IVF0020592.2 (mRNA) Melon (IVF77) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ACGAACCTGACAGATTTCACGAGCAAATCACGAATCTGGAAGCAGGACGAGCGGTGCGAACGAACCCACGAACGGAACAGAGAAGAGTCCGGGCGTTGGACCATTGATTCCTTGTTCAATCAGAAATGGCGCCTACAAAGAAATCGAAAAAGCGCAACAAGGATTCCAAGAAACTGAAGAAACGTAAAAATTTGAGCGTTGTTCCCATGGAACCCAGAGCATCAGACCCCGATTGGTGGGAAATTTTCTGGCACAAAAAACTGTTCCCTCTCAGGTCACTCCCCAATCCTAACATTTCTACTTCATTTTGCTTTGTTTTGTTTTGTTTTGTTTTTTTTTTTTGAGTTGAACTTCATATTTCTTTTGGCTGGATCATTTTGAAATGTTGAATATTTTCTGCCCTTTTCTTTTTAGTAGCTGTAGGAGTAGTGTGAGAGGTTTCGTCGAGGGAGAAAGTTTGAAAATTTGAGCCATTTAGATCAGTTCTGAGAATTGAATAGGATTTTTTTTTGTAATAATTGGAATGCTGAGAATGATTCAGGTTTAGGGTGCTATGGTTGAAGAGTTGGGAATTTATGAACTGTTGCTCATTACACATTTTCAGTCTTAACTTTGATTGCTGAGGCATTTTCAAACATCTTTCTAAATATAGGTTCTCCTGGAGGTGATGATGAAGCAGTTGGATTCAAGTATTTCTTTCGAACTTCTAAGAAAACTTTCGACTACATTTGTTCCCTCGTACGAGAAGATCTCATTTCAAGGCCACCGTCTGGGCTTATCAATATTGAAGGGAGACTTCTTAGTGTAGAGAAGCAGGTTGCAATTGCTATGCGAAGATTGGCATCGGGAGAATCACAAGTTTCTGTGGGAGCTGCCTTTGGAGTTGGCCAGTCCACAGTCTCTCAGGTTACTTGGAGATTTGTCGAAGCTTTGGAGCAACGTGCGAAGCACCATCTTCAGTGGCCGAGTTCCTCTAGGTTGGAGGAAATCAAATCACATTTTGAAGCTTGCTTTAGTTTGCCTAATTGTTGTGGAGCCATAGATGCAACGCACATCATTATGACACTTCCAGCTGTACAAACATCAGATGATTGGTGTGATACCAACAATAATTACAGTATGTTCTTGCAGGGAATTGTTGATCACCAGATGAGATTTCTTGACATTGTAACTGGTTGGCCTGGGGCCATGACAACTAGTAGGTTATTGAAGTGCTCACAAATTTTCAAACTATGCGATGCCGGTGAACGCTTGAATGGGAATGTAAAGAAGTTCTCTGGAGGGTCAGAAATCAGAGAATACTTAGTTGGTGGAGTTGGTTATCCTCTTCTTCCTTGGTTGATTACTCCTTACGAAAGTGACAACCTATCGCCGTTGAAATTCAACTTCAATGCTGTGCAAGGAGCTGCGAAATCGCTTGCTGTGAGGGCATTCTCTCAGTTGAAGGGAAGCTGGAGAATCCTCAACAAGGTGATGTGGAGACCTGATAAGCGGAAGCTGCCAAGCATTATACTGGTATGCTGTTTACTTCAAAACATTATAATTGACAATGGAGATGAGTTGCAACCAGATGTTGCTTTATCTGGTCATCACGATTTGGGATATCAGGAGCATTGTTGTAAACAGTTAGATCCATTGGGGAACAATCTAAGGGAAAACTTAGCCAAGCACTTGCATCAAAATAAAGAGAGAGTTTGTTCTTCATAAGACCCAAAATTGCATTGGTTTCCCAGAACTTGTCAACGATCTAGTATAACTTAGATTTGTATTTACACTGATGAAGCAATGCATATTTTGTTCGAAATTTTCCCCATTGTGAAGAGGAGTATTTAAGTCATGTCATGTTAGTTTCTGTAAGTATATATTCTTCAATGAAAACTCCAATTTTCCTCTGGGAGATTAGTTACAGGGCTCTTAATAAACGTGGCAAAGTTCAGCGGCGCTTACCTTACTGCAGCCCCTATGTACGGCCCCATTGCTCTCTCACCTAATTGCAGCCCCTATGTACGGCAGAACCTGATACACCTGACTATTTGTTCATCACTTGCAATTATGCTGCTAGATTTTGGAAGGGAAATTGCTCTCTCCTTTGGGTGACTGACTGCCCTTCTCAATGAGATCATTAATCTCCTCACTTATACCCTAAC ACGAACCTGACAGATTTCACGAGCAAATCACGAATCTGGAAGCAGGACGAGCGGTGCGAACGAACCCACGAACGGAACAGAGAAGAGTCCGGGCGTTGGACCATTGATTCCTTGTTCAATCAGAAATGGCGCCTACAAAGAAATCGAAAAAGCGCAACAAGGATTCCAAGAAACTGAAGAAACGTAAAAATTTGAGCGTTGTTCCCATGGAACCCAGAGCATCAGACCCCGATTGGTGGGAAATTTTCTGGCACAAAAAACTGTTCCCTCTCAGGTTCTCCTGGAGGTGATGATGAAGCAGTTGGATTCAAGTATTTCTTTCGAACTTCTAAGAAAACTTTCGACTACATTTGTTCCCTCGTACGAGAAGATCTCATTTCAAGGCCACCGTCTGGGCTTATCAATATTGAAGGGAGACTTCTTAGTGTAGAGAAGCAGGTTGCAATTGCTATGCGAAGATTGGCATCGGGAGAATCACAAGTTTCTGTGGGAGCTGCCTTTGGAGTTGGCCAGTCCACAGTCTCTCAGGTTACTTGGAGATTTGTCGAAGCTTTGGAGCAACGTGCGAAGCACCATCTTCAGTGGCCGAGTTCCTCTAGGTTGGAGGAAATCAAATCACATTTTGAAGCTTGCTTTAGTTTGCCTAATTGTTGTGGAGCCATAGATGCAACGCACATCATTATGACACTTCCAGCTGTACAAACATCAGATGATTGGTGTGATACCAACAATAATTACAGTATGTTCTTGCAGGGAATTGTTGATCACCAGATGAGATTTCTTGACATTGTAACTGGTTGGCCTGGGGCCATGACAACTAGTAGGTTATTGAAGTGCTCACAAATTTTCAAACTATGCGATGCCGGTGAACGCTTGAATGGGAATGTAAAGAAGTTCTCTGGAGGGTCAGAAATCAGAGAATACTTAGTTGGTGGAGTTGGTTATCCTCTTCTTCCTTGGTTGATTACTCCTTACGAAAGTGACAACCTATCGCCGTTGAAATTCAACTTCAATGCTGTGCAAGGAGCTGCGAAATCGCTTGCTGTGAGGGCATTCTCTCAGTTGAAGGGAAGCTGGAGAATCCTCAACAAGGTGATGTGGAGACCTGATAAGCGGAAGCTGCCAAGCATTATACTGGTATGCTGTTTACTTCAAAACATTATAATTGACAATGGAGATGAGTTGCAACCAGATGTTGCTTTATCTGGTCATCACGATTTGGGATATCAGGAGCATTGTTGTAAACAGTTAGATCCATTGGGGAACAATCTAAGGGAAAACTTAGCCAAGCACTTGCATCAAAATAAAGAGAGAGTTTGTTCTTCATAAGACCCAAAATTGCATTGGTTTCCCAGAACTTGTCAACGATCTAGTATAACTTAGATTTGTATTTACACTGATGAAGCAATGCATATTTTGTTCGAAATTTTCCCCATTGTGAAGAGGAGTATTTAAGTCATGTCATGTTAGTTTCTGTAAGTATATATTCTTCAATGAAAACTCCAATTTTCCTCTGGGAGATTAGTTACAGGGCTCTTAATAAACGTGGCAAAGTTCAGCGGCGCTTACCTTACTGCAGCCCCTATGTACGGCCCCATTGCTCTCTCACCTAATTGCAGCCCCTATGTACGGCAGAACCTGATACACCTGACTATTTGTTCATCACTTGCAATTATGCTGCTAGATTTTGGAAGGGAAATTGCTCTCTCCTTTGGGTGACTGACTGCCCTTCTCAATGAGATCATTAATCTCCTCACTTATACCCTAAC ATGCGAAGATTGGCATCGGGAGAATCACAAGTTTCTGTGGGAGCTGCCTTTGGAGTTGGCCAGTCCACAGTCTCTCAGGTTACTTGGAGATTTGTCGAAGCTTTGGAGCAACGTGCGAAGCACCATCTTCAGTGGCCGAGTTCCTCTAGGTTGGAGGAAATCAAATCACATTTTGAAGCTTGCTTTAGTTTGCCTAATTGTTGTGGAGCCATAGATGCAACGCACATCATTATGACACTTCCAGCTGTACAAACATCAGATGATTGGTGTGATACCAACAATAATTACAGTATGTTCTTGCAGGGAATTGTTGATCACCAGATGAGATTTCTTGACATTGTAACTGGTTGGCCTGGGGCCATGACAACTAGTAGGTTATTGAAGTGCTCACAAATTTTCAAACTATGCGATGCCGGTGAACGCTTGAATGGGAATGTAAAGAAGTTCTCTGGAGGGTCAGAAATCAGAGAATACTTAGTTGGTGGAGTTGGTTATCCTCTTCTTCCTTGGTTGATTACTCCTTACGAAAGTGACAACCTATCGCCGTTGAAATTCAACTTCAATGCTGTGCAAGGAGCTGCGAAATCGCTTGCTGTGAGGGCATTCTCTCAGTTGAAGGGAAGCTGGAGAATCCTCAACAAGGTGATGTGGAGACCTGATAAGCGGAAGCTGCCAAGCATTATACTGGTATGCTGTTTACTTCAAAACATTATAATTGACAATGGAGATGAGTTGCAACCAGATGTTGCTTTATCTGGTCATCACGATTTGGGATATCAGGAGCATTGTTGTAAACAGTTAGATCCATTGGGGAACAATCTAAGGGAAAACTTAGCCAAGCACTTGCATCAAAATAAAGAGAGAGTTTGTTCTTCATAA MRRLASGESQVSVGAAFGVGQSTVSQVTWRFVEALEQRAKHHLQWPSSSRLEEIKSHFEACFSLPNCCGAIDATHIIMTLPAVQTSDDWCDTNNNYSMFLQGIVDHQMRFLDIVTGWPGAMTTSRLLKCSQIFKLCDAGERLNGNVKKFSGGSEIREYLVGGVGYPLLPWLITPYESDNLSPLKFNFNAVQGAAKSLAVRAFSQLKGSWRILNKVMWRPDKRKLPSIILVCCLLQNIIIDNGDELQPDVALSGHHDLGYQEHCCKQLDPLGNNLRENLAKHLHQNKERVCSS Homology
BLAST of IVF0020592.2 vs. ExPASy Swiss-Prot
Match: Q94K49 (Protein ANTAGONIST OF LIKE HETEROCHROMATIN PROTEIN 1 OS=Arabidopsis thaliana OX=3702 GN=ALP1 PE=1 SV=1) HSP 1 Score: 422.2 bits (1084), Expect = 4.9e-117 Identity = 198/282 (70.21%), Postives = 228/282 (80.85%), Query Frame = 0
BLAST of IVF0020592.2 vs. ExPASy Swiss-Prot
Match: Q9M2U3 (Protein ALP1-like OS=Arabidopsis thaliana OX=3702 GN=At3g55350 PE=2 SV=1) HSP 1 Score: 302.4 bits (773), Expect = 5.7e-81 Identity = 147/283 (51.94%), Postives = 187/283 (66.08%), Query Frame = 0
BLAST of IVF0020592.2 vs. ExPASy Swiss-Prot
Match: Q6AZB8 (Putative nuclease HARBI1 OS=Danio rerio OX=7955 GN=harbi1 PE=2 SV=1) HSP 1 Score: 92.0 bits (227), Expect = 1.2e-17 Identity = 62/240 (25.83%), Postives = 107/240 (44.58%), Query Frame = 0
BLAST of IVF0020592.2 vs. ExPASy TrEMBL
Match: A0A5A7V486 (Putative nuclease HARBI1 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold39G00570 PE=3 SV=1) HSP 1 Score: 610.9 bits (1574), Expect = 2.7e-171 Identity = 292/292 (100.00%), Postives = 292/292 (100.00%), Query Frame = 0
BLAST of IVF0020592.2 vs. ExPASy TrEMBL
Match: A0A1S3CEQ5 (uncharacterized protein LOC103500068 OS=Cucumis melo OX=3656 GN=LOC103500068 PE=3 SV=1) HSP 1 Score: 610.9 bits (1574), Expect = 2.7e-171 Identity = 292/292 (100.00%), Postives = 292/292 (100.00%), Query Frame = 0
BLAST of IVF0020592.2 vs. ExPASy TrEMBL
Match: A0A0A0K4D8 (DDE Tnp4 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G323100 PE=3 SV=1) HSP 1 Score: 594.3 bits (1531), Expect = 2.7e-166 Identity = 284/292 (97.26%), Postives = 287/292 (98.29%), Query Frame = 0
BLAST of IVF0020592.2 vs. ExPASy TrEMBL
Match: A0A6J1KRU3 (protein ANTAGONIST OF LIKE HETEROCHROMATIN PROTEIN 1 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111497682 PE=3 SV=1) HSP 1 Score: 563.5 bits (1451), Expect = 5.0e-157 Identity = 266/292 (91.10%), Postives = 275/292 (94.18%), Query Frame = 0
BLAST of IVF0020592.2 vs. ExPASy TrEMBL
Match: A0A6J1KQ50 (protein ANTAGONIST OF LIKE HETEROCHROMATIN PROTEIN 1 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111497682 PE=3 SV=1) HSP 1 Score: 563.5 bits (1451), Expect = 5.0e-157 Identity = 266/292 (91.10%), Postives = 275/292 (94.18%), Query Frame = 0
BLAST of IVF0020592.2 vs. NCBI nr
Match: KAA0061306.1 (putative nuclease HARBI1 isoform X1 [Cucumis melo var. makuwa] >TYK09885.1 putative nuclease HARBI1 isoform X1 [Cucumis melo var. makuwa]) HSP 1 Score: 610 bits (1572), Expect = 9.77e-219 Identity = 292/292 (100.00%), Postives = 292/292 (100.00%), Query Frame = 0
BLAST of IVF0020592.2 vs. NCBI nr
Match: XP_008461482.1 (PREDICTED: uncharacterized protein LOC103500068 [Cucumis melo]) HSP 1 Score: 610 bits (1572), Expect = 9.77e-219 Identity = 292/292 (100.00%), Postives = 292/292 (100.00%), Query Frame = 0
BLAST of IVF0020592.2 vs. NCBI nr
Match: XP_011659137.1 (protein ANTAGONIST OF LIKE HETEROCHROMATIN PROTEIN 1 [Cucumis sativus] >KGN44515.1 hypothetical protein Csa_016499 [Cucumis sativus]) HSP 1 Score: 593 bits (1529), Expect = 3.47e-212 Identity = 284/292 (97.26%), Postives = 287/292 (98.29%), Query Frame = 0
BLAST of IVF0020592.2 vs. NCBI nr
Match: XP_038896181.1 (protein ANTAGONIST OF LIKE HETEROCHROMATIN PROTEIN 1 [Benincasa hispida]) HSP 1 Score: 588 bits (1516), Expect = 3.31e-210 Identity = 279/292 (95.55%), Postives = 286/292 (97.95%), Query Frame = 0
BLAST of IVF0020592.2 vs. NCBI nr
Match: XP_023513674.1 (protein ANTAGONIST OF LIKE HETEROCHROMATIN PROTEIN 1 isoform X2 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 565 bits (1456), Expect = 4.55e-201 Identity = 268/292 (91.78%), Postives = 276/292 (94.52%), Query Frame = 0
BLAST of IVF0020592.2 vs. TAIR 10
Match: AT3G63270.1 (CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: PIF / Ping-Pong family of plant transposases (TAIR:AT3G55350.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). ) HSP 1 Score: 422.2 bits (1084), Expect = 3.5e-118 Identity = 198/282 (70.21%), Postives = 228/282 (80.85%), Query Frame = 0
BLAST of IVF0020592.2 vs. TAIR 10
Match: AT3G55350.1 (PIF / Ping-Pong family of plant transposases ) HSP 1 Score: 302.4 bits (773), Expect = 4.0e-82 Identity = 147/283 (51.94%), Postives = 187/283 (66.08%), Query Frame = 0
BLAST of IVF0020592.2 vs. TAIR 10
Match: AT5G12010.1 (unknown protein; INVOLVED IN: response to salt stress; LOCATED IN: chloroplast, plasma membrane, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G29780.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). ) HSP 1 Score: 129.8 bits (325), Expect = 3.6e-30 Identity = 78/288 (27.08%), Postives = 140/288 (48.61%), Query Frame = 0
BLAST of IVF0020592.2 vs. TAIR 10
Match: AT4G29780.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G12010.1); Has 945 Blast hits to 944 proteins in 87 species: Archae - 0; Bacteria - 0; Metazoa - 519; Fungi - 43; Plants - 365; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink). ) HSP 1 Score: 118.6 bits (296), Expect = 8.2e-27 Identity = 78/287 (27.18%), Postives = 137/287 (47.74%), Query Frame = 0
BLAST of IVF0020592.2 vs. TAIR 10
Match: AT1G72270.1 (CONTAINS InterPro DOMAIN/s: Ribosome 60S biogenesis N-terminal (InterPro:IPR021714); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G27010.1); Has 772 Blast hits to 657 proteins in 120 species: Archae - 0; Bacteria - 0; Metazoa - 344; Fungi - 94; Plants - 322; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink). ) HSP 1 Score: 98.2 bits (243), Expect = 1.2e-20 Identity = 50/150 (33.33%), Postives = 84/150 (56.00%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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