IVF0019763.1 (mRNA) Melon (IVF77) v1

Overview


Name	IVF0019763.1
Type	mRNA
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Integrase catalytic domain-containing protein
Location	chr01: 20222350 .. 20222682 (-)
Sequence length	333
RNA-Seq Expression	IVF0019763.1
Synteny	IVF0019763.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGCAAAGGTCTTGCAGAGTGGATACTTCTGGCCTACTCTATTTAAGGATTTAAGGAACTTTGTGGTCAACTGTGATAGGTGCCAAAGAACAGGAAACATGTTTCATCTCGATGAAATGCCTCAACAGCCCATCCTGGAGATTGAACTCTTTAATGTGTGGGGAATTGACTTTATGAGACTGTTTCCTCAATCTGGTGAATACTTATACATCTTGTTGGATGTGGACTATGTCTTGAAGTGCGTTGAAGCTATCTCTTGTACGAAGAACGATGTGATTACAATCAGAAATTTTTCAAAAGAACATCTTCTCGAATTTTGGGACACATAG

mRNA sequence

ATGGCTGCAAAGGTCTTGCAGAGTGGATACTTCTGGCCTACTCTATTTAAGGATTTAAGGAACTTTGTGGTCAACTGTGATAGGTGCCAAAGAACAGGAAACATGTTTCATCTCGATGAAATGCCTCAACAGCCCATCCTGGAGATTGAACTCTTTAATGTGTGGGGAATTGACTTTATGAGACTGTTTCCTCAATCTGGTGAATACTTATACATCTTGTTGGATGTGGACTATGTCTTGAAGTGCGTTGAAGCTATCTCTTGTACGAAGAACGATGTGATTACAATCAGAAATTTTTCAAAAGAACATCTTCTCGAATTTTGGGACACATAG

Coding sequence (CDS)

ATGGCTGCAAAGGTCTTGCAGAGTGGATACTTCTGGCCTACTCTATTTAAGGATTTAAGGAACTTTGTGGTCAACTGTGATAGGTGCCAAAGAACAGGAAACATGTTTCATCTCGATGAAATGCCTCAACAGCCCATCCTGGAGATTGAACTCTTTAATGTGTGGGGAATTGACTTTATGAGACTGTTTCCTCAATCTGGTGAATACTTATACATCTTGTTGGATGTGGACTATGTCTTGAAGTGCGTTGAAGCTATCTCTTGTACGAAGAACGATGTGATTACAATCAGAAATTTTTCAAAAGAACATCTTCTCGAATTTTGGGACACATAG

Protein sequence

MAAKVLQSGYFWPTLFKDLRNFVVNCDRCQRTGNMFHLDEMPQQPILEIELFNVWGIDFMRLFPQSGEYLYILLDVDYVLKCVEAISCTKNDVITIRNFSKEHLLEFWDT

Homology

[Close]

BLAST of IVF0019763.1 vs. ExPASy Swiss-Prot
Match: P92516 (Uncharacterized mitochondrial protein AtMg00750 OS=Arabidopsis thaliana OX=3702 GN=AtMg00750 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 3.5e-15
Identity = 34/57 (59.65%), Postives = 43/57 (75.44%), Query Frame = 0


Query: 5  VLQSGYFWPTLFKDLRNFVVNCDRCQRTGNMFHLDEMPQQPILEIELFNVWGIDFMR 62
          VLQ+G++WPT FKD   FV +CD CQR GN    +EMPQ  ILE+E+F+VWGI FM+
Sbjct: 35 VLQAGFYWPTTFKDAHGFVSSCDACQRKGNFTKRNEMPQHFILEVEVFDVWGIYFMK 91

[Close]

BLAST of IVF0019763.1 vs. ExPASy TrEMBL
Match: A0A1S4DWG6 (uncharacterized mitochondrial protein AtMg00750-like OS=Cucumis melo OX=3656 GN=LOC107990858 PE=4 SV=1)

HSP 1 Score: 238.8 bits (608), Expect = 1.1e-59
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 0


Query: 1   MAAKVLQSGYFWPTLFKDLRNFVVNCDRCQRTGNMFHLDEMPQQPILEIELFNVWGIDFM 60
           MAAKVLQSGYFWPTLFKDLRNFVVNCDRCQRTGNMFHLDEMPQQPILEIELFNVWGIDFM
Sbjct: 1   MAAKVLQSGYFWPTLFKDLRNFVVNCDRCQRTGNMFHLDEMPQQPILEIELFNVWGIDFM 60

Query: 61  RLFPQSGEYLYILLDVDYVLKCVEAISCTKNDVITIRNFSKEHLLEFWDT 111
           RLFPQSGEYLYILLDVDYVLKCVEAISCTKNDVITIRNFSKEHLLEFWDT
Sbjct: 61  RLFPQSGEYLYILLDVDYVLKCVEAISCTKNDVITIRNFSKEHLLEFWDT 110

[Close]

BLAST of IVF0019763.1 vs. ExPASy TrEMBL
Match: A0A5A7TR90 (Retrovirus-related Pol polyprotein from transposon 412 family OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold316G001650 PE=4 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 3.7e-36
Identity = 74/103 (71.84%), Postives = 84/103 (81.55%), Query Frame = 0


Query: 2   AAKVLQSGYFWPTLFKDLRNFVVNCDRCQRTGNMFHLDEMPQQPILEIELFNVWGIDFMR 61
           AAKVLQS YFWPTLF+D+RNFVV CD+CQRTGNM H DEMPQQPILEIELF+VWGIDFM 
Sbjct: 165 AAKVLQSRYFWPTLFQDVRNFVVKCDQCQRTGNMSHHDEMPQQPILEIELFDVWGIDFMG 224

Query: 62  LFPQSGEYLYILLDVDYVLKCVEAISCTKNDVITIRNFSKEHL 105
            FPQSG ++YILL + YV K  EAISC KND I +  F K ++
Sbjct: 225 PFPQSGGHIYILLAIIYVSKMFEAISCMKNDAIIVSKFLKRNI 267

[Close]

BLAST of IVF0019763.1 vs. ExPASy TrEMBL
Match: A0A5D3BCU9 (Integrase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold220G00570 PE=4 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 8.2e-36
Identity = 73/103 (70.87%), Postives = 84/103 (81.55%), Query Frame = 0


Query: 2   AAKVLQSGYFWPTLFKDLRNFVVNCDRCQRTGNMFHLDEMPQQPILEIELFNVWGIDFMR 61
           AAKVLQS YFWPTLF+D+RNFVV CD+CQRT NM H DEMPQQPILEIELF+VWGIDFM 
Sbjct: 306 AAKVLQSRYFWPTLFQDVRNFVVKCDQCQRTENMSHHDEMPQQPILEIELFDVWGIDFMG 365

Query: 62  LFPQSGEYLYILLDVDYVLKCVEAISCTKNDVITIRNFSKEHL 105
            FPQSG ++YILL ++YV K  EAISC KND I +  F K ++
Sbjct: 366 PFPQSGGHIYILLAINYVSKMFEAISCMKNDAIIVNKFLKRNI 408

[Close]

BLAST of IVF0019763.1 vs. ExPASy TrEMBL
Match: A0A5D3DCJ0 (Integrase, catalytic core OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1312G00130 PE=4 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 1.6e-34
Identity = 74/110 (67.27%), Postives = 86/110 (78.18%), Query Frame = 0


Query: 1   MAAKVLQSGYFWPTLFKDLRNFVVNCDRCQRTGNMFHLDEMPQQPILEIELFNVWGIDFM 60
           M AKVLQ+GYFWPTLF+D+RNF+V CDR QRT NM H +EM Q+PILEIELFNVWGIDFM
Sbjct: 1   MTAKVLQNGYFWPTLFQDVRNFIVKCDRYQRTRNMSHRNEMSQRPILEIELFNVWGIDFM 60

Query: 61  RLFPQSGEYLYILLDVDYVLKCVEAISCTKNDVITIRNFSKEHLLEFWDT 111
             FPQS  ++YILL VDYV K VEAIS  KNDVIT+  F K ++   + T
Sbjct: 61  GPFPQSTGHIYILLVVDYVSKWVEAISYAKNDVITVNKFLKRNIFTRFGT 110

[Close]

BLAST of IVF0019763.1 vs. ExPASy TrEMBL
Match: A0A2P6R5R7 (Putative nucleotidyltransferase, Ribonuclease H OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr3g0450421 PE=4 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 2.6e-29
Identity = 65/109 (59.63%), Postives = 78/109 (71.56%), Query Frame = 0


Query: 2   AAKVLQSGYFWPTLFKDLRNFVVNCDRCQRTGNMFHLDEMPQQPILEIELFNVWGIDFMR 61
           A KVL+SG+FWPTLFKD   F V+CDRCQRTGN+   D+MPQ PIL +E+F+VWGIDFM 
Sbjct: 246 ALKVLESGFFWPTLFKDAYAFCVSCDRCQRTGNLGPRDQMPQNPILIVEIFDVWGIDFMG 305

Query: 62  LFPQSGEYLYILLDVDYVLKCVEAISCTKNDVITIRNFSKEHLLEFWDT 111
            FP S  YLYILL VDYV K VEA +   ND   + +F KEH+   + T
Sbjct: 306 PFPSSNGYLYILLAVDYVSKWVEAKATRTNDSKVVLSFLKEHVFSRFGT 354

[Close]

BLAST of IVF0019763.1 vs. NCBI nr
Match: XP_016900336.1 (PREDICTED: uncharacterized mitochondrial protein AtMg00750-like [Cucumis melo])

HSP 1 Score: 238 bits (608), Expect = 1.65e-79
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 0


Query: 1   MAAKVLQSGYFWPTLFKDLRNFVVNCDRCQRTGNMFHLDEMPQQPILEIELFNVWGIDFM 60
           MAAKVLQSGYFWPTLFKDLRNFVVNCDRCQRTGNMFHLDEMPQQPILEIELFNVWGIDFM
Sbjct: 1   MAAKVLQSGYFWPTLFKDLRNFVVNCDRCQRTGNMFHLDEMPQQPILEIELFNVWGIDFM 60

Query: 61  RLFPQSGEYLYILLDVDYVLKCVEAISCTKNDVITIRNFSKEHLLEFWDT 110
           RLFPQSGEYLYILLDVDYVLKCVEAISCTKNDVITIRNFSKEHLLEFWDT
Sbjct: 61  RLFPQSGEYLYILLDVDYVLKCVEAISCTKNDVITIRNFSKEHLLEFWDT 110

[Close]

BLAST of IVF0019763.1 vs. NCBI nr
Match: KAA0045378.1 (Retrovirus-related Pol polyprotein from transposon 412 family [Cucumis melo var. makuwa])

HSP 1 Score: 160 bits (405), Expect = 9.89e-46
Identity = 74/103 (71.84%), Postives = 84/103 (81.55%), Query Frame = 0


Query: 2   AAKVLQSGYFWPTLFKDLRNFVVNCDRCQRTGNMFHLDEMPQQPILEIELFNVWGIDFMR 61
           AAKVLQS YFWPTLF+D+RNFVV CD+CQRTGNM H DEMPQQPILEIELF+VWGIDFM 
Sbjct: 165 AAKVLQSRYFWPTLFQDVRNFVVKCDQCQRTGNMSHHDEMPQQPILEIELFDVWGIDFMG 224

Query: 62  LFPQSGEYLYILLDVDYVLKCVEAISCTKNDVITIRNFSKEHL 104
            FPQSG ++YILL + YV K  EAISC KND I +  F K ++
Sbjct: 225 PFPQSGGHIYILLAIIYVSKMFEAISCMKNDAIIVSKFLKRNI 267

[Close]

BLAST of IVF0019763.1 vs. NCBI nr
Match: KAA0056726.1 (Integrase, catalytic core [Cucumis melo var. makuwa] >TYK21190.1 Integrase, catalytic core [Cucumis melo var. makuwa])

HSP 1 Score: 155 bits (391), Expect = 5.36e-45
Identity = 74/110 (67.27%), Postives = 86/110 (78.18%), Query Frame = 0


Query: 1   MAAKVLQSGYFWPTLFKDLRNFVVNCDRCQRTGNMFHLDEMPQQPILEIELFNVWGIDFM 60
           M AKVLQ+GYFWPTLF+D+RNF+V CDR QRT NM H +EM Q+PILEIELFNVWGIDFM
Sbjct: 1   MTAKVLQNGYFWPTLFQDVRNFIVKCDRYQRTRNMSHRNEMSQRPILEIELFNVWGIDFM 60

Query: 61  RLFPQSGEYLYILLDVDYVLKCVEAISCTKNDVITIRNFSKEHLLEFWDT 110
             FPQS  ++YILL VDYV K VEAIS  KNDVIT+  F K ++   + T
Sbjct: 61  GPFPQSTGHIYILLVVDYVSKWVEAISYAKNDVITVNKFLKRNIFTRFGT 110

[Close]

BLAST of IVF0019763.1 vs. NCBI nr
Match: TYJ96947.1 (integrase [Cucumis melo var. makuwa])

HSP 1 Score: 159 bits (402), Expect = 5.01e-44
Identity = 73/103 (70.87%), Postives = 84/103 (81.55%), Query Frame = 0


Query: 2   AAKVLQSGYFWPTLFKDLRNFVVNCDRCQRTGNMFHLDEMPQQPILEIELFNVWGIDFMR 61
           AAKVLQS YFWPTLF+D+RNFVV CD+CQRT NM H DEMPQQPILEIELF+VWGIDFM 
Sbjct: 306 AAKVLQSRYFWPTLFQDVRNFVVKCDQCQRTENMSHHDEMPQQPILEIELFDVWGIDFMG 365

Query: 62  LFPQSGEYLYILLDVDYVLKCVEAISCTKNDVITIRNFSKEHL 104
            FPQSG ++YILL ++YV K  EAISC KND I +  F K ++
Sbjct: 366 PFPQSGGHIYILLAINYVSKMFEAISCMKNDAIIVNKFLKRNI 408

[Close]

BLAST of IVF0019763.1 vs. NCBI nr
Match: WP_217833161.1 (DDE-type integrase/transposase/recombinase, partial [Synechococcus sp. PCC 7002])

HSP 1 Score: 137 bits (345), Expect = 1.63e-36
Identity = 65/109 (59.63%), Postives = 78/109 (71.56%), Query Frame = 0


Query: 2   AAKVLQSGYFWPTLFKDLRNFVVNCDRCQRTGNMFHLDEMPQQPILEIELFNVWGIDFMR 61
           AAKVLQSGYFWPTLFKD R + V CDRCQRTGN+ + +EMP   +LE+ELF+VWGIDFM 
Sbjct: 110 AAKVLQSGYFWPTLFKDARAYAVACDRCQRTGNISNRNEMPLNSMLEVELFDVWGIDFMG 169

Query: 62  LFPQSGEYLYILLDVDYVLKCVEAISCTKNDVITIRNFSKEHLLEFWDT 110
            FP S    YIL+ VDYV K VEA +C KND  T+  F K+ +   + T
Sbjct: 170 PFPPSCGNQYILVAVDYVSKWVEAAACAKNDANTVSKFLKKQIFSRFGT 218

[Close]

BLAST of IVF0019763.1 vs. TAIR 10
Match: ATMG00750.1 (GAG/POL/ENV polyprotein )

HSP 1 Score: 82.4 bits (202), Expect = 2.5e-16
Identity = 34/57 (59.65%), Postives = 43/57 (75.44%), Query Frame = 0


Query: 5  VLQSGYFWPTLFKDLRNFVVNCDRCQRTGNMFHLDEMPQQPILEIELFNVWGIDFMR 62
          VLQ+G++WPT FKD   FV +CD CQR GN    +EMPQ  ILE+E+F+VWGI FM+
Sbjct: 35 VLQAGFYWPTTFKDAHGFVSSCDACQRKGNFTKRNEMPQHFILEVEVFDVWGIYFMK 91

The following BLAST results are available for this feature:

BLAST of IVF0019763.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P92516	3.5e-15	59.65	Uncharacterized mitochondrial protein AtMg00750 OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of IVF0019763.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S4DWG6	1.1e-59	100.00	uncharacterized mitochondrial protein AtMg00750-like OS=Cucumis melo OX=3656 GN=...	[more]
A0A5A7TR90	3.7e-36	71.84	Retrovirus-related Pol polyprotein from transposon 412 family OS=Cucumis melo va...	[more]
A0A5D3BCU9	8.2e-36	70.87	Integrase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold220G00570 PE=4...	[more]
A0A5D3DCJ0	1.6e-34	67.27	Integrase, catalytic core OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A2P6R5R7	2.6e-29	59.63	Putative nucleotidyltransferase, Ribonuclease H OS=Rosa chinensis OX=74649 GN=Rc...	[more]

BLAST of IVF0019763.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_016900336.1	1.65e-79	100.00	PREDICTED: uncharacterized mitochondrial protein AtMg00750-like [Cucumis melo]	[more]
KAA0045378.1	9.89e-46	71.84	Retrovirus-related Pol polyprotein from transposon 412 family [Cucumis melo var....	[more]
KAA0056726.1	5.36e-45	67.27	Integrase, catalytic core [Cucumis melo var. makuwa] >TYK21190.1 Integrase, cata...	[more]
TYJ96947.1	5.01e-44	70.87	integrase [Cucumis melo var. makuwa]	[more]
WP_217833161.1	1.63e-36	59.63	DDE-type integrase/transposase/recombinase, partial [Synechococcus sp. PCC 7002]	[more]

BLAST of IVF0019763.1 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00750.1	2.5e-16	59.65	GAG/POL/ENV polyprotein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 47..108 e-value: 3.7E-5 score: 25.1
None	No IPR available	GENE3D	1.10.340.70		coord: 1..32 e-value: 2.5E-6 score: 29.6
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 2..102
None	No IPR available	PANTHER	PTHR24559:SF373	REVERSE TRANSCRIPTASE DOMAIN, RIBONUCLEASE H-LIKE DOMAIN PROTEIN-RELATED	coord: 2..102
IPR041588	Integrase zinc-binding domain	PFAM	PF17921	Integrase_H2C2	coord: 6..32 e-value: 1.1E-6 score: 28.7

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
IVF0019763	IVF0019763	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0019763.1-exon	IVF0019763.1-exon-chr01:20222350..20222682	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0019763.1-cds	IVF0019763.1-cds-chr01:20222350..20222682	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
IVF0019763.1	IVF0019763.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0016740	transferase activity