IVF0023307.1 (mRNA) Melon (IVF77) v1

Overview


Name	IVF0023307.1
Type	mRNA
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	tRNA pseudouridine synthase
Location	chr08: 18405126 .. 18405345 (+)
Sequence length	186
RNA-Seq Expression	IVF0023307.1
Synteny	IVF0023307.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAAACACTGATGTAAATAGGAGGATTATGTCTACTTGCATCCTTTGGCAGCTTGTTAGAAATATCTATAGGGAAGTTTGTAGATGAGACGAAAGCTCAAATGCTGAAAGATAAATGCTTACCATTAGAAGGATGTGTTGTGGTTGCTGGGCGCACTGACAAAGGGGTGACTGCTCTACAACAAGTTTGCACAATTTGTTGTATGTTAGCTTTCTAA

mRNA sequence

ATGGAAAACACTGATGTAAATAGGAGGATTATGTCTACTTGCATCCTTTGGCAGCTTACGAAAGCTCAAATGCTGAAAGATAAATGCTTACCATTAGAAGGATGTGTTGTGGTTGCTGGGCGCACTGACAAAGGGGTGACTGCTCTACAACAAGTTTGCACAATTTGTTGTATGTTAGCTTTCTAA

Coding sequence (CDS)

ATGGAAAACACTGATGTAAATAGGAGGATTATGTCTACTTGCATCCTTTGGCAGCTTACGAAAGCTCAAATGCTGAAAGATAAATGCTTACCATTAGAAGGATGTGTTGTGGTTGCTGGGCGCACTGACAAAGGGGTGACTGCTCTACAACAAGTTTGCACAATTTGTTGTATGTTAGCTTTCTAA

Protein sequence

MENTDVNRRIMSTCILWQLTKAQMLKDKCLPLEGCVVVAGRTDKGVTALQQVCTICCMLAF

Homology

[Close]

BLAST of IVF0023307.1 vs. ExPASy TrEMBL
Match: A0A6P3ZQW7 (tRNA pseudouridine synthase OS=Ziziphus jujuba OX=326968 GN=LOC107417573 PE=3 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.4e-08
Identity = 31/34 (91.18%), Postives = 33/34 (97.06%), Query Frame = 0


Query: 21 KAQMLKDKCLPLEGCVVVAGRTDKGVTALQQVCT 55
          KAQ+LKDKCLPLEGC VVAGRTDKGVTALQQVC+
Sbjct: 18 KAQVLKDKCLPLEGCAVVAGRTDKGVTALQQVCS 51

[Close]

BLAST of IVF0023307.1 vs. ExPASy TrEMBL
Match: A0A6P4A7G1 (tRNA pseudouridine synthase OS=Ziziphus jujuba OX=326968 GN=LOC107417627 PE=3 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.4e-08
Identity = 31/34 (91.18%), Postives = 33/34 (97.06%), Query Frame = 0


Query: 21  KAQMLKDKCLPLEGCVVVAGRTDKGVTALQQVCT 55
           KAQ+LKDKCLPLEGC VVAGRTDKGVTALQQVC+
Sbjct: 169 KAQVLKDKCLPLEGCAVVAGRTDKGVTALQQVCS 202

[Close]

BLAST of IVF0023307.1 vs. ExPASy TrEMBL
Match: A0A5D3DY63 (tRNA pseudouridine synthase A OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold629G001640 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.4e-08
Identity = 31/34 (91.18%), Postives = 33/34 (97.06%), Query Frame = 0


Query: 21  KAQMLKDKCLPLEGCVVVAGRTDKGVTALQQVCT 55
           KAQMLKDKCLPLEGC VVAGRTDKGVTAL+QVC+
Sbjct: 159 KAQMLKDKCLPLEGCAVVAGRTDKGVTALRQVCS 192

[Close]

BLAST of IVF0023307.1 vs. ExPASy TrEMBL
Match: A0A5A7UXE7 (tRNA pseudouridine synthase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G004790 PE=3 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.4e-08
Identity = 31/34 (91.18%), Postives = 33/34 (97.06%), Query Frame = 0


Query: 21  KAQMLKDKCLPLEGCVVVAGRTDKGVTALQQVCT 55
           KAQMLKDKCLPLEGC VVAGRTDKGVTAL+QVC+
Sbjct: 159 KAQMLKDKCLPLEGCAVVAGRTDKGVTALRQVCS 192

[Close]

BLAST of IVF0023307.1 vs. ExPASy TrEMBL
Match: A0A1S3BWI6 (tRNA pseudouridine synthase OS=Cucumis melo OX=3656 GN=LOC103494203 PE=3 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.4e-08
Identity = 31/34 (91.18%), Postives = 33/34 (97.06%), Query Frame = 0


Query: 21  KAQMLKDKCLPLEGCVVVAGRTDKGVTALQQVCT 55
           KAQMLKDKCLPLEGC VVAGRTDKGVTAL+QVC+
Sbjct: 159 KAQMLKDKCLPLEGCAVVAGRTDKGVTALRQVCS 192

[Close]

BLAST of IVF0023307.1 vs. NCBI nr
Match: KAF3437272.1 (hypothetical protein FNV43_RR20025 [Rhamnella rubrinervis])

HSP 1 Score: 70.1 bits (170), Expect = 4.17e-12
Identity = 31/34 (91.18%), Postives = 34/34 (100.00%), Query Frame = 0


Query: 21  KAQMLKDKCLPLEGCVVVAGRTDKGVTALQQVCT 54
           KAQ+LKDKCLP+EGCVVVAGRTDKGVTALQQVC+
Sbjct: 161 KAQLLKDKCLPVEGCVVVAGRTDKGVTALQQVCS 194

[Close]

BLAST of IVF0023307.1 vs. NCBI nr
Match: XP_015881667.1 (uncharacterized protein LOC107417573 [Ziziphus jujuba])

HSP 1 Score: 69.3 bits (168), Expect = 5.11e-12
Identity = 31/34 (91.18%), Postives = 33/34 (97.06%), Query Frame = 0


Query: 21 KAQMLKDKCLPLEGCVVVAGRTDKGVTALQQVCT 54
          KAQ+LKDKCLPLEGC VVAGRTDKGVTALQQVC+
Sbjct: 18 KAQVLKDKCLPLEGCAVVAGRTDKGVTALQQVCS 51

[Close]

BLAST of IVF0023307.1 vs. NCBI nr
Match: TYK28521.1 (tRNA pseudouridine synthase A [Cucumis melo var. makuwa])

HSP 1 Score: 69.3 bits (168), Expect = 6.34e-12
Identity = 31/34 (91.18%), Postives = 33/34 (97.06%), Query Frame = 0


Query: 21  KAQMLKDKCLPLEGCVVVAGRTDKGVTALQQVCT 54
           KAQMLKDKCLPLEGC VVAGRTDKGVTAL+QVC+
Sbjct: 159 KAQMLKDKCLPLEGCAVVAGRTDKGVTALRQVCS 192

[Close]

BLAST of IVF0023307.1 vs. NCBI nr
Match: XP_008453520.1 (PREDICTED: tRNA pseudouridine synthase A [Cucumis melo] >KAA0058161.1 tRNA pseudouridine synthase A [Cucumis melo var. makuwa])

HSP 1 Score: 69.3 bits (168), Expect = 7.83e-12
Identity = 31/34 (91.18%), Postives = 33/34 (97.06%), Query Frame = 0


Query: 21  KAQMLKDKCLPLEGCVVVAGRTDKGVTALQQVCT 54
           KAQMLKDKCLPLEGC VVAGRTDKGVTAL+QVC+
Sbjct: 159 KAQMLKDKCLPLEGCAVVAGRTDKGVTALRQVCS 192

[Close]

BLAST of IVF0023307.1 vs. NCBI nr
Match: XP_015881730.1 (uncharacterized protein LOC107417627 [Ziziphus jujuba])

HSP 1 Score: 69.3 bits (168), Expect = 7.87e-12
Identity = 31/34 (91.18%), Postives = 33/34 (97.06%), Query Frame = 0


Query: 21  KAQMLKDKCLPLEGCVVVAGRTDKGVTALQQVCT 54
           KAQ+LKDKCLPLEGC VVAGRTDKGVTALQQVC+
Sbjct: 169 KAQVLKDKCLPLEGCAVVAGRTDKGVTALQQVCS 202

[Close]

BLAST of IVF0023307.1 vs. TAIR 10
Match: AT5G35400.1 (Pseudouridine synthase family protein )

HSP 1 Score: 55.8 bits (133), Expect = 1.4e-08
Identity = 26/34 (76.47%), Postives = 30/34 (88.24%), Query Frame = 0


Query: 21  KAQMLKDKCLPLEGCVVVAGRTDKGVTALQQVCT 55
           KAQ+LK KC PLEG V+VAGRTDKGV+AL QVC+
Sbjct: 134 KAQLLKKKCKPLEGRVLVAGRTDKGVSALNQVCS 167

[Close]

BLAST of IVF0023307.1 vs. TAIR 10
Match: AT5G35400.2 (Pseudouridine synthase family protein )

HSP 1 Score: 55.8 bits (133), Expect = 1.4e-08
Identity = 26/34 (76.47%), Postives = 30/34 (88.24%), Query Frame = 0


Query: 21  KAQMLKDKCLPLEGCVVVAGRTDKGVTALQQVCT 55
           KAQ+LK KC PLEG V+VAGRTDKGV+AL QVC+
Sbjct: 134 KAQLLKKKCKPLEGRVLVAGRTDKGVSALNQVCS 167

The following BLAST results are available for this feature:

BLAST of IVF0023307.1 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0023307.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6P3ZQW7	1.4e-08	91.18	tRNA pseudouridine synthase OS=Ziziphus jujuba OX=326968 GN=LOC107417573 PE=3 SV...	[more]
A0A6P4A7G1	1.4e-08	91.18	tRNA pseudouridine synthase OS=Ziziphus jujuba OX=326968 GN=LOC107417627 PE=3 SV...	[more]
A0A5D3DY63	1.4e-08	91.18	tRNA pseudouridine synthase A OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A5A7UXE7	1.4e-08	91.18	tRNA pseudouridine synthase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf...	[more]
A0A1S3BWI6	1.4e-08	91.18	tRNA pseudouridine synthase OS=Cucumis melo OX=3656 GN=LOC103494203 PE=3 SV=1	[more]

BLAST of IVF0023307.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAF3437272.1	4.17e-12	91.18	hypothetical protein FNV43_RR20025 [Rhamnella rubrinervis]	[more]
XP_015881667.1	5.11e-12	91.18	uncharacterized protein LOC107417573 [Ziziphus jujuba]	[more]
TYK28521.1	6.34e-12	91.18	tRNA pseudouridine synthase A [Cucumis melo var. makuwa]	[more]
XP_008453520.1	7.83e-12	91.18	PREDICTED: tRNA pseudouridine synthase A [Cucumis melo] >KAA0058161.1 tRNA pseud...	[more]
XP_015881730.1	7.87e-12	91.18	uncharacterized protein LOC107417627 [Ziziphus jujuba]	[more]

BLAST of IVF0023307.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G35400.1	1.4e-08	76.47	Pseudouridine synthase family protein	[more]
AT5G35400.2	1.4e-08	76.47	Pseudouridine synthase family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR020094	Pseudouridine synthase TruA/RsuA/RluB/E/F, N-terminal	GENE3D	3.30.70.580		coord: 2..59 e-value: 5.5E-6 score: 28.3
IPR020103	Pseudouridine synthase, catalytic domain superfamily	SUPERFAMILY	55120	Pseudouridine synthase	coord: 32..58

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
IVF0023307	IVF0023307	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0023307.1-exon	IVF0023307.1-exon-chr08:18405126..18405182	exon
IVF0023307.1-exon	IVF0023307.1-exon-chr08:18405217..18405345	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0023307.1-cds	IVF0023307.1-cds-chr08:18405126..18405182	CDS
IVF0023307.1-cds	IVF0023307.1-cds-chr08:18405217..18405345	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
IVF0023307.1	IVF0023307.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0001522	pseudouridine synthesis
biological_process	GO:0009451	RNA modification
biological_process	GO:0031119	tRNA pseudouridine synthesis
molecular_function	GO:0009982	pseudouridine synthase activity
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0106029	tRNA pseudouridine synthase activity