IVF0018616.1 (mRNA) Melon (IVF77) v1

Overview
NameIVF0018616.1
TypemRNA
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionUnknown protein
Locationchr01: 9670822 .. 9672094 (-)
Sequence length1032
RNA-Seq ExpressionIVF0018616.1
SyntenyIVF0018616.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TCCACTTTTTCTCACCAACAAAACACACATACACAACACATACACACTTCATCTTCTTCCTCAAATTAAAGATTGAACAGAAAGAAAAAAATCAAAAACCATGGATCAAAATGGAGTAGTTCAATTCCAACACCAAAAGACAAGCATAGGAGATCAAAAGAAGATGAAACCCACCTCTCATCCAACACTAAAAAAGGTAACAAAATTACTTTTTTCACTCTCTCTCTTCTCCTTCTTCTTCACTAACCTTCCATTTCACTTCCATATCTCCTCCCATTTCTTCAACCAACCAATTGACAAAACTCCATGTTCCTCCTTTGTAACGCCCTCCTCGTTTTCCTTGCAAATTACTCCGGTCTCTTCAAATCCCTCTCTTCTTCCCCAAACATCTCGACACCAATTTCCGATTCTTCGACTTCGGCCTCGACCTTCTTCAGAAGCCGTCATCGACTCACTCTGAAACTCCAGAAGAAAAGAAAGATGACGCACAACAAAACACACCAAGTTTTGAACAACAAGAAGAAGAAGAAGCGTTAGGGGAAAGGCTTTTTGGAAGTGAAACAGGGGAAGTTGTAGAGATGATTCAAGCAGAAGAAGAAGAAGACGACGAAGAAGAAGAAGAAGAAGGGAATTGTGGAGTGATGAGTGATGAAGAACTCAATAGAAAGTTTGATGAATTCATCAAAAGAATGAAGGAAGAAATCATTCTAGATGATGCTCCAAGAACTCTAGTTGTTGTTTGATTATTATTATTATCACTACTTAGTTTTAGGCTAAATTACAAAATCAAAATTAAAATTAAAATATTTTAAATAAACCTCCTTATTTGTTTTTAAAATATTTTTATTTTTTTAAAAGGTGCAATAATTTACTTTTGACCTTTCATGAACATTAGATTGAATTTGAAATTTTGAATCAGTGTTGTCATGGTGTTCAAGTTCTAAATTTTAGTTTTAAGTCATTGCTATACACTGTTTCCAAGTGTCAATTTTTGTCTAATATTCTGATCAATTTTTACTCTAACAATGGATTTGAAATGTTTCAGAGAAAGGTCAAGGTAATTATAACTTTTGAAAAAATATGGATATTTTTTTAACAAATGATGACGTTTAAAAGTATTATTTTATTTGTAATTTAGCCTTAATTTTATTAAAATGATTGGAAATCATAAAAGAAAAACAAATAATAATAATATATGACACCTCAAAAAATGTTTGTAATATATGTTTATCTTCTTATAGCATATATTCGTCGACAAGATTAATTTGTACCT

mRNA sequence

TCCACTTTTTCTCACCAACAAAACACACATACACAACACATACACACTTCATCTTCTTCCTCAAATTAAAGATTGAACAGAAAGAAAAAAATCAAAAACCATGGATCAAAATGGAGTAGTTCAATTCCAACACCAAAAGACAAGCATAGGAGATCAAAAGAAGATGAAACCCACCTCTCATCCAACACTAAAAAAGAAGCCGTCATCGACTCACTCTGAAACTCCAGAAGAAAAGAAAGATGACGCACAACAAAACACACCAAGTTTTGAACAACAAGAAGAAGAAGAAGCGTTAGGGGAAAGGCTTTTTGGAAGTGAAACAGGGGAAGTTGTAGAGATGATTCAAGCAGAAGAAGAAGAAGACGACGAAGAAGAAGAAGAAGAAGGGAATTGTGGAGTGATGAGTGATGAAGAACTCAATAGAAAGTTTGATGAATTCATCAAAAGAATGAAGGAAGAAATCATTCTAGATGATGCTCCAAGAACTCTAGTTGTTGTTTGATTATTATTATTATCACTACTTAGTTTTAGGCTAAATTACAAAATCAAAATTAAAATTAAAATATTTTAAATAAACCTCCTTATTTGTTTTTAAAATATTTTTATTTTTTTAAAAGGTGCAATAATTTACTTTTGACCTTTCATGAACATTAGATTGAATTTGAAATTTTGAATCAGTGTTGTCATGGTGTTCAAGTTCTAAATTTTAGTTTTAAGTCATTGCTATACACTGTTTCCAAGTGTCAATTTTTGTCTAATATTCTGATCAATTTTTACTCTAACAATGGATTTGAAATGTTTCAGAGAAAGGTCAAGGTAATTATAACTTTTGAAAAAATATGGATATTTTTTTAACAAATGATGACGTTTAAAAGTATTATTTTATTTGTAATTTAGCCTTAATTTTATTAAAATGATTGGAAATCATAAAAGAAAAACAAATAATAATAATATATGACACCTCAAAAAATGTTTGTAATATATGTTTATCTTCTTATAGCATATATTCGTCGACAAGATTAATTTGTACCT

Coding sequence (CDS)

ATGGATCAAAATGGAGTAGTTCAATTCCAACACCAAAAGACAAGCATAGGAGATCAAAAGAAGATGAAACCCACCTCTCATCCAACACTAAAAAAGAAGCCGTCATCGACTCACTCTGAAACTCCAGAAGAAAAGAAAGATGACGCACAACAAAACACACCAAGTTTTGAACAACAAGAAGAAGAAGAAGCGTTAGGGGAAAGGCTTTTTGGAAGTGAAACAGGGGAAGTTGTAGAGATGATTCAAGCAGAAGAAGAAGAAGACGACGAAGAAGAAGAAGAAGAAGGGAATTGTGGAGTGATGAGTGATGAAGAACTCAATAGAAAGTTTGATGAATTCATCAAAAGAATGAAGGAAGAAATCATTCTAGATGATGCTCCAAGAACTCTAGTTGTTGTTTGA

Protein sequence

MDQNGVVQFQHQKTSIGDQKKMKPTSHPTLKKKPSSTHSETPEEKKDDAQQNTPSFEQQEEEEALGERLFGSETGEVVEMIQAEEEEDDEEEEEEGNCGVMSDEELNRKFDEFIKRMKEEIILDDAPRTLVVV
Homology
BLAST of IVF0018616.1 vs. ExPASy TrEMBL
Match: A0A1S3CI71 (uncharacterized protein LOC103501239 OS=Cucumis melo OX=3656 GN=LOC103501239 PE=4 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 2.3e-48
Identity = 132/218 (60.55%), Postives = 133/218 (61.01%), Query Frame = 0

Query: 1   MDQNGVVQFQHQKTSIGDQKKMKPTSHPTLKK---------------------------- 60
           MDQNGVVQFQHQKTSIGDQKKMKPTSHPTLKK                            
Sbjct: 1   MDQNGVVQFQHQKTSIGDQKKMKPTSHPTLKKVTKLLFSLSLFSFFFTNLPFHFHISSHF 60

Query: 61  -----------------------------------------------------KPSSTHS 120
                                                                KPSSTHS
Sbjct: 61  FNQPIDKNSMFLLCNALLVFLANYSGLFKSLSSSPKHLDTNFRFFDFGLDLLQKPSSTHS 120

Query: 121 ETPEEKKDDAQQNTPSFEQQEEEEALGERLFGSETGEVVEMIQAEEEEDD----EEEEEE 134
           ETPEEKKDDAQQNTPSFEQQEEEEALGERLFGSETGEVVEMIQAEEEE+D    EEEEEE
Sbjct: 121 ETPEEKKDDAQQNTPSFEQQEEEEALGERLFGSETGEVVEMIQAEEEEEDDEEEEEEEEE 180

BLAST of IVF0018616.1 vs. ExPASy TrEMBL
Match: A0A5D3C7J6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G00530 PE=4 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 8.4e-43
Identity = 102/104 (98.08%), Postives = 103/104 (99.04%), Query Frame = 0

Query: 30  LKKKPSSTHSETPEEKKDDAQQNTPSFEQQEEEEALGERLFGSETGEVVEMIQAEEEEDD 89
           L +KPSSTHSETPEEKKDDAQQNTPSFEQQEEEEALGERLFGSETGEVVEMIQAEEEEDD
Sbjct: 42  LLQKPSSTHSETPEEKKDDAQQNTPSFEQQEEEEALGERLFGSETGEVVEMIQAEEEEDD 101

Query: 90  EEEEEEGNCGVMSDEELNRKFDEFIKRMKEEIILDDAPRTLVVV 134
           EEEEEEGNCGVMSDEELNRKFDEFIKRMKEEIILDDAPRTLVVV
Sbjct: 102 EEEEEEGNCGVMSDEELNRKFDEFIKRMKEEIILDDAPRTLVVV 145

BLAST of IVF0018616.1 vs. ExPASy TrEMBL
Match: A0A0A0K300 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G098730 PE=4 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 1.6e-33
Identity = 111/221 (50.23%), Postives = 118/221 (53.39%), Query Frame = 0

Query: 1   MDQNGVVQF-QHQKTSIGDQKKMKPTSHPTLKK--------------------------- 60
           MDQNGVVQF Q+QKTSIGDQKK KPTSH TLKK                           
Sbjct: 1   MDQNGVVQFQQYQKTSIGDQKKTKPTSHQTLKKVTKLLFSISLFSFFITNLPFHFHVISS 60

Query: 61  -----------------------------------------------------------K 120
                                                                      K
Sbjct: 61  HFFNQPIDKNSMFLLCNALLVFLANYSGLFKSLSSSSSSSPKHLDTNFRFFDFGLDLLQK 120

Query: 121 PSSTHSETPEEKKDDAQQNTPSFEQQEEE-EALGERLFGSETGEVVEMIQAEEEEDDEEE 134
           PSS HSETPEEKKDDA QN P+ EQQ+++ E LGE LFGSETGE+VEMIQ EEEED+E  
Sbjct: 121 PSSIHSETPEEKKDDALQNPPNLEQQQQQAEVLGETLFGSETGELVEMIQEEEEEDEE-- 180

BLAST of IVF0018616.1 vs. ExPASy TrEMBL
Match: A0A6J1F6C4 (uncharacterized protein LOC111442742 OS=Cucurbita moschata OX=3662 GN=LOC111442742 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 2.6e-12
Identity = 62/117 (52.99%), Postives = 74/117 (63.25%), Query Frame = 0

Query: 24  PTSHP---TLKKKPSSTHSET-PEEKKDDAQQ---NTPSFEQQEEEEALGERLFGSETGE 83
           P S P    L +KP    +ET  +EK DD  +   + P   +++E   L  R F +ETGE
Sbjct: 119 PLSEPITTELVQKPPLIPTETAADEKNDDPDERIVSAPENGEEDESYGLAARFFAAETGE 178

Query: 84  VVEMIQAEEEEDDEEEEEEGNCGVMSDEELNRKFDEFIKRMKEEIILDDAPRTLVVV 134
           V +   A      EEEEEEGN GV+SDEEL RKFDEFIKRMKEEI+LDDA RTLVVV
Sbjct: 179 VEDTAAA-----TEEEEEEGNGGVLSDEELKRKFDEFIKRMKEEIVLDDATRTLVVV 230

BLAST of IVF0018616.1 vs. ExPASy TrEMBL
Match: A0A6J1IEZ8 (uncharacterized protein LOC111475827 OS=Cucurbita maxima OX=3661 GN=LOC111475827 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 1.3e-11
Identity = 56/114 (49.12%), Postives = 70/114 (61.40%), Query Frame = 0

Query: 23  KPTSHPTLKKKPSSTHSETPEEKKDDAQQ---NTPSFEQQEEEEALGERLFGSETGEVVE 82
           +P +   ++K P        +EK DD  +   + P   +++E   L  R F +ETGEV +
Sbjct: 103 EPITAELVQKPPLIPTEAAADEKNDDPDERIVSAPENSEEDESYGLAARFFAAETGEVED 162

Query: 83  MIQAEEEEDDEEEEEEGNCGVMSDEELNRKFDEFIKRMKEEIILDDAPRTLVVV 134
              A       EEEEEGN GV+SDEEL RKFDEFIKRMKEEI+LDDA RTLVVV
Sbjct: 163 TTAAA-----AEEEEEGNGGVLSDEELKRKFDEFIKRMKEEIVLDDATRTLVVV 211

BLAST of IVF0018616.1 vs. NCBI nr
Match: XP_008462992.1 (PREDICTED: uncharacterized protein LOC103501239 [Cucumis melo])

HSP 1 Score: 201 bits (512), Expect = 6.12e-63
Identity = 132/218 (60.55%), Postives = 133/218 (61.01%), Query Frame = 0

Query: 1   MDQNGVVQFQHQKTSIGDQKKMKPTSHPTLKK---------------------------- 60
           MDQNGVVQFQHQKTSIGDQKKMKPTSHPTLKK                            
Sbjct: 1   MDQNGVVQFQHQKTSIGDQKKMKPTSHPTLKKVTKLLFSLSLFSFFFTNLPFHFHISSHF 60

Query: 61  -----------------------------------------------------KPSSTHS 120
                                                                KPSSTHS
Sbjct: 61  FNQPIDKNSMFLLCNALLVFLANYSGLFKSLSSSPKHLDTNFRFFDFGLDLLQKPSSTHS 120

Query: 121 ETPEEKKDDAQQNTPSFEQQEEEEALGERLFGSETGEVVEMIQAEEEEDD----EEEEEE 133
           ETPEEKKDDAQQNTPSFEQQEEEEALGERLFGSETGEVVEMIQAEEEE+D    EEEEEE
Sbjct: 121 ETPEEKKDDAQQNTPSFEQQEEEEALGERLFGSETGEVVEMIQAEEEEEDDEEEEEEEEE 180

BLAST of IVF0018616.1 vs. NCBI nr
Match: TYK07937.1 (uncharacterized protein E5676_scaffold265G00530 [Cucumis melo var. makuwa])

HSP 1 Score: 183 bits (464), Expect = 1.19e-56
Identity = 102/104 (98.08%), Postives = 103/104 (99.04%), Query Frame = 0

Query: 30  LKKKPSSTHSETPEEKKDDAQQNTPSFEQQEEEEALGERLFGSETGEVVEMIQAEEEEDD 89
           L +KPSSTHSETPEEKKDDAQQNTPSFEQQEEEEALGERLFGSETGEVVEMIQAEEEEDD
Sbjct: 42  LLQKPSSTHSETPEEKKDDAQQNTPSFEQQEEEEALGERLFGSETGEVVEMIQAEEEEDD 101

Query: 90  EEEEEEGNCGVMSDEELNRKFDEFIKRMKEEIILDDAPRTLVVV 133
           EEEEEEGNCGVMSDEELNRKFDEFIKRMKEEIILDDAPRTLVVV
Sbjct: 102 EEEEEEGNCGVMSDEELNRKFDEFIKRMKEEIILDDAPRTLVVV 145

BLAST of IVF0018616.1 vs. NCBI nr
Match: KGN44005.1 (hypothetical protein Csa_018201 [Cucumis sativus])

HSP 1 Score: 152 bits (385), Expect = 1.01e-43
Identity = 111/221 (50.23%), Postives = 118/221 (53.39%), Query Frame = 0

Query: 1   MDQNGVVQFQ-HQKTSIGDQKKMKPTSHPTLKK--------------------------- 60
           MDQNGVVQFQ +QKTSIGDQKK KPTSH TLKK                           
Sbjct: 1   MDQNGVVQFQQYQKTSIGDQKKTKPTSHQTLKKVTKLLFSISLFSFFITNLPFHFHVISS 60

Query: 61  -----------------------------------------------------------K 120
                                                                      K
Sbjct: 61  HFFNQPIDKNSMFLLCNALLVFLANYSGLFKSLSSSSSSSPKHLDTNFRFFDFGLDLLQK 120

Query: 121 PSSTHSETPEEKKDDAQQNTPSFEQQEEE-EALGERLFGSETGEVVEMIQAEEEEDDEEE 133
           PSS HSETPEEKKDDA QN P+ EQQ+++ E LGE LFGSETGE+VEMIQ EEEED+E  
Sbjct: 121 PSSIHSETPEEKKDDALQNPPNLEQQQQQAEVLGETLFGSETGELVEMIQEEEEEDEE-- 180

BLAST of IVF0018616.1 vs. NCBI nr
Match: XP_011659727.1 (uncharacterized protein LOC105436244 [Cucumis sativus])

HSP 1 Score: 141 bits (355), Expect = 4.33e-40
Identity = 83/105 (79.05%), Postives = 90/105 (85.71%), Query Frame = 0

Query: 30  LKKKPSSTHSETPEEKKDDAQQNTPSFEQQEEE-EALGERLFGSETGEVVEMIQAEEEED 89
           L +KPSS HSETPEEKKDDA QN P+ EQQ+++ E LGE LFGSETGE+VEMIQ EEEED
Sbjct: 46  LLQKPSSIHSETPEEKKDDALQNPPNLEQQQQQAEVLGETLFGSETGELVEMIQEEEEED 105

Query: 90  DEEEEEEGNCGVMSDEELNRKFDEFIKRMKEEIILDDAPRTLVVV 133
           +E      NCGVMSDEELNRKFDEFIKRMKEEIILDDAPRTLVVV
Sbjct: 106 EE------NCGVMSDEELNRKFDEFIKRMKEEIILDDAPRTLVVV 144

BLAST of IVF0018616.1 vs. NCBI nr
Match: XP_038896510.1 (uncharacterized protein LOC120084761 [Benincasa hispida])

HSP 1 Score: 119 bits (297), Expect = 2.42e-31
Identity = 71/105 (67.62%), Postives = 79/105 (75.24%), Query Frame = 0

Query: 33  KPSSTHSETPEEKKDDAQQNTPSFEQQEEEEA----LGERLFGSETGEVVEMIQAEEEED 92
           KP   HSE  EEKKDD Q+N P+ +++E+EE     LGE  FG ETGEV E+I       
Sbjct: 45  KPPLIHSEAAEEKKDDPQENRPNLQEEEQEEQETQMLGEMFFGGETGEVEEII------- 104

Query: 93  DEEEEEEGNCGVMSDEELNRKFDEFIKRMKEEIILDDAPRTLVVV 133
             EEEEEGNCGV+SDEELNRKFDEFIKRMKEEIILDDAPRTLVVV
Sbjct: 105 --EEEEEGNCGVLSDEELNRKFDEFIKRMKEEIILDDAPRTLVVV 140

BLAST of IVF0018616.1 vs. TAIR 10
Match: AT3G13130.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: male gametophyte; Has 140 Blast hits to 132 proteins in 41 species: Archae - 2; Bacteria - 4; Metazoa - 29; Fungi - 20; Plants - 51; Viruses - 0; Other Eukaryotes - 34 (source: NCBI BLink). )

HSP 1 Score: 42.0 bits (97), Expect = 4.5e-04
Identity = 37/98 (37.76%), Postives = 54/98 (55.10%), Query Frame = 0

Query: 38  HSETPEEKKDDAQQNTPSFEQQEEEEALGERLFGSETGEVVEMIQAEEEEDDEEEEEEGN 97
           H ET + +++D   NT +    EEE        G   G +              EEEEGN
Sbjct: 125 HQETEDNEEEDDDDNTLADNDGEEE-------CGLRGGSI-------------NEEEEGN 184

Query: 98  CGVM--SDEELNRKFDEFIKRMKEEIILDDAPRTLVVV 134
            GVM  ++EE+N+KFDEFI++MKEE+ + +A R L++V
Sbjct: 185 VGVMTSTEEEMNKKFDEFIRKMKEELRI-EAKRHLILV 201

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A1S3CI712.3e-4860.55uncharacterized protein LOC103501239 OS=Cucumis melo OX=3656 GN=LOC103501239 PE=... [more]
A0A5D3C7J68.4e-4398.08Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0K3001.6e-3350.23Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G098730 PE=4 SV=1[more]
A0A6J1F6C42.6e-1252.99uncharacterized protein LOC111442742 OS=Cucurbita moschata OX=3662 GN=LOC1114427... [more]
A0A6J1IEZ81.3e-1149.12uncharacterized protein LOC111475827 OS=Cucurbita maxima OX=3661 GN=LOC111475827... [more]
Match NameE-valueIdentityDescription
XP_008462992.16.12e-6360.55PREDICTED: uncharacterized protein LOC103501239 [Cucumis melo][more]
TYK07937.11.19e-5698.08uncharacterized protein E5676_scaffold265G00530 [Cucumis melo var. makuwa][more]
KGN44005.11.01e-4350.23hypothetical protein Csa_018201 [Cucumis sativus][more]
XP_011659727.14.33e-4079.05uncharacterized protein LOC105436244 [Cucumis sativus][more]
XP_038896510.12.42e-3167.62uncharacterized protein LOC120084761 [Benincasa hispida][more]
Match NameE-valueIdentityDescription
AT3G13130.14.5e-0437.76unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 33..51
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..75
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..22
NoneNo IPR availablePANTHERPTHR34947:SF2TRANSMEMBRANE PROTEINcoord: 13..133
NoneNo IPR availablePANTHERPTHR34947TRANSMEMBRANE PROTEINcoord: 13..133

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
IVF0018616IVF0018616gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
IVF0018616.1-exonIVF0018616.1-exon-chr01:9670822..9671657exon
IVF0018616.1-exonIVF0018616.1-exon-chr01:9671899..9672094exon


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
IVF0018616.1-three_prime_utrIVF0018616.1-three_prime_utr-chr01:9670822..9671351three_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
IVF0018616.1-cdsIVF0018616.1-cds-chr01:9671352..9671657CDS
IVF0018616.1-cdsIVF0018616.1-cds-chr01:9671899..9671994CDS


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
IVF0018616.1-five_prime_utrIVF0018616.1-five_prime_utr-chr01:9671995..9672094five_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
IVF0018616.1IVF0018616.1-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane