK+KVNE EQSKMGHRHISWKHV
Sbjct: 61  ISLELGSAMRISVLKLDGTIIDVAIMNSASLKDLKLAIKKKVNEMEQSKMGHRHISWKHV 120

Query: 121 WANFCLAHHNEKILDDSSVLQDFGIRNNSQVRFIPYVMSKNSRTHSRRRKHRFFHGLNKC 180
           WANFCLAHHNEKILDDSS LQDFGIRNNSQV F+PYVMSKNSR HSRRRKHRFFHGLNKC
Sbjct: 121 WANFCLAHHNEKILDDSSALQDFGIRNNSQVHFVPYVMSKNSRRHSRRRKHRFFHGLNKC 180

[Close]

BLAST of IVF0025009.4 vs. NCBI nr
Match: KAG6591246.1 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 316 bits (809), Expect = 1.14e-107
Identity = 161/181 (88.95%), Postives = 167/181 (92.27%), Query Frame = 0


Query: 1   MKENGDGSMKSMSKDEENVVGYHSNNVKKVRLNSTLAALLDDPILADVPKNPTLSHVDTL 60
           MKE+GD S+KS SK+EENVVGYHS NVKKVRLNSTL ALLDDPILADVPK PTL  VDTL
Sbjct: 13  MKEDGDESLKSSSKEEENVVGYHSTNVKKVRLNSTLTALLDDPILADVPKKPTLLDVDTL 72

Query: 61  ISLELGSAMRISVLKLDGTAIDVLIMNSATLKDLKLAIKQKVNETEQSKMGHRHISWKHV 120
           ISLELGSAMRISVLKLDGT IDV IMNSA+LKDLKLAIK+KVNE EQSKMGHRHISWKHV
Sbjct: 73  ISLELGSAMRISVLKLDGTIIDVAIMNSASLKDLKLAIKKKVNEMEQSKMGHRHISWKHV 132

Query: 121 WANFCLAHHNEKILDDSSVLQDFGIRNNSQVRFIPYVMSKNSRTHSRRRKHRFFHGLNKC 180
           WANFCLAHHNEKILDDSS LQDFGIRNNSQV F+PYVMSKNSR HSRRRKHRFFHGLNKC
Sbjct: 133 WANFCLAHHNEKILDDSSALQDFGIRNNSQVHFVPYVMSKNSRRHSRRRKHRFFHGLNKC 192

[Close]

BLAST of IVF0025009.4 vs. TAIR 10
Match: AT3G07860.1 (Ubiquitin-like superfamily protein )

HSP 1 Score: 216.5 bits (550), Expect = 1.8e-56
Identity = 107/159 (67.30%), Postives = 131/159 (82.39%), Query Frame = 0


Query: 21  GYHSNNVKKVRLNSTLAALLDDPILADVPKNPTLSHVDTLISLELGSAMRISVLKLDGTA 80
           G +    K+ +L S L+ LL DPILADVP+NPTLS V TL+SLE GSAMR+SV+KLDG++
Sbjct: 4   GDYDVETKREKLKSVLSQLLADPILADVPRNPTLSDVVTLVSLEKGSAMRLSVVKLDGSS 63

Query: 81  IDVLIMNSATLKDLKLAIKQKVNETEQSKMGHRHISWKHVWANFCLAHHNEKILDDSSVL 140
           +DV +MNSATLKDLKL IK+KVNE EQ+ MGHRHISWKHVW+NFCL+ +NEK+LDD++VL
Sbjct: 64  LDVAVMNSATLKDLKLLIKKKVNEMEQANMGHRHISWKHVWSNFCLSCNNEKLLDDNAVL 123

Query: 141 QDFGIRNNSQVRFIPYVMSKNSRTHSRRRKHRFFHGLNK 180
           QD GIRNNSQV F+PYVM K    HS+R+KHR F  L+K
Sbjct: 124 QDVGIRNNSQVTFMPYVMKKGRGRHSKRKKHRLFRSLHK 162

[Close]

BLAST of IVF0025009.4 vs. TAIR 10
Match: AT5G25340.1 (Ubiquitin-like superfamily protein )

HSP 1 Score: 76.3 bits (186), Expect = 2.9e-14
Identity = 40/106 (37.74%), Postives = 67/106 (63.21%), Query Frame = 0


Query: 69  MRISVLKLDGTAIDVLIMNSATLKDLKLAIKQKVNETEQSKMGHRHISWKHVWANFCLAH 128
           +R+SVLKLDG++ DV ++ SAT+ DLK+AI+   +     K G   ISW HVW +FCL  
Sbjct: 19  IRLSVLKLDGSSFDVYVLTSATVGDLKVAIETAFSHV--PKKGPSKISWSHVWGHFCLCF 78

Query: 129 HNEKILDDSSVLQDFGIRNNSQVRFIPYVMSKN--SRTHSRRRKHR 173
             +K++ D+  + ++G+++  +VRF  +V      S+ +SR+ K +
Sbjct: 79  GGQKLITDTDCIGNYGMKDGDEVRFKNHVSGNAVLSKGYSRKSKQK 122

[Close]

BLAST of IVF0025009.4 vs. TAIR 10
Match: AT4G32270.1 (Ubiquitin-like superfamily protein )

HSP 1 Score: 72.4 bits (176), Expect = 4.2e-13
Identity = 31/89 (34.83%), Postives = 62/89 (69.66%), Query Frame = 0


Query: 69  MRISVLKLDGTAIDVLIMNSATLKDLKLAIKQKVNETEQSKMGHRHISWKHVWANFCLAH 128
           ++++VLKLDG++  + ++ +AT+ +LK+A++   +    S  G   ISW HVW  FCL++
Sbjct: 38  IKLTVLKLDGSSFGIQVLKTATVGELKMAVEAAFSHLPIS--GPGKISWPHVWGQFCLSY 97

Query: 129 HNEKILDDSSVLQDFGIRNNSQVRFIPYV 158
            +++++++S  L +FGI++  Q+RFI ++
Sbjct: 98  EDKRLINESEYLTEFGIKDGDQLRFIRHI 124

[Close]

BLAST of IVF0025009.4 vs. TAIR 10
Match: AT4G32270.2 (Ubiquitin-like superfamily protein )

HSP 1 Score: 67.4 bits (163), Expect = 1.4e-11
Identity = 31/89 (34.83%), Postives = 61/89 (68.54%), Query Frame = 0


Query: 69  MRISVLKLDGTAIDVLIMNSATLKDLKLAIKQKVNETEQSKMGHRHISWKHVWANFCLAH 128
           ++++VLKLDG++    ++ +AT+ +LK+A++   +    S  G   ISW HVW  FCL++
Sbjct: 6   IKLTVLKLDGSS---FVLKTATVGELKMAVEAAFSHLPIS--GPGKISWPHVWGQFCLSY 65

Query: 129 HNEKILDDSSVLQDFGIRNNSQVRFIPYV 158
            +++++++S  L +FGI++  Q+RFI ++
Sbjct: 66  EDKRLINESEYLTEFGIKDGDQLRFIRHI 89

[Close]

BLAST of IVF0025009.4 vs. TAIR 10
Match: AT1G80060.1 (Ubiquitin-like superfamily protein )

HSP 1 Score: 64.3 bits (155), Expect = 1.1e-10
Identity = 41/152 (26.97%), Postives = 81/152 (53.29%), Query Frame = 0


Query: 27  VKKVRLNSTLAALLDDPILADVPKNPTLS---HVDTLISLELGSAMRISVLKLDGTAIDV 86
           V+  R +  L +L+D   L+    N   S      + + L     +++SV+KL+G+  DV
Sbjct: 8   VRDGRRSGGLRSLIDPRFLSSFALNDGGSISGRRSSYLKLPPQGRIKLSVVKLNGSLFDV 67

Query: 87  LIMNSATLKDLKLAIKQKVNETEQSKMGHRHISWKHVWANFCLAHHNEKILDDSSVLQDF 146
            +    ++ +LK A++Q    T     GH  ISW HVW +FCL + ++++++D + ++  
Sbjct: 68  EVAKDCSVAELKRAVEQVF--TISPLEGHGMISWSHVWGHFCLCYRDQRLVNDKTSIRYL 127

Query: 147 GIRNNSQVRFIPYV------MSKNSRTHSRRR 170
           G+ +  Q+ F+ ++      M+K S++ S +R
Sbjct: 128 GLNDGDQLHFVRHLSIDHSPMNKRSKSPSCKR 157

The following BLAST results are available for this feature:

BLAST of IVF0025009.4 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q84WS8	2.5e-55	67.30	U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Arabidopsis thaliana O...	[more]
Q9BV90	9.1e-21	40.80	U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Homo sapiens OX=9606 G...	[more]
Q3ZBQ4	1.3e-19	39.34	U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Bos taurus OX=9913 GN=...	[more]
Q8VIK1	1.3e-19	39.34	U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Mus musculus OX=10090 ...	[more]

BLAST of IVF0025009.4 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VCB2	5.8e-95	100.00	U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Cucumis melo var. maku...	[more]
E5GCC9	5.8e-95	100.00	Ubiquitin_4 domain-containing protein OS=Cucumis melo subsp. melo OX=412675 PE=4...	[more]
A0A1S3BW55	5.8e-95	100.00	U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Cucumis melo OX=3656 G...	[more]
A0A0A0L4F3	4.7e-89	94.48	Ubiquitin_4 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G652840...	[more]
A0A6J1IJC5	3.0e-83	89.44	U11/U12 small nuclear ribonucleoprotein 25 kDa protein isoform X3 OS=Cucurbita m...	[more]

BLAST of IVF0025009.4 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008452908.1	2.99e-123	100.00	PREDICTED: U11/U12 small nuclear ribonucleoprotein 25 kDa protein [Cucumis melo]...	[more]
XP_004145525.1	1.79e-115	94.48	U11/U12 small nuclear ribonucleoprotein 25 kDa protein [Cucumis sativus] >XP_011...	[more]
XP_038898960.1	2.37e-110	91.71	U11/U12 small nuclear ribonucleoprotein 25 kDa protein [Benincasa hispida] >XP_0...	[more]
XP_022975482.1	7.48e-108	88.95	U11/U12 small nuclear ribonucleoprotein 25 kDa protein isoform X3 [Cucurbita max...	[more]
KAG6591246.1	1.14e-107	88.95	U11/U12 small nuclear ribonucleoprotein 25 kDa protein, partial [Cucurbita argyr...	[more]

BLAST of IVF0025009.4 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G07860.1	1.8e-56	67.30	Ubiquitin-like superfamily protein	[more]
AT5G25340.1	2.9e-14	37.74	Ubiquitin-like superfamily protein	[more]
AT4G32270.1	4.2e-13	34.83	Ubiquitin-like superfamily protein	[more]
AT4G32270.2	1.4e-11	34.83	Ubiquitin-like superfamily protein	[more]
AT1G80060.1	1.1e-10	26.97	Ubiquitin-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.10.20.90		coord: 63..166 e-value: 6.3E-36 score: 124.3
None	No IPR available	PANTHER	PTHR14942:SF0	U11/U12 SMALL NUCLEAR RIBONUCLEOPROTEIN 25 KDA PROTEIN	coord: 13..179
IPR040610	SNRNP25, ubiquitin-like domain	PFAM	PF18036	Ubiquitin_4	coord: 69..156 e-value: 8.7E-29 score: 99.4
IPR040610	SNRNP25, ubiquitin-like domain	CDD	cd17058	Ubl_SNRNP25	coord: 68..154 e-value: 8.2173E-36 score: 118.39
IPR039690	U11/U12 small nuclear ribonucleoprotein 25kDa protein	PANTHER	PTHR14942	U11/U12 SMALL NUCLEAR RIBONUCLEOPROTEIN 25 KDA PROTEIN	coord: 13..179
IPR029071	Ubiquitin-like domain superfamily	SUPERFAMILY	54236	Ubiquitin-like	coord: 64..160

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
IVF0025009	IVF0025009	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0025009.4-exon	IVF0025009.4-exon-chr07:518346..518736	exon
IVF0025009.4-exon	IVF0025009.4-exon-chr07:518827..518926	exon
IVF0025009.4-exon	IVF0025009.4-exon-chr07:519011..519116	exon
IVF0025009.4-exon	IVF0025009.4-exon-chr07:519226..519471	exon
IVF0025009.4-exon	IVF0025009.4-exon-chr07:519642..519884	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0025009.4-three_prime_utr	IVF0025009.4-three_prime_utr-chr07:518346..518640	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0025009.4-cds	IVF0025009.4-cds-chr07:518641..518736	CDS
IVF0025009.4-cds	IVF0025009.4-cds-chr07:518827..518926	CDS
IVF0025009.4-cds	IVF0025009.4-cds-chr07:519011..519116	CDS
IVF0025009.4-cds	IVF0025009.4-cds-chr07:519226..519469	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0025009.4-five_prime_utr	IVF0025009.4-five_prime_utr-chr07:519470..519471	five_prime_UTR
IVF0025009.4-five_prime_utr	IVF0025009.4-five_prime_utr-chr07:519642..519884	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
IVF0025009.4	IVF0025009.4-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
biological_process	GO:0006749	glutathione metabolic process
cellular_component	GO:0005689	U12-type spliceosomal complex
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0043295	glutathione binding
molecular_function	GO:0004364	glutathione transferase activity