IVF0023993.1 (mRNA) Melon (IVF77) v1

Overview
NameIVF0023993.1
TypemRNA
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionUnknown protein
Locationchr05: 2112585 .. 2112770 (+)
Sequence length186
RNA-Seq ExpressionIVF0023993.1
SyntenyIVF0023993.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGGACAGTGCATTCGATCAATTTATCAATGGAAAAATGACATTTGAAGCCATTAAACTGGAGTTCAGTCGATTGCTGACTGCCAAAGCTAACTCCAATCGAGACGATTTAGCATCAGTAATGAGCATTGGAGGAGAAGCAAATGTTGAAGCTCAAGAAACTGAAAACGACGTCGATACATGA

mRNA sequence

ATGAAGGACAGTGCATTCGATCAATTTATCAATGGAAAAATGACATTTGAAGCCATTAAACTGGAGTTCAGTCGATTGCTGACTGCCAAAGCTAACTCCAATCGAGACGATTTAGCATCAGTAATGAGCATTGGAGGAGAAGCAAATGTTGAAGCTCAAGAAACTGAAAACGACGTCGATACATGA

Coding sequence (CDS)

ATGAAGGACAGTGCATTCGATCAATTTATCAATGGAAAAATGACATTTGAAGCCATTAAACTGGAGTTCAGTCGATTGCTGACTGCCAAAGCTAACTCCAATCGAGACGATTTAGCATCAGTAATGAGCATTGGAGGAGAAGCAAATGTTGAAGCTCAAGAAACTGAAAACGACGTCGATACATGA

Protein sequence

MKDSAFDQFINGKMTFEAIKLEFSRLLTAKANSNRDDLASVMSIGGEANVEAQETENDVDT
Homology
[Close]
BLAST of IVF0023993.1 vs. NCBI nr
Match: KAE8647351.1 (hypothetical protein Csa_004301 [Cucumis sativus])

HSP 1 Score: 115 bits (287), Expect = 4.80e-32
Identity = 60/61 (98.36%), Postives = 61/61 (100.00%), Query Frame = 0 

Query: 1  MKDSAFDQFINGKMTFEAIKLEFSRLLTAKANSNRDDLASVMSIGGEANVEAQETENDVD 60
          MKDSAFDQFINGKMTFEAIKLEFSRLLTAKANSNRDDLASVMSIGGEANVEAQETE+DVD
Sbjct: 1  MKDSAFDQFINGKMTFEAIKLEFSRLLTAKANSNRDDLASVMSIGGEANVEAQETEDDVD 60

The following BLAST results are available for this feature:
BLAST of IVF0023993.1 vs.
Match NameE-valueIdentityDescription
BLAST of IVF0023993.1 vs.
Match NameE-valueIdentityDescription
BLAST of IVF0023993.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8647351.14.80e-3298.36hypothetical protein Csa_004301 [Cucumis sativus][more]
BLAST of IVF0023993.1 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
IVF0023993IVF0023993gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
IVF0023993.1-exonIVF0023993.1-exon-chr05:2112585..2112770exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
IVF0023993.1-cdsIVF0023993.1-cds-chr05:2112585..2112770CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
IVF0023993.1IVF0023993.1-proteinpolypeptide